Wall clock time and date at job start Tue Mar 31 2020 03:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46944 * 2 1 4 4 C 1.50707 * 109.47131 * 240.00286 * 2 1 3 5 5 H 1.07998 * 119.99609 * 239.99787 * 4 2 1 6 6 C 1.37874 * 119.99779 * 60.00108 * 4 2 1 7 7 N 1.31506 * 120.00576 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99584 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47048 * 119.99703 * 8 6 4 11 11 H 1.48502 * 109.47169 * 239.99473 * 8 6 4 12 12 N 1.46494 * 109.47629 * 120.00066 * 2 1 3 13 13 C 1.46501 * 119.99776 * 59.99452 * 12 2 1 14 14 S 1.65598 * 120.00362 * 240.00401 * 12 2 1 15 15 O 1.42100 * 106.40578 * 156.45399 * 14 12 2 16 16 O 1.42102 * 106.39859 * 23.53442 * 14 12 2 17 17 N 1.65595 * 107.21729 * 269.99578 * 14 12 2 18 18 C 1.46500 * 119.99984 * 65.00055 * 17 14 12 19 19 H 1.09001 * 110.67461 * 338.23059 * 18 17 14 20 20 C 1.54895 * 110.75676 * 215.00079 * 18 17 14 21 21 C 1.54268 * 104.19476 * 203.55832 * 20 18 17 22 22 C 1.53869 * 106.60115 * 23.60777 * 21 20 18 23 23 C 1.54270 * 106.63967 * 359.97438 * 22 21 20 24 24 H 1.08997 * 110.48585 * 95.09409 * 23 22 21 25 25 F 1.39900 * 110.48592 * 217.73348 * 23 22 21 26 26 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47143 * 299.99907 * 1 2 3 28 28 H 1.08999 * 109.47165 * 60.00171 * 1 2 3 29 29 H 0.96996 * 120.00571 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.47683 * 270.00443 * 13 12 2 31 31 H 1.09004 * 109.46993 * 30.00915 * 13 12 2 32 32 H 1.09005 * 109.46610 * 150.00073 * 13 12 2 33 33 H 0.96997 * 119.99967 * 244.99609 * 17 14 12 34 34 H 1.08997 * 110.48689 * 84.87856 * 20 18 17 35 35 H 1.09001 * 110.48394 * 322.23303 * 20 18 17 36 36 H 1.08999 * 110.03048 * 264.32059 * 21 20 18 37 37 H 1.08996 * 110.03060 * 142.89649 * 21 20 18 38 38 H 1.09002 * 110.03268 * 119.28653 * 22 21 20 39 39 H 1.08995 * 110.03391 * 240.66959 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1464 -2.2869 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4279 14 16 2.9704 0.1142 2.2862 15 8 2.8228 -0.5645 3.5258 16 8 2.6903 1.4973 2.1192 17 7 4.5437 -0.1042 1.8179 18 6 5.0139 0.4531 0.5473 19 1 4.1769 0.6314 -0.1279 20 6 6.0590 -0.4828 -0.1094 21 6 6.8722 0.4474 -1.0331 22 6 6.7199 1.8706 -0.4683 23 6 5.8189 1.7568 0.7788 24 1 6.4249 1.6756 1.6811 25 9 4.9583 2.8566 0.8630 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1614 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5968 0.4707 32 1 2.4630 -2.5818 1.9862 33 1 5.1540 -0.6010 2.3850 34 1 5.5630 -1.2597 -0.6912 35 1 6.7040 -0.9261 0.6492 36 1 6.4771 0.4042 -2.0480 37 1 7.9219 0.1540 -1.0279 38 1 7.6958 2.2679 -0.1890 39 1 6.2516 2.5183 -1.2093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339118272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:16 Heat of formation + Delta-G solvation = -159.975868 kcal Electronic energy + Delta-G solvation = -24050.052764 eV Core-core repulsion = 20453.372891 eV Total energy + Delta-G solvation = -3596.679873 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.120 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.45381 -38.98354 -38.24672 -37.86596 -36.87333 -34.51552 -34.48485 -30.91543 -29.04243 -27.96729 -27.25480 -26.98870 -22.60796 -22.05193 -21.43714 -20.47220 -18.77743 -18.45122 -18.27215 -17.86118 -17.25667 -16.80595 -16.26889 -15.74336 -15.46923 -15.19478 -14.91462 -14.67205 -14.46710 -14.16849 -13.81394 -13.68771 -13.37542 -13.23532 -13.13968 -13.06981 -12.96780 -12.73758 -12.65936 -12.55931 -12.21593 -12.18101 -12.12853 -12.06018 -11.84746 -11.56751 -11.31534 -11.14687 -10.48446 -10.31848 -9.66128 -8.05868 -6.20975 -0.30060 1.45978 1.49445 1.58909 1.99352 2.47421 2.61845 3.22911 3.41810 3.42209 3.52555 3.75300 3.93624 4.09859 4.29535 4.38117 4.44667 4.50527 4.64616 4.71772 4.79104 4.81236 4.97105 4.98849 5.02603 5.13641 5.17349 5.23139 5.27449 5.40889 5.46625 5.63030 5.69718 5.85634 6.08008 6.22486 6.31461 6.88934 7.48925 8.99049 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.009387 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.030900 B = 2982.059104 C = 4237.523545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.022 0.978 4 C -0.522 4.522 5 H 0.074 0.926 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.257 1.257 10 H -0.288 1.288 11 H -0.285 1.285 12 N -0.996 5.996 13 C 0.101 3.899 14 S 2.790 3.210 15 O -1.009 7.009 16 O -1.009 7.009 17 N -1.104 6.104 18 C 0.117 3.883 19 H 0.085 0.915 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.144 4.144 23 C 0.054 3.946 24 H 0.114 0.886 25 F -0.228 7.228 26 H 0.044 0.956 27 H 0.014 0.986 28 H 0.069 0.931 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.426 0.574 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.950 -5.103 3.858 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.040 0.960 4 C -0.561 4.561 5 H 0.092 0.908 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.180 1.180 10 H -0.215 1.215 11 H -0.211 1.211 12 N -0.838 5.838 13 C -0.044 4.044 14 S 2.799 3.201 15 O -0.993 6.993 16 O -0.993 6.993 17 N -0.865 5.865 18 C 0.009 3.991 19 H 0.103 0.897 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.183 4.183 23 C 0.016 3.984 24 H 0.132 0.868 25 F -0.209 7.209 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.262 0.738 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.405 -4.378 4.408 13.874 hybrid contribution -0.114 -0.244 -0.971 1.008 sum 12.291 -4.622 3.437 13.574 Atomic orbital electron populations 1.21955 0.98244 1.00004 0.99755 1.18422 0.91795 0.91333 0.81591 0.95992 1.21584 1.31420 1.12950 0.90143 0.90827 1.25672 0.95195 0.95496 1.01808 1.70034 1.37466 1.24099 1.24148 0.85568 0.78059 0.78897 0.79484 1.18028 1.21460 1.21092 1.57602 1.65066 1.22505 1.38669 1.21374 1.00363 0.80411 1.02292 1.01429 0.73454 0.72909 0.72309 1.93524 1.86502 1.76199 1.43115 1.93591 1.84572 1.34425 1.86673 1.55639 1.29636 1.70234 1.30981 1.22466 0.98983 0.93391 0.84299 0.89680 1.22538 0.96046 0.97358 0.99563 1.22045 1.01904 0.92552 0.98931 1.22684 1.00581 0.99342 0.95676 1.23344 0.90291 0.82727 1.02026 0.86783 1.92834 1.73301 1.56953 1.97766 0.93667 0.96653 0.91225 0.92886 0.93307 0.90264 0.90578 0.73781 0.90558 0.87803 0.91855 0.87891 0.87691 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 8.97 71.98 0.65 -6.14 16 2 C 0.27 13.29 1.98 44.25 0.09 13.37 16 3 H 0.02 1.25 6.71 -2.38 -0.02 1.24 16 4 C -0.52 -25.43 7.45 25.60 0.19 -25.24 16 5 H 0.07 3.38 7.33 -2.91 -0.02 3.36 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -50.56 11.32 21.44 0.24 -50.32 16 8 Si 0.95 39.91 29.54 68.60 2.03 41.93 16 9 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 N -1.00 -40.58 3.12 -520.44 -1.62 -42.21 16 13 C 0.10 3.40 9.28 127.77 1.19 4.59 16 14 S 2.79 109.72 6.01 -56.49 -0.34 109.38 16 15 O -1.01 -40.46 17.21 -128.00 -2.20 -42.67 16 16 O -1.01 -48.65 16.17 -128.00 -2.07 -50.72 16 17 N -1.10 -32.92 5.66 -163.92 -0.93 -33.84 16 18 C 0.12 3.63 3.26 46.31 0.15 3.78 16 19 H 0.09 3.44 6.58 -2.39 -0.02 3.42 16 20 C -0.12 -2.56 6.49 31.67 0.21 -2.36 16 21 C -0.12 -2.29 6.80 31.32 0.21 -2.08 16 22 C -0.14 -3.27 6.61 31.32 0.21 -3.07 16 23 C 0.05 1.56 4.35 31.70 0.14 1.70 16 24 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 25 F -0.23 -9.08 16.88 44.97 0.76 -8.32 16 26 H 0.04 2.01 7.67 -2.38 -0.02 1.99 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 29 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.67 7.02 -2.39 -0.02 2.65 16 32 H 0.08 2.13 7.79 -2.38 -0.02 2.11 16 33 H 0.43 9.28 8.82 -96.75 -0.85 8.42 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 Total: -1.00 -68.13 327.20 -0.46 -68.59 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.20 Total: 22.25 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 3.47 Total: -14.08 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -2.31 Total: -126.37 kcal Atomic # 8 Polarization: -89.11 SS G_CDS: -4.27 Total: -93.38 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.76 Total: -8.32 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: 109.72 SS G_CDS: -0.34 Total: 109.38 kcal Total: -68.13 -0.46 -68.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339118272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.383 kcal (2) G-P(sol) polarization free energy of solvation -68.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds