Wall clock time and date at job start Tue Mar 31 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50698 * 109.47102 * 120.00335 * 2 1 3 5 5 O 1.21280 * 120.00268 * 119.99885 * 4 2 1 6 6 N 1.34778 * 120.00017 * 299.99943 * 4 2 1 7 7 C 1.46504 * 120.00392 * 180.02562 * 6 4 2 8 8 C 1.50697 * 109.47092 * 179.97438 * 7 6 4 9 9 O 1.21289 * 120.00319 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.37090 * 120.00085 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00101 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00492 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99285 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00449 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47283 * 60.00009 * 15 13 11 17 17 H 1.48498 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47147 * 299.99902 * 15 13 11 19 19 C 1.50706 * 109.47197 * 239.99755 * 2 1 3 20 20 C 1.38216 * 120.01546 * 300.00336 * 19 2 1 21 21 C 1.38217 * 120.02581 * 179.97438 * 20 19 2 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 119.97904 * 19 2 1 25 25 F 1.35099 * 120.02540 * 0.04305 * 24 19 2 26 26 H 1.08999 * 109.47333 * 299.99684 * 1 2 3 27 27 H 1.09000 * 109.46989 * 59.99986 * 1 2 3 28 28 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99774 * 359.97438 * 6 4 2 30 30 H 1.09002 * 109.46790 * 299.99947 * 7 6 4 31 31 H 1.08997 * 109.46760 * 59.99766 * 7 6 4 32 32 H 0.97001 * 120.00106 * 359.97438 * 10 8 7 33 33 H 0.97004 * 119.99846 * 179.97438 * 14 13 11 34 34 H 1.08000 * 119.98383 * 0.02562 * 20 19 2 35 35 H 1.07997 * 119.97673 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 37 37 H 1.08002 * 120.01438 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1954 -0.9404 3.6508 8 6 1.6935 -0.2297 4.8812 9 8 0.9965 0.7567 4.7699 10 7 2.0199 -0.6896 6.1053 11 6 1.5629 -0.0434 7.2247 12 1 0.9416 0.8345 7.1256 13 6 1.8990 -0.5177 8.4867 14 7 2.6546 -1.5862 8.6072 15 14 1.2769 0.3631 10.0119 16 1 -0.2082 0.3631 10.0125 17 1 1.7728 -0.3363 11.2244 18 1 1.7718 1.7632 10.0115 19 6 2.0323 -0.7105 -1.2305 20 6 1.6985 -2.0337 -1.4495 21 6 2.1587 -2.6854 -2.5782 22 6 2.9538 -2.0148 -3.4892 23 6 3.2888 -0.6918 -3.2724 24 6 2.8279 -0.0378 -2.1421 25 9 3.1550 1.2556 -1.9289 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.1493 0.5388 2.5436 30 1 1.8324 -1.9682 3.6509 31 1 3.2854 -0.9400 3.6506 32 1 2.5777 -1.4782 6.1943 33 1 2.8896 -1.9172 9.4882 34 1 1.0772 -2.5584 -0.7388 35 1 1.8978 -3.7195 -2.7483 36 1 3.3165 -2.5262 -4.3685 37 1 3.9095 -0.1681 -3.9843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343508447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:16 Heat of formation + Delta-G solvation = -102.978606 kcal Electronic energy + Delta-G solvation = -22606.666555 eV Core-core repulsion = 18877.014318 eV Total energy + Delta-G solvation = -3729.652237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.03738 -40.22251 -38.84722 -38.03284 -34.49438 -34.36078 -33.67685 -31.40331 -30.68727 -29.73693 -27.62301 -25.08326 -24.34468 -22.88360 -21.99667 -19.90712 -19.53792 -18.15255 -17.80247 -17.30276 -16.52934 -16.13714 -15.72703 -15.44013 -15.27244 -15.23750 -14.51043 -14.31330 -14.19175 -14.00796 -13.66346 -13.40551 -13.25805 -12.80197 -12.39877 -12.27391 -12.19071 -12.14062 -11.86774 -11.64849 -11.28392 -11.11630 -11.06563 -10.52137 -10.33078 -9.68893 -9.64590 -9.09260 -8.83931 -8.78594 -8.65396 -8.12250 -6.53238 -3.95407 0.98665 1.08677 2.76732 3.12500 3.19099 3.21027 3.26725 3.56938 3.71811 4.09164 4.11506 4.28698 4.54602 4.74463 4.85163 4.91354 4.98184 5.05897 5.14055 5.15509 5.21338 5.51873 5.63874 5.72069 5.86939 5.88431 5.93166 5.93387 6.00949 6.04953 6.20608 6.27365 6.63864 6.73275 7.44086 7.76066 7.89700 8.38555 8.43939 9.02533 9.37036 9.84859 10.63564 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.036896 B = 0.002758 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.705915 B =10148.892233 C =10392.103178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.109 0.891 4 C 0.517 3.483 5 O -0.541 6.541 6 N -0.704 5.704 7 C 0.109 3.891 8 C 0.427 3.573 9 O -0.598 6.598 10 N -0.548 5.548 11 C -0.306 4.306 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.895 5.895 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.096 4.096 20 C -0.056 4.056 21 C -0.132 4.132 22 C -0.093 4.093 23 C -0.158 4.158 24 C 0.103 3.897 25 F -0.139 7.139 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.411 0.589 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -1.136 -21.250 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.127 0.873 4 C 0.302 3.698 5 O -0.418 6.418 6 N -0.358 5.358 7 C -0.019 4.019 8 C 0.213 3.787 9 O -0.484 6.484 10 N -0.183 5.183 11 C -0.435 4.435 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.097 4.097 20 C -0.074 4.074 21 C -0.150 4.150 22 C -0.111 4.111 23 C -0.177 4.177 24 C 0.084 3.916 25 F -0.117 7.117 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.249 0.751 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.186 -1.241 -21.155 21.224 hybrid contribution 0.042 0.486 1.040 1.149 sum -1.144 -0.755 -20.115 20.162 Atomic orbital electron populations 1.21808 0.91385 1.03259 1.03380 1.20200 0.98248 1.00733 0.90347 0.87285 1.20269 0.80529 0.84735 0.84250 1.90702 1.37996 1.26365 1.86758 1.45684 1.53222 1.32488 1.04450 1.20962 0.99934 0.96573 0.84406 1.19733 0.86696 0.87731 0.84532 1.90494 1.43133 1.28755 1.86044 1.41791 1.44935 1.27399 1.04172 1.19684 1.29758 1.11159 0.82946 0.87711 1.25331 0.96542 0.96348 0.99465 1.69609 1.35827 1.22510 1.25533 0.85867 0.79171 0.79197 0.79704 1.19752 1.20837 1.19757 1.19381 0.99641 0.95313 0.95346 1.20857 0.97764 0.92548 0.96238 1.21183 0.98865 1.00359 0.94588 1.20989 0.97271 0.93496 0.99387 1.21062 1.03128 0.96066 0.97447 1.17525 0.98824 0.79061 0.96207 1.91479 1.91022 1.34425 1.94822 0.90886 0.91221 0.91650 0.75050 0.89811 0.89866 0.77030 0.91507 0.85156 0.85367 0.85202 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.90 37.15 0.33 -1.07 16 2 C -0.07 -0.91 2.89 -92.93 -0.27 -1.18 16 3 H 0.11 1.28 7.13 -51.93 -0.37 0.91 16 4 C 0.52 8.06 7.02 -10.99 -0.08 7.98 16 5 O -0.54 -9.91 15.11 5.56 0.08 -9.83 16 6 N -0.70 -11.56 5.42 -61.47 -0.33 -11.89 16 7 C 0.11 1.99 6.15 -5.19 -0.03 1.96 16 8 C 0.43 9.73 7.85 -10.99 -0.09 9.64 16 9 O -0.60 -15.13 15.24 5.55 0.08 -15.05 16 10 N -0.55 -13.54 5.29 -10.96 -0.06 -13.59 16 11 C -0.31 -8.28 9.68 -14.94 -0.14 -8.43 16 12 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 14 N -0.89 -23.83 13.05 55.50 0.72 -23.10 16 15 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C -0.10 -1.18 4.40 -104.55 -0.46 -1.64 16 20 C -0.06 -0.64 7.93 -39.60 -0.31 -0.95 16 21 C -0.13 -1.25 10.04 -39.58 -0.40 -1.65 16 22 C -0.09 -0.82 10.04 -39.59 -0.40 -1.21 16 23 C -0.16 -1.57 10.03 -39.51 -0.40 -1.97 16 24 C 0.10 1.24 7.25 -39.42 -0.29 0.96 16 25 F -0.14 -1.76 16.19 2.25 0.04 -1.72 16 26 H 0.07 0.72 7.56 -51.93 -0.39 0.32 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 29 H 0.41 6.60 6.86 -40.82 -0.28 6.32 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.40 9.41 7.90 -40.82 -0.32 9.08 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.13 1.45 7.52 -52.49 -0.39 1.06 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -31.31 327.28 -6.37 -37.68 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -4.19 Total: 14.11 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.62 Total: 3.03 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.33 Total: -48.59 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.17 Total: -24.88 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.31 -6.37 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.295 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds