Wall clock time and date at job start Tue Mar 31 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47163 * 2 1 4 4 N 1.46505 * 109.47058 * 179.97438 * 3 2 1 5 5 C 1.33298 * 120.00035 * 82.96853 * 4 3 2 6 6 H 1.07990 * 120.00234 * 171.79529 * 5 4 3 7 7 C 1.46794 * 119.99984 * 351.78565 * 5 4 3 8 8 N 1.29310 * 119.99966 * 1.76059 * 7 5 4 9 9 Si 1.86796 * 120.00147 * 181.76224 * 7 5 4 10 10 H 1.48505 * 109.47025 * 59.99922 * 9 7 5 11 11 H 1.48494 * 109.47516 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47167 * 300.00250 * 9 7 5 13 13 C 1.34772 * 119.99825 * 262.96532 * 4 3 2 14 14 O 1.21525 * 119.99791 * 184.59331 * 13 4 3 15 15 C 1.47249 * 120.00128 * 4.59760 * 13 4 3 16 16 C 1.40088 * 120.61688 * 300.07606 * 15 13 4 17 17 C 1.38279 * 118.35961 * 180.27570 * 16 15 13 18 18 N 1.48020 * 120.23549 * 180.02562 * 17 16 15 19 19 O 1.31706 * 119.99617 * 180.02562 * 18 17 16 20 20 O 1.31694 * 120.00256 * 359.97438 * 18 17 16 21 21 C 1.38418 * 119.52249 * 0.02562 * 17 16 15 22 22 N 1.31835 * 121.24346 * 359.97438 * 21 17 16 23 23 C 1.32431 * 121.78356 * 359.97438 * 22 21 17 24 24 N 1.38192 * 119.83436 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47126 * 300.00350 * 1 2 3 26 26 H 1.08999 * 109.46921 * 60.00669 * 1 2 3 27 27 H 1.09000 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46827 * 239.99409 * 2 1 3 29 29 H 1.08998 * 109.46751 * 120.00095 * 2 1 3 30 30 H 1.08997 * 109.47262 * 59.99358 * 3 2 1 31 31 H 1.09005 * 109.47006 * 299.99736 * 3 2 1 32 32 H 0.96999 * 120.00332 * 179.97438 * 8 7 5 33 33 H 1.08005 * 120.82024 * 0.27760 * 16 15 13 34 34 H 1.08003 * 119.37690 * 179.97438 * 21 17 16 35 35 H 0.97009 * 119.99920 * 184.99476 * 24 23 22 36 36 H 0.96998 * 120.00246 * 5.00584 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1721 1.3009 -1.1448 6 1 5.2437 1.4328 -1.1655 7 6 3.4499 0.9657 -2.3781 8 7 2.1629 0.8411 -2.3602 9 14 4.3900 0.7189 -3.9732 10 1 5.3580 -0.3954 -3.8100 11 1 3.4371 0.3905 -5.0637 12 1 5.1226 1.9649 -4.3139 13 6 4.1784 1.5855 1.1593 14 8 5.3907 1.6693 1.1511 15 6 3.4452 1.6402 2.4350 16 6 2.4953 2.6428 2.6696 17 6 1.8383 2.6534 3.8863 18 7 0.8263 3.6935 4.1778 19 8 0.2037 3.6995 5.3385 20 8 0.5492 4.6135 3.2772 21 6 2.1338 1.6844 4.8295 22 7 3.0311 0.7486 4.5905 23 6 3.6893 0.6902 3.4428 24 7 4.6221 -0.3080 3.2353 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 1.6857 0.6199 -3.1751 33 1 2.2813 3.3890 1.9186 34 1 1.6195 1.6952 5.7792 35 1 5.1572 -0.3112 2.4262 36 1 4.7417 -1.0056 3.8986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352447433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:38 Heat of formation + Delta-G solvation = 34.018292 kcal Electronic energy + Delta-G solvation = -24312.237664 eV Core-core repulsion = 20608.446019 eV Total energy + Delta-G solvation = -3703.791644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.30037 -40.41056 -39.61921 -37.45828 -36.15182 -35.54241 -34.49536 -33.69668 -33.58224 -31.62880 -27.70793 -27.36142 -26.87075 -25.27035 -23.89901 -22.45234 -21.62760 -19.85941 -19.42924 -19.10786 -18.87233 -18.35224 -17.98257 -17.13122 -16.72341 -16.38507 -16.09636 -15.75614 -15.50335 -15.38095 -15.10919 -14.71101 -14.39703 -13.99262 -13.65127 -13.19116 -12.83849 -12.64812 -12.50988 -12.42186 -12.37231 -12.23857 -12.12554 -12.08270 -11.84395 -11.71298 -11.43318 -11.28623 -10.76951 -10.44711 -9.96704 -9.46552 -8.43561 -5.77304 -1.75299 -0.44200 0.01843 0.04577 1.32068 1.44020 1.49852 1.79208 2.03816 2.17516 2.26897 2.79399 2.94505 3.08890 3.15636 3.34812 3.58336 3.95345 4.14514 4.23868 4.35381 4.44448 4.51800 4.56739 4.77567 4.92346 5.00293 5.11090 5.17556 5.34808 5.58003 5.61824 5.67679 5.73345 5.91611 6.00316 6.41148 6.65348 7.05805 7.35980 8.01370 8.40061 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.005571 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.553651 B = 5025.020990 C = 5615.603293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C 0.110 3.890 4 N -0.392 5.392 5 C -0.383 4.383 6 H 0.086 0.914 7 C 0.018 3.982 8 N -0.824 5.824 9 Si 0.994 3.006 10 H -0.272 1.272 11 H -0.264 1.264 12 H -0.274 1.274 13 C 0.429 3.571 14 O -0.637 6.637 15 C -0.209 4.209 16 C 0.041 3.959 17 C -0.131 4.131 18 N 0.014 4.986 19 O -0.166 6.166 20 O -0.251 6.251 21 C 0.259 3.741 22 N -0.522 5.522 23 C 0.479 3.521 24 N -0.788 5.788 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.021 0.979 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.288 0.712 33 H 0.153 0.847 34 H 0.223 0.777 35 H 0.423 0.577 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -5.007 6.999 9.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C -0.013 4.013 4 N -0.102 5.102 5 C -0.511 4.511 6 H 0.104 0.896 7 C -0.194 4.194 8 N -0.457 5.457 9 Si 0.817 3.183 10 H -0.197 1.197 11 H -0.189 1.189 12 H -0.200 1.200 13 C 0.220 3.780 14 O -0.529 6.529 15 C -0.221 4.221 16 C 0.015 3.985 17 C -0.227 4.227 18 N 0.482 4.518 19 O -0.364 6.364 20 O -0.424 6.424 21 C 0.093 3.907 22 N -0.242 5.242 23 C 0.235 3.765 24 N -0.327 5.327 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.170 0.830 34 H 0.240 0.760 35 H 0.257 0.743 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.001 -6.052 7.102 9.543 hybrid contribution 0.213 0.836 -1.539 1.764 sum -1.788 -5.216 5.563 7.833 Atomic orbital electron populations 1.21508 0.94682 1.01354 1.01105 1.21703 0.96226 0.96297 1.00037 1.22154 0.78972 0.98786 1.01357 1.42834 1.06715 1.55363 1.05316 1.20541 0.93502 1.51466 0.85634 0.89648 1.27487 0.96026 0.94138 1.01747 1.69166 1.08259 1.37592 1.30662 0.84984 0.78257 0.78952 0.76089 1.19686 1.18853 1.19958 1.17328 0.86761 0.90906 0.82972 1.90556 1.14519 1.61203 1.86659 1.20208 1.03637 1.00210 0.98028 1.21310 0.88403 0.94755 0.94078 1.21015 1.02647 0.98046 1.00950 1.50245 0.99471 1.00854 1.01276 1.96197 1.51722 1.81944 1.06568 1.96308 1.73575 1.32194 1.40343 1.23142 0.87176 0.82599 0.97820 1.67854 1.11994 1.25657 1.18707 1.18668 0.85320 0.85348 0.87181 1.42493 1.37343 1.26089 1.26733 0.93735 0.92547 0.92282 0.90680 0.96063 0.93542 0.87766 0.89931 0.82973 0.76046 0.74296 0.74069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.91 71.98 0.71 -3.35 16 2 C -0.10 -3.99 5.46 30.59 0.17 -3.82 16 3 C 0.11 4.59 4.55 86.38 0.39 4.98 16 4 N -0.39 -18.53 2.55 -634.60 -1.62 -20.15 16 5 C -0.38 -19.46 9.71 86.71 0.84 -18.62 16 6 H 0.09 4.72 7.21 -2.92 -0.02 4.70 16 7 C 0.02 0.82 5.35 87.30 0.47 1.29 16 8 N -0.82 -35.66 7.37 23.26 0.17 -35.49 16 9 Si 0.99 36.93 29.65 68.60 2.03 38.96 16 10 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 12 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 13 C 0.43 19.68 6.26 86.61 0.54 20.22 16 14 O -0.64 -33.14 15.72 -3.79 -0.06 -33.20 16 15 C -0.21 -7.74 4.97 -19.88 -0.10 -7.84 16 16 C 0.04 1.43 7.22 22.73 0.16 1.59 16 17 C -0.13 -3.98 6.90 36.43 0.25 -3.73 16 18 N 0.01 0.46 4.98 -46.33 -0.23 0.23 16 19 O -0.17 -5.16 19.16 3.51 0.07 -5.10 16 20 O -0.25 -9.53 19.21 3.52 0.07 -9.46 16 21 C 0.26 6.32 10.72 84.74 0.91 7.22 16 22 N -0.52 -13.66 10.38 -192.45 -2.00 -15.66 16 23 C 0.48 14.76 7.76 133.70 1.04 15.80 16 24 N -0.79 -20.88 8.96 -54.97 -0.49 -21.37 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 28 H 0.07 3.22 5.90 -2.39 -0.01 3.20 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.81 4.24 -2.39 -0.01 1.80 16 31 H 0.10 4.73 5.85 -2.38 -0.01 4.72 16 32 H 0.29 11.50 8.26 -92.71 -0.77 10.73 16 33 H 0.15 5.55 7.00 -2.91 -0.02 5.53 16 34 H 0.22 3.70 7.56 -2.91 -0.02 3.68 16 35 H 0.42 12.98 7.03 -92.70 -0.65 12.33 16 36 H 0.43 8.01 8.95 -92.71 -0.83 7.18 16 Total: -1.00 -58.75 312.69 3.03 -55.72 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.31 Total: 31.76 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.39 Total: 13.75 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.17 Total: -92.43 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: 0.08 Total: -47.75 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -58.75 3.03 -55.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352447433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.740 kcal (2) G-P(sol) polarization free energy of solvation -58.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds