Wall clock time and date at job start Tue Mar 31 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48504 * 109.47387 * 240.00024 * 3 2 1 5 5 H 1.48496 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47280 * 120.00141 * 3 2 1 7 7 C 1.38952 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00353 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00272 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99980 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99961 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47065 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00139 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99731 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.46827 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47204 * 179.97438 * 17 16 14 19 19 C 1.38250 * 119.97575 * 270.32991 * 18 17 16 20 20 C 1.38194 * 120.02377 * 180.27953 * 19 18 17 21 21 C 1.38460 * 119.97497 * 359.41202 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 0.96996 * 120.00550 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99878 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46943 * 59.99985 * 12 10 9 28 28 H 1.09003 * 109.47019 * 300.00366 * 12 10 9 29 29 H 0.97001 * 120.00415 * 0.02562 * 13 12 10 30 30 H 1.09000 * 109.46963 * 59.99926 * 16 14 13 31 31 H 1.08995 * 109.46954 * 299.99991 * 16 14 13 32 32 H 1.09007 * 109.46864 * 60.00093 * 17 16 14 33 33 H 1.08994 * 109.47451 * 300.00436 * 17 16 14 34 34 H 1.07998 * 119.98560 * 359.97438 * 19 18 17 35 35 H 1.08002 * 120.01531 * 179.69754 * 20 19 18 36 36 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 37 37 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2440 -4.8629 0.0000 13 7 2.1960 -5.9764 -0.0007 14 6 1.7468 -7.2471 -0.0009 15 8 0.5544 -7.4688 0.0001 16 6 2.7262 -8.3926 -0.0010 17 6 1.9612 -9.7176 -0.0006 18 6 2.9405 -10.8630 -0.0014 19 6 3.3937 -11.3834 -1.1993 20 6 4.2873 -12.4376 -1.2013 21 6 4.7381 -12.9646 -0.0028 22 9 5.6164 -13.9912 -0.0035 23 6 4.2883 -12.4384 1.1964 24 6 3.3906 -11.3877 1.1958 25 1 -0.4851 0.8400 -0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6170 -4.9209 -0.8897 28 1 0.6176 -4.9204 0.8903 29 1 3.1497 -5.7991 -0.0011 30 1 3.3529 -8.3349 0.8889 31 1 3.3528 -8.3346 -0.8910 32 1 1.3342 -9.7754 -0.8904 33 1 1.3348 -9.7752 0.8895 34 1 3.0455 -10.9692 -2.1339 35 1 4.6375 -12.8473 -2.1372 36 1 4.6395 -12.8484 2.1318 37 1 3.0399 -10.9769 2.1310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344170977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:28 Heat of formation + Delta-G solvation = -131.563571 kcal Electronic energy + Delta-G solvation = -21520.845896 eV Core-core repulsion = 17789.954122 eV Total energy + Delta-G solvation = -3730.891774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.87164 -41.05288 -40.19186 -39.70080 -36.25209 -35.26905 -34.79207 -33.37295 -32.04835 -30.79632 -29.00856 -26.60495 -25.05821 -23.97035 -22.18697 -21.36770 -21.18335 -20.05282 -18.65032 -18.49698 -17.44718 -17.27141 -17.03449 -16.81701 -16.57391 -16.41136 -16.08162 -15.83136 -15.65924 -15.02403 -14.66261 -14.61679 -14.38365 -13.96744 -13.93111 -13.68089 -13.53240 -13.34076 -12.89071 -12.63185 -12.46971 -12.40619 -12.13704 -12.12976 -11.74342 -11.56047 -10.97447 -10.55484 -10.16865 -10.07107 -10.02834 -9.49788 -8.50872 -6.01200 0.15997 0.31499 1.38276 1.43105 1.53887 1.65612 1.91895 2.08334 2.33144 2.65218 3.14604 3.16265 3.33313 3.66009 3.80323 4.00183 4.04036 4.17757 4.18538 4.33826 4.39983 4.43366 4.48375 4.49838 4.72817 4.92022 5.06337 5.07296 5.20578 5.22666 5.31656 5.34786 5.39137 5.63690 5.91886 5.96690 6.46713 6.58200 7.03547 7.22505 7.44965 7.94743 8.65676 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.042017 B = 0.002088 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.236960 B =13404.417520 C =13755.105487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.711 5.711 14 C 0.511 3.489 15 O -0.583 6.583 16 C -0.125 4.125 17 C -0.058 4.058 18 C -0.092 4.092 19 C -0.089 4.089 20 C -0.156 4.156 21 C 0.070 3.930 22 F -0.152 7.152 23 C -0.156 4.156 24 C -0.089 4.089 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.414 0.586 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -22.165 -0.004 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.008 4.008 13 N -0.365 5.365 14 C 0.300 3.700 15 O -0.463 6.463 16 C -0.165 4.165 17 C -0.096 4.096 18 C -0.092 4.092 19 C -0.107 4.107 20 C -0.174 4.174 21 C 0.051 3.949 22 F -0.131 7.131 23 C -0.174 4.174 24 C -0.107 4.107 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.252 0.748 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.147 -22.171 -0.004 22.760 hybrid contribution 0.318 0.827 0.000 0.886 sum 5.465 -21.344 -0.003 22.033 Atomic orbital electron populations 1.69669 1.06990 1.29698 1.49234 1.26136 0.96554 1.02717 0.95811 0.84926 0.77711 0.76236 0.79111 1.19473 1.19692 1.19484 1.19698 0.92968 0.83575 1.50471 0.89555 1.41861 1.09598 1.04676 1.63458 1.20484 0.88153 0.85988 0.83478 1.90470 1.15175 1.87570 1.58024 1.20754 0.91858 0.84083 1.04072 1.45824 1.11320 1.04777 1.74570 1.21338 0.89986 0.83994 0.74684 1.90682 1.18626 1.85260 1.51747 1.21671 0.97484 0.90511 1.06787 1.20245 0.95419 0.89395 1.04495 1.20014 0.98233 0.97562 0.93427 1.21192 0.95655 0.94899 0.98965 1.21355 0.99976 0.98654 0.97461 1.18044 0.92741 0.88453 0.95710 1.91471 1.67016 1.57101 1.97539 1.21358 0.99928 0.98713 0.97449 1.21192 0.95627 0.94920 0.98973 0.91072 0.76722 0.88956 0.88948 0.74762 0.86743 0.86738 0.90353 0.90343 0.83270 0.83481 0.83481 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.27 29.55 68.60 2.03 43.30 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.34 -18.38 9.68 84.04 0.81 -17.57 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.71 5.29 -306.99 -1.62 -29.33 16 10 C 0.43 19.42 7.85 87.66 0.69 20.10 16 11 O -0.62 -31.44 15.24 -3.06 -0.05 -31.49 16 12 C 0.12 4.20 6.15 85.63 0.53 4.72 16 13 N -0.71 -21.25 5.53 -466.77 -2.58 -23.83 16 14 C 0.51 13.62 7.83 87.66 0.69 14.31 16 15 O -0.58 -19.40 15.98 -3.02 -0.05 -19.45 16 16 C -0.13 -2.12 5.68 29.85 0.17 -1.95 16 17 C -0.06 -0.93 4.63 29.85 0.14 -0.80 16 18 C -0.09 -1.33 5.13 -19.86 -0.10 -1.44 16 19 C -0.09 -1.21 9.70 22.26 0.22 -1.00 16 20 C -0.16 -2.28 10.03 22.31 0.22 -2.06 16 21 C 0.07 1.18 7.30 22.38 0.16 1.35 16 22 F -0.15 -2.94 17.27 44.97 0.78 -2.17 16 23 C -0.16 -2.28 10.03 22.31 0.22 -2.06 16 24 C -0.09 -1.22 9.70 22.26 0.22 -1.00 16 25 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 27 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 28 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.41 12.12 7.44 -92.71 -0.69 11.43 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.36 8.04 -2.38 -0.02 1.34 16 33 H 0.08 1.36 8.04 -2.39 -0.02 1.35 16 34 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -66.12 334.13 2.92 -63.20 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.30 Total: 35.21 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 4.43 Total: 12.49 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -3.92 Total: -101.09 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -0.09 Total: -50.94 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -66.12 2.92 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344170977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.359 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds