Wall clock time and date at job start Tue Mar 31 2020 03:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46811 * 60.00153 * 8 6 4 10 10 H 1.48499 * 109.46951 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47123 * 299.99953 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 S 1.65606 * 119.99935 * 239.99645 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.47018 * 125.64671 * 269.68872 * 17 14 12 19 19 C 1.54337 * 107.26694 * 178.85100 * 18 17 14 20 20 C 1.55157 * 103.01684 * 338.14221 * 19 18 17 21 21 C 1.52999 * 111.00191 * 153.37891 * 20 19 18 22 22 F 1.39895 * 111.03783 * 277.21234 * 20 19 18 23 23 C 1.47425 * 125.65062 * 90.00075 * 17 14 12 24 24 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 25 25 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 26 26 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 27 27 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 29 29 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 30 30 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 31 31 H 1.08998 * 109.88627 * 298.40110 * 18 17 14 32 32 H 1.08999 * 109.88199 * 59.56478 * 18 17 14 33 33 H 1.09000 * 110.85305 * 219.67436 * 19 18 17 34 34 H 1.08998 * 110.66768 * 96.52542 * 19 18 17 35 35 H 1.09003 * 109.47521 * 307.80220 * 21 20 19 36 36 H 1.09008 * 109.47201 * 67.80140 * 21 20 19 37 37 H 1.09000 * 109.47387 * 187.80063 * 21 20 19 38 38 H 1.09003 * 110.36634 * 322.93163 * 23 17 14 39 39 H 1.09004 * 110.36690 * 85.24808 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.8279 -2.5194 -4.0084 10 1 1.8268 -0.4194 -5.2205 11 1 3.8074 -1.1185 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1140 2.2862 15 8 2.6904 1.4970 2.1194 16 8 2.8229 -0.5649 3.5257 17 7 4.5438 -0.1044 1.8179 18 6 5.4232 -1.1993 2.2528 19 6 6.7788 -1.0089 1.5400 20 6 6.4088 -0.1337 0.3135 21 6 7.6066 0.6993 -0.1471 22 9 5.9155 -0.9193 -0.7337 23 6 5.2967 0.7707 0.9008 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7080 1.1612 -3.4843 28 1 2.4158 -2.7378 0.9713 29 1 0.6905 -2.3003 0.9844 30 1 1.6239 -2.2855 2.5000 31 1 5.5611 -1.1572 3.3332 32 1 4.9891 -2.1582 1.9696 33 1 7.1872 -1.9677 1.2205 34 1 7.4839 -0.4874 2.1873 35 1 8.0147 1.2490 0.7011 36 1 8.3726 0.0397 -0.5551 37 1 7.2861 1.4028 -0.9156 38 1 4.6463 1.1367 0.1063 39 1 5.7356 1.6053 1.4476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337756922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:08 Heat of formation + Delta-G solvation = -142.923499 kcal Electronic energy + Delta-G solvation = -24043.743992 eV Core-core repulsion = 20447.803566 eV Total energy + Delta-G solvation = -3595.940426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.53579 -39.04859 -38.42467 -37.92442 -36.98338 -34.52831 -33.14299 -30.94726 -30.63291 -27.33476 -27.23308 -27.00442 -23.49776 -22.55584 -21.44283 -20.04385 -18.87477 -18.56909 -18.35160 -17.55259 -16.90382 -16.46681 -16.30022 -15.98549 -15.43560 -15.20032 -14.89327 -14.64151 -14.51208 -14.04747 -13.76903 -13.70747 -13.51146 -13.46103 -13.30741 -13.22932 -13.02857 -12.96085 -12.79837 -12.66106 -12.58616 -12.34885 -12.24703 -12.19164 -11.90253 -11.74137 -11.49734 -11.18929 -10.50656 -10.05499 -9.67799 -8.10252 -6.23951 -0.42398 1.42790 1.44530 1.51688 1.90487 2.44002 2.50115 3.04599 3.17833 3.27870 3.52995 3.69567 3.81641 4.09300 4.24366 4.26640 4.45338 4.64446 4.67671 4.68267 4.73615 4.76320 4.89477 4.92035 4.94649 5.01773 5.06871 5.12869 5.13568 5.23198 5.31152 5.35434 5.60129 5.72993 5.83547 6.08070 6.27726 6.84041 7.45359 8.93983 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.008945 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.611396 B = 3129.503520 C = 4442.014333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.274 3.726 3 H 0.022 0.978 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.998 5.998 13 C 0.097 3.903 14 S 2.808 3.192 15 O -1.010 7.010 16 O -0.998 6.998 17 N -1.019 6.019 18 C 0.109 3.891 19 C -0.130 4.130 20 C 0.093 3.907 21 C -0.158 4.158 22 F -0.218 7.218 23 C 0.098 3.902 24 H 0.020 0.980 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.434 -4.023 7.324 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.839 5.839 13 C -0.049 4.049 14 S 2.819 3.181 15 O -0.995 6.995 16 O -0.983 6.983 17 N -0.860 5.860 18 C -0.016 4.016 19 C -0.169 4.169 20 C 0.073 3.927 21 C -0.215 4.215 22 F -0.199 7.199 23 C -0.028 4.028 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.927 -3.434 7.976 15.573 hybrid contribution -0.274 -0.449 -1.552 1.639 sum 12.654 -3.884 6.424 14.713 Atomic orbital electron populations 1.21946 0.97668 1.00151 1.00100 1.18383 0.92064 0.91131 0.81412 0.95974 1.21492 1.31138 1.12835 0.90725 0.92219 1.25601 0.95200 0.95619 1.01561 1.70000 1.37410 1.23892 1.24305 0.85698 0.78664 0.78872 0.78936 1.19555 1.21044 1.20094 1.57686 1.64916 1.22578 1.38753 1.21415 1.02093 0.80349 1.01017 1.00859 0.72052 0.72471 0.72737 1.93531 1.84369 1.34309 1.87258 1.93502 1.86231 1.76299 1.42224 1.58937 1.28566 1.37672 1.60790 1.21980 0.90537 0.88839 1.00206 1.23289 0.96487 1.02188 0.94939 1.22341 0.93997 0.90935 0.85399 1.22199 0.95280 1.00176 1.03892 1.92879 1.89753 1.76676 1.60560 1.22715 0.93884 0.93604 0.92625 0.96058 0.91007 0.93571 0.92722 0.92999 0.90617 0.90319 0.89199 0.91903 0.87564 0.85423 0.87456 0.89676 0.91944 0.92477 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 8.95 71.98 0.64 -6.19 16 2 C 0.27 13.99 2.62 44.24 0.12 14.11 16 3 H 0.02 1.29 6.91 -2.39 -0.02 1.27 16 4 C -0.52 -27.86 8.37 25.60 0.21 -27.64 16 5 H 0.06 3.16 7.65 -2.91 -0.02 3.14 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.92 -52.00 11.32 21.45 0.24 -51.76 16 8 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 N -1.00 -43.08 3.12 -520.44 -1.62 -44.71 16 13 C 0.10 3.50 9.90 127.77 1.27 4.76 16 14 S 2.81 114.35 6.35 -56.49 -0.36 113.99 16 15 O -1.01 -48.01 16.29 -128.00 -2.08 -50.09 16 16 O -1.00 -40.49 16.32 -128.00 -2.09 -42.58 16 17 N -1.02 -33.89 3.75 -506.42 -1.90 -35.79 16 18 C 0.11 2.70 6.99 86.73 0.61 3.31 16 19 C -0.13 -2.37 6.23 31.79 0.20 -2.17 16 20 C 0.09 2.36 1.66 -9.40 -0.02 2.34 16 21 C -0.16 -2.74 9.09 71.98 0.65 -2.09 16 22 F -0.22 -7.68 17.02 44.97 0.77 -6.92 16 23 C 0.10 3.02 6.26 86.85 0.54 3.56 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 26 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 27 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 2.71 6.43 -2.39 -0.02 2.70 16 30 H 0.08 2.53 7.02 -2.38 -0.02 2.52 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.11 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 2.66 8.04 -2.39 -0.02 2.64 16 Total: -1.00 -70.04 328.71 0.69 -69.35 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.04 Total: 11.59 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.68 Total: -8.49 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -3.28 Total: -132.25 kcal Atomic # 8 Polarization: -88.50 SS G_CDS: -4.17 Total: -92.67 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.77 Total: -6.92 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 114.35 SS G_CDS: -0.36 Total: 113.99 kcal Total: -70.04 0.69 -69.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337756922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.570 kcal (2) G-P(sol) polarization free energy of solvation -70.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds