Wall clock time and date at job start Tue Mar 31 2020 03:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47564 * 2 1 4 4 C 1.50698 * 109.47437 * 239.99638 * 2 1 3 5 5 H 1.07999 * 120.00279 * 244.66680 * 4 2 1 6 6 C 1.37879 * 119.99815 * 64.66116 * 4 2 1 7 7 N 1.31514 * 120.00244 * 198.95222 * 6 4 2 8 8 Si 1.86804 * 119.99717 * 18.95986 * 6 4 2 9 9 H 1.48507 * 109.46915 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.46965 * 299.99500 * 8 6 4 11 11 H 1.48494 * 109.47290 * 59.99559 * 8 6 4 12 12 N 1.46501 * 109.47045 * 119.99841 * 2 1 3 13 13 C 1.46495 * 120.00177 * 60.00216 * 12 2 1 14 14 S 1.65607 * 119.99992 * 239.99867 * 12 2 1 15 15 O 1.42097 * 106.40037 * 205.72514 * 14 12 2 16 16 O 1.42096 * 106.39972 * 338.64385 * 14 12 2 17 17 N 1.65598 * 107.21516 * 92.18190 * 14 12 2 18 18 C 1.47428 * 125.64634 * 81.67980 * 17 14 12 19 19 C 1.54689 * 104.93804 * 204.06719 * 18 17 14 20 20 C 1.55153 * 101.68218 * 323.28228 * 19 18 17 21 21 C 1.47024 * 125.64938 * 261.98222 * 17 14 12 22 22 H 1.08998 * 109.87733 * 59.48905 * 21 17 14 23 23 C 1.53001 * 109.88256 * 298.48156 * 21 17 14 24 24 F 1.39903 * 109.47211 * 71.33593 * 23 21 17 25 25 H 1.09000 * 109.46795 * 54.69697 * 1 2 3 26 26 H 1.08995 * 109.47040 * 174.69854 * 1 2 3 27 27 H 1.08999 * 109.47045 * 294.69948 * 1 2 3 28 28 H 0.96996 * 119.99903 * 354.95204 * 7 6 4 29 29 H 1.08995 * 109.47491 * 95.06765 * 13 12 2 30 30 H 1.08997 * 109.47145 * 215.07379 * 13 12 2 31 31 H 1.09005 * 109.47254 * 335.06739 * 13 12 2 32 32 H 1.08994 * 110.36515 * 323.00176 * 18 17 14 33 33 H 1.08997 * 110.36544 * 85.32743 * 18 17 14 34 34 H 1.08996 * 111.10479 * 205.10279 * 19 18 17 35 35 H 1.09011 * 110.81559 * 81.32364 * 19 18 17 36 36 H 1.09008 * 110.71825 * 276.97023 * 20 19 18 37 37 H 1.08991 * 110.72814 * 153.70091 * 20 19 18 38 38 H 1.08998 * 109.47316 * 191.33964 * 23 21 17 39 39 H 1.09004 * 109.47272 * 311.33857 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5898 -1.6304 -1.1330 6 6 1.7804 -0.1861 -2.4804 7 7 1.8734 -0.9517 -3.5457 8 14 1.3072 1.6120 -2.6609 9 1 1.0917 1.9255 -4.0964 10 1 0.0568 1.8731 -1.9036 11 1 2.3974 2.4669 -2.1262 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 16 2.9705 0.1143 2.2863 15 8 3.7492 -0.8746 2.9457 16 8 3.5392 1.2132 1.5877 17 7 1.9648 0.7591 3.4331 18 6 1.4057 0.0362 4.5899 19 6 0.1220 0.8142 4.9637 20 6 0.5521 2.2797 4.6909 21 6 1.4768 2.1457 3.4628 22 1 0.9175 2.3613 2.5524 23 6 2.6576 3.1104 3.5886 24 9 3.3705 3.1344 2.3850 25 1 -0.3633 0.5939 -0.8387 26 1 -0.3633 -1.0232 -0.0949 27 1 -0.3633 0.4294 0.9336 28 1 2.1897 -1.8646 -3.4606 29 1 2.4601 -2.7357 1.0511 30 1 1.5356 -2.2634 2.4969 31 1 0.7343 -2.3238 0.9087 32 1 1.1615 -0.9896 4.3143 33 1 2.1099 0.0491 5.4217 34 1 -0.1322 0.6705 6.0139 35 1 -0.7081 0.5243 4.3193 36 1 1.0982 2.6862 5.5423 37 1 -0.3139 2.8985 4.4560 38 1 2.2872 4.1110 3.8115 39 1 3.3139 2.7784 4.3930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339089506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:36 Heat of formation + Delta-G solvation = -114.167348 kcal Electronic energy + Delta-G solvation = -24198.884325 eV Core-core repulsion = 20604.190859 eV Total energy + Delta-G solvation = -3594.693466 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.09606 -38.64255 -36.67669 -36.29866 -35.18223 -32.52668 -30.96050 -30.83618 -29.78984 -25.77141 -25.33404 -24.58371 -21.94891 -21.37596 -20.46153 -18.47817 -17.57711 -17.41220 -17.04952 -16.25832 -15.53343 -15.27072 -15.18621 -14.40526 -14.14053 -13.86401 -13.58033 -13.42958 -13.19499 -12.87586 -12.71229 -12.39713 -12.10076 -12.03777 -11.69724 -11.58186 -11.49175 -11.41244 -11.21699 -11.17535 -11.07922 -10.77967 -10.70064 -10.55688 -10.38317 -9.91765 -9.72763 -9.13266 -8.96892 -8.35389 -8.01210 -6.45622 -4.07438 1.06896 3.34370 3.37617 3.52017 3.63792 4.00147 4.25680 4.32100 4.48813 4.57216 4.86416 4.92053 4.95175 5.12810 5.23351 5.26529 5.31146 5.41210 5.54149 5.56878 5.62759 5.72340 5.96207 5.99830 6.03578 6.13658 6.24948 6.35127 6.40178 6.46641 6.56928 6.62629 6.98784 7.36071 7.53930 8.01368 8.38982 8.91978 9.60362 10.92796 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.007139 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.225649 B = 3921.235253 C = 4264.545709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.246 3.754 3 H 0.050 0.950 4 C -0.605 4.605 5 H 0.063 0.937 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.274 1.274 12 N -0.983 5.983 13 C 0.113 3.887 14 S 2.774 3.226 15 O -0.990 6.990 16 O -0.942 6.942 17 N -1.018 6.018 18 C 0.121 3.879 19 C -0.129 4.129 20 C -0.120 4.120 21 C 0.120 3.880 22 H 0.087 0.913 23 C 0.036 3.964 24 F -0.178 7.178 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.268 0.732 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 5.852 18.806 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.141 3.859 3 H 0.068 0.932 4 C -0.645 4.645 5 H 0.081 0.919 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.200 1.200 12 N -0.824 5.824 13 C -0.034 4.034 14 S 2.785 3.215 15 O -0.974 6.974 16 O -0.925 6.925 17 N -0.856 5.856 18 C -0.004 4.004 19 C -0.168 4.168 20 C -0.159 4.159 21 C 0.013 3.987 22 H 0.105 0.895 23 C -0.021 4.021 24 F -0.158 7.158 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.368 7.016 17.570 19.666 hybrid contribution 0.093 -1.387 1.055 1.745 sum -5.275 5.629 18.625 20.160 Atomic orbital electron populations 1.22557 0.98891 1.01412 0.99255 1.18974 0.90645 0.93263 0.83032 0.93236 1.22153 1.40301 1.11298 0.90716 0.91895 1.25677 0.94517 1.04890 0.91971 1.70866 1.41500 1.09284 1.31851 0.84250 0.77496 0.75829 0.76308 1.20915 1.19912 1.19975 1.57618 1.70227 1.19666 1.34928 1.21129 1.01707 0.82089 0.98454 1.02282 0.73611 0.73259 0.72375 1.93543 1.66650 1.60964 1.76230 1.93754 1.74608 1.52104 1.72073 1.59651 1.67489 1.18296 1.40188 1.21886 0.94478 0.95724 0.88350 1.22741 0.97592 0.94511 1.01963 1.22580 0.98887 0.97718 0.96703 1.21958 0.94499 0.81671 1.00609 0.89467 1.22516 0.93586 1.00421 0.85563 1.93065 1.79344 1.97347 1.46087 0.91861 0.92964 0.95689 0.92188 0.93308 0.93754 0.90766 0.90968 0.91593 0.90036 0.90388 0.90405 0.89793 0.90147 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.74 37.16 0.32 -3.05 16 2 C 0.25 5.85 2.21 -69.08 -0.15 5.70 16 3 H 0.05 1.25 5.54 -51.93 -0.29 0.96 16 4 C -0.61 -17.03 8.67 -34.44 -0.30 -17.33 16 5 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.04 1.03 5.33 -17.82 -0.09 0.93 16 7 N -0.90 -27.56 13.70 55.43 0.76 -26.80 16 8 Si 1.03 25.31 26.47 -169.99 -4.50 20.81 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.27 -5.94 5.49 56.52 0.31 -5.63 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.98 -20.71 3.12 -115.86 -0.36 -21.07 16 13 C 0.11 2.07 9.39 59.84 0.56 2.63 16 14 S 2.77 55.93 6.22 -107.50 -0.67 55.26 16 15 O -0.99 -21.46 17.09 -57.17 -0.98 -22.44 16 16 O -0.94 -22.00 12.26 -57.17 -0.70 -22.70 16 17 N -1.02 -15.09 3.46 -104.55 -0.36 -15.45 16 18 C 0.12 1.36 7.06 -2.65 -0.02 1.34 16 19 C -0.13 -1.05 7.07 -24.70 -0.17 -1.22 16 20 C -0.12 -0.96 6.48 -24.90 -0.16 -1.12 16 21 C 0.12 1.49 3.44 -66.95 -0.23 1.26 16 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 23 C 0.04 0.45 6.91 37.16 0.26 0.71 16 24 F -0.18 -3.31 13.38 2.25 0.03 -3.28 16 25 H 0.06 1.36 4.79 -51.93 -0.25 1.11 16 26 H 0.05 1.07 6.88 -51.93 -0.36 0.71 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.67 7.46 -51.93 -0.39 0.28 16 31 H 0.07 1.32 6.54 -51.93 -0.34 0.98 16 32 H 0.07 0.79 7.58 -51.93 -0.39 0.40 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.08 0.50 7.86 -51.92 -0.41 0.09 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 317.13 15.07 4.78 4.78 Total: -1.00 -35.16 317.13 -7.87 -43.03 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.88 Total: -1.99 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 0.01 Total: -10.14 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.04 Total: -63.33 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.68 Total: -45.14 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.03 Total: -3.28 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.50 Total: 20.81 kcal Atomic # 16 Polarization: 55.93 SS G_CDS: -0.67 Total: 55.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.16 -7.87 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339089506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.141 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds