Wall clock time and date at job start Tue Mar 31 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50698 * 109.47102 * 120.00335 * 2 1 3 5 5 O 1.21280 * 120.00268 * 119.99885 * 4 2 1 6 6 N 1.34778 * 120.00017 * 299.99943 * 4 2 1 7 7 C 1.46504 * 120.00392 * 180.02562 * 6 4 2 8 8 C 1.50697 * 109.47092 * 179.97438 * 7 6 4 9 9 O 1.21289 * 120.00319 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.37090 * 120.00085 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00101 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00492 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99285 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00449 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47283 * 60.00009 * 15 13 11 17 17 H 1.48498 * 109.47038 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47147 * 299.99902 * 15 13 11 19 19 C 1.50706 * 109.47197 * 239.99755 * 2 1 3 20 20 C 1.38216 * 120.01546 * 300.00336 * 19 2 1 21 21 C 1.38217 * 120.02581 * 179.97438 * 20 19 2 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 119.97904 * 19 2 1 25 25 F 1.35099 * 120.02540 * 0.04305 * 24 19 2 26 26 H 1.08999 * 109.47333 * 299.99684 * 1 2 3 27 27 H 1.09000 * 109.46989 * 59.99986 * 1 2 3 28 28 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99774 * 359.97438 * 6 4 2 30 30 H 1.09002 * 109.46790 * 299.99947 * 7 6 4 31 31 H 1.08997 * 109.46760 * 59.99766 * 7 6 4 32 32 H 0.97001 * 120.00106 * 359.97438 * 10 8 7 33 33 H 0.97004 * 119.99846 * 179.97438 * 14 13 11 34 34 H 1.08000 * 119.98383 * 0.02562 * 20 19 2 35 35 H 1.07997 * 119.97673 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 37 37 H 1.08002 * 120.01438 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1954 -0.9404 3.6508 8 6 1.6935 -0.2297 4.8812 9 8 0.9965 0.7567 4.7699 10 7 2.0199 -0.6896 6.1053 11 6 1.5629 -0.0434 7.2247 12 1 0.9416 0.8345 7.1256 13 6 1.8990 -0.5177 8.4867 14 7 2.6546 -1.5862 8.6072 15 14 1.2769 0.3631 10.0119 16 1 -0.2082 0.3631 10.0125 17 1 1.7728 -0.3363 11.2244 18 1 1.7718 1.7632 10.0115 19 6 2.0323 -0.7105 -1.2305 20 6 1.6985 -2.0337 -1.4495 21 6 2.1587 -2.6854 -2.5782 22 6 2.9538 -2.0148 -3.4892 23 6 3.2888 -0.6918 -3.2724 24 6 2.8279 -0.0378 -2.1421 25 9 3.1550 1.2556 -1.9289 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.1493 0.5388 2.5436 30 1 1.8324 -1.9682 3.6509 31 1 3.2854 -0.9400 3.6506 32 1 2.5777 -1.4782 6.1943 33 1 2.8896 -1.9172 9.4882 34 1 1.0772 -2.5584 -0.7388 35 1 1.8978 -3.7195 -2.7483 36 1 3.3165 -2.5262 -4.3685 37 1 3.9095 -0.1681 -3.9843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343508447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:16 Heat of formation + Delta-G solvation = -123.682619 kcal Electronic energy + Delta-G solvation = -22607.564349 eV Core-core repulsion = 18877.014318 eV Total energy + Delta-G solvation = -3730.550030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.93635 -41.40816 -40.24196 -39.39967 -36.27090 -35.44432 -35.16385 -33.38525 -31.46335 -30.64672 -29.12132 -26.62119 -25.59168 -23.72755 -22.97297 -21.40722 -21.02445 -20.07425 -18.65565 -18.58820 -17.52833 -17.45830 -16.96859 -16.71762 -16.62178 -16.44102 -16.22661 -15.70948 -15.54001 -15.08314 -14.85974 -14.65487 -14.14493 -13.98276 -13.84045 -13.55234 -13.44964 -13.21925 -12.97745 -12.92887 -12.86377 -12.48140 -12.15501 -12.13613 -11.86949 -11.57395 -10.94330 -10.58007 -10.23390 -10.09889 -9.87730 -9.60874 -8.52136 -6.02528 0.18389 0.30478 1.37151 1.42197 1.52214 1.53070 1.89578 1.98534 2.30446 2.70690 3.10573 3.14984 3.28801 3.39725 3.64768 3.88084 4.07387 4.11687 4.21044 4.23068 4.40186 4.40794 4.42442 4.45137 4.74145 4.82821 4.96870 5.10451 5.15714 5.22916 5.24506 5.37102 5.42817 5.51213 5.90204 5.97292 6.42747 6.49431 7.01990 7.10200 7.42625 7.92685 8.64568 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.036896 B = 0.002758 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.705915 B =10148.892233 C =10392.103178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 H 0.112 0.888 4 C 0.519 3.481 5 O -0.568 6.568 6 N -0.705 5.705 7 C 0.121 3.879 8 C 0.432 3.568 9 O -0.623 6.623 10 N -0.559 5.559 11 C -0.338 4.338 12 H 0.087 0.913 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.114 4.114 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.087 4.087 23 C -0.160 4.160 24 C 0.079 3.921 25 F -0.149 7.149 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.414 0.586 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.165 0.835 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -1.610 -22.489 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 H 0.130 0.870 4 C 0.306 3.694 5 O -0.447 6.447 6 N -0.359 5.359 7 C -0.006 4.006 8 C 0.220 3.780 9 O -0.511 6.511 10 N -0.194 5.194 11 C -0.468 4.468 12 H 0.105 0.895 13 C -0.211 4.211 14 N -0.556 5.556 15 Si 0.820 3.180 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.195 1.195 19 C -0.116 4.116 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.105 4.105 23 C -0.178 4.178 24 C 0.059 3.941 25 F -0.128 7.128 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.252 0.748 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.238 -1.719 -22.414 22.514 hybrid contribution 0.083 0.592 1.314 1.443 sum -1.155 -1.127 -21.101 21.162 Atomic orbital electron populations 1.21809 0.89636 1.03688 1.04224 1.20185 0.99638 1.00281 0.88759 0.87016 1.20839 0.79634 0.84309 0.84582 1.90680 1.39202 1.27695 1.87117 1.45709 1.53433 1.32536 1.04256 1.20779 1.00214 0.96610 0.83039 1.20406 0.85343 0.87092 0.85204 1.90471 1.44047 1.29959 1.86670 1.41844 1.45488 1.27670 1.04439 1.19708 1.31030 1.11595 0.84427 0.89532 1.26135 0.96307 0.96883 1.01773 1.69676 1.36213 1.23265 1.26478 0.84929 0.78673 0.78113 0.76297 1.19385 1.19617 1.19523 1.19462 1.00643 0.95952 0.95511 1.20977 0.98456 0.92424 0.97216 1.21538 0.98137 1.01485 0.93784 1.21410 0.96070 0.92978 1.00043 1.21403 1.02785 0.96699 0.96948 1.17821 0.99838 0.79012 0.97381 1.91447 1.91222 1.35081 1.95004 0.90912 0.89463 0.91436 0.74773 0.88571 0.89099 0.76720 0.91035 0.85578 0.82947 0.81792 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.90 71.98 0.64 -1.95 16 2 C -0.07 -1.63 2.89 -12.29 -0.04 -1.67 16 3 H 0.11 2.62 7.13 -2.39 -0.02 2.60 16 4 C 0.52 16.06 7.02 87.66 0.62 16.67 16 5 O -0.57 -20.69 15.11 -3.03 -0.05 -20.73 16 6 N -0.71 -23.01 5.42 -466.78 -2.53 -25.54 16 7 C 0.12 4.42 6.15 85.63 0.53 4.94 16 8 C 0.43 19.88 7.85 87.66 0.69 20.57 16 9 O -0.62 -32.00 15.24 -3.06 -0.05 -32.05 16 10 N -0.56 -28.03 5.29 -306.99 -1.62 -29.66 16 11 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 12 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 13 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 14 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 15 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 C -0.11 -2.76 4.40 -19.82 -0.09 -2.84 16 20 C -0.07 -1.58 7.93 22.26 0.18 -1.41 16 21 C -0.13 -2.19 10.04 22.27 0.22 -1.97 16 22 C -0.09 -1.27 10.04 22.26 0.22 -1.04 16 23 C -0.16 -2.84 10.03 22.31 0.22 -2.62 16 24 C 0.08 1.83 7.25 22.38 0.16 1.99 16 25 F -0.15 -3.73 16.19 44.97 0.73 -3.00 16 26 H 0.07 1.38 7.56 -2.39 -0.02 1.36 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.25 7.39 -2.39 -0.02 1.23 16 29 H 0.41 13.26 6.86 -92.70 -0.64 12.63 16 30 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.40 19.23 7.90 -92.71 -0.73 18.49 16 33 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.13 2.76 7.52 -2.91 -0.02 2.74 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -66.98 327.28 3.19 -63.79 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.24 Total: 39.09 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 4.64 Total: 12.83 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.87 Total: -103.57 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.09 Total: -52.78 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.73 Total: -3.00 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -66.98 3.19 -63.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.896 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds