Wall clock time and date at job start Tue Mar 31 2020 03:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48498 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47343 * 300.00541 * 3 2 1 6 6 H 1.48496 * 109.46971 * 60.00495 * 3 2 1 7 7 C 1.37878 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99763 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00357 * 359.97438 * 7 2 1 10 10 O 1.42899 * 113.40919 * 46.79999 * 9 7 2 11 11 C 1.53491 * 114.20712 * 180.02562 * 9 7 2 12 12 N 1.47072 * 87.98544 * 139.65477 * 11 9 7 13 13 C 1.34775 * 136.05908 * 152.83772 * 12 11 9 14 14 O 1.21283 * 119.99925 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00069 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47138 * 180.02562 * 15 13 12 17 17 C 1.39671 * 119.99620 * 180.28206 * 16 15 13 18 18 C 1.38941 * 120.06354 * 359.44604 * 17 16 15 19 19 C 1.38096 * 119.97462 * 179.70406 * 18 17 16 20 20 C 1.38270 * 120.09630 * 0.59934 * 19 18 17 21 21 C 1.38491 * 120.12376 * 359.67460 * 20 19 18 22 22 F 1.35099 * 119.98704 * 180.02562 * 21 20 19 23 23 C 1.38342 * 120.02776 * 0.02562 * 21 20 19 24 24 C 1.47067 * 87.88310 * 333.10171 * 12 11 9 25 25 H 0.97003 * 120.00573 * 359.97438 * 1 2 3 26 26 H 0.96702 * 114.00497 * 313.20277 * 10 9 7 27 27 H 1.09004 * 113.46903 * 24.88190 * 11 9 7 28 28 H 1.08997 * 113.46847 * 254.43215 * 11 9 7 29 29 H 1.09009 * 109.46601 * 60.00324 * 15 13 12 30 30 H 1.08998 * 109.47035 * 300.00831 * 15 13 12 31 31 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 32 32 H 1.08005 * 120.01684 * 359.97438 * 18 17 16 33 33 H 1.08003 * 119.95487 * 180.27660 * 19 18 17 34 34 H 1.08007 * 119.93697 * 179.70142 * 20 19 18 35 35 H 1.07999 * 120.05503 * 180.02562 * 23 21 20 36 36 H 1.09006 * 113.46973 * 141.67341 * 24 12 11 37 37 H 1.08999 * 113.47198 * 272.11583 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.1894 -2.5419 -0.9561 11 6 2.1488 -3.7442 -0.0005 12 7 1.2100 -4.3575 0.9510 13 6 0.8346 -5.6113 1.2724 14 8 1.3287 -6.5583 0.6980 15 6 -0.1991 -5.8367 2.3456 16 7 -0.4309 -7.2743 2.5063 17 6 -1.3580 -7.7315 3.4455 18 6 -2.0529 -6.8245 4.2361 19 6 -2.9736 -7.2782 5.1599 20 6 -3.1963 -8.6348 5.3081 21 6 -2.5019 -9.5427 4.5261 22 9 -2.7220 -10.8675 4.6729 23 6 -1.5828 -9.0935 3.5948 24 6 0.8561 -3.0001 1.3928 25 1 -0.4851 0.8400 0.0004 26 1 -0.3743 -1.7561 -0.9532 27 1 3.1385 -3.5657 0.4202 28 1 2.1851 -4.2532 -0.9637 29 1 -1.1309 -5.3477 2.0610 30 1 0.1575 -5.4190 3.2871 31 1 0.0564 -7.9084 1.9572 32 1 -1.8762 -5.7648 4.1252 33 1 -3.5168 -6.5727 5.7712 34 1 -3.9136 -8.9871 6.0348 35 1 -1.0413 -9.8011 2.9845 36 1 -0.2046 -2.8775 1.6119 37 1 1.4979 -2.6213 2.1883 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356886890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:55 Heat of formation + Delta-G solvation = -60.026503 kcal Electronic energy + Delta-G solvation = -22568.621206 eV Core-core repulsion = 18840.831512 eV Total energy + Delta-G solvation = -3727.789694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.96076 -39.98265 -39.24324 -37.72230 -35.13807 -34.14634 -32.29238 -31.03053 -30.04174 -28.89154 -26.68127 -25.28890 -24.90221 -22.99755 -21.76789 -20.31186 -18.67837 -18.05235 -17.51119 -16.92891 -16.30900 -16.18998 -15.71181 -15.60890 -15.45915 -15.22172 -14.86152 -14.31900 -14.10859 -13.86029 -13.77900 -13.14916 -13.01170 -12.78628 -12.48723 -12.23387 -11.96924 -11.77996 -11.66313 -11.34415 -11.15876 -11.10783 -10.56048 -10.36918 -10.25071 -9.84830 -9.37637 -8.90375 -8.88525 -8.54828 -8.04929 -7.61876 -6.50174 -4.60684 1.13687 1.36132 2.90084 2.93374 3.07383 3.17789 3.21149 3.58869 3.61571 4.10394 4.29368 4.65409 4.69958 4.78233 4.98567 5.03727 5.26887 5.32668 5.34033 5.40746 5.46384 5.77457 5.84966 6.01039 6.04541 6.14107 6.25830 6.32308 6.34296 6.42197 6.54650 6.68932 6.98022 7.12517 7.53462 7.61581 7.69300 8.26954 8.43057 8.47516 9.11227 9.37958 10.56685 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.030798 B = 0.002876 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.938199 B = 9734.545035 C =10314.663009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.240 3.760 10 O -0.572 6.572 11 C 0.108 3.892 12 N -0.630 5.630 13 C 0.530 3.470 14 O -0.562 6.562 15 C 0.111 3.889 16 N -0.727 5.727 17 C 0.252 3.748 18 C -0.211 4.211 19 C -0.041 4.041 20 C -0.221 4.221 21 C 0.145 3.855 22 F -0.143 7.143 23 C -0.236 4.236 24 C 0.068 3.932 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.413 0.587 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 -8.715 9.431 13.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.198 3.802 10 O -0.385 6.385 11 C -0.014 4.014 12 N -0.363 5.363 13 C 0.319 3.681 14 O -0.443 6.443 15 C -0.017 4.017 16 N -0.357 5.357 17 C 0.146 3.854 18 C -0.234 4.234 19 C -0.060 4.060 20 C -0.242 4.242 21 C 0.125 3.875 22 F -0.121 7.121 23 C -0.259 4.259 24 C -0.054 4.054 25 H 0.085 0.915 26 H 0.252 0.748 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.251 0.749 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.160 -9.689 9.012 13.871 hybrid contribution 0.251 0.982 0.076 1.016 sum -3.910 -8.707 9.089 13.180 Atomic orbital electron populations 1.69254 1.06219 1.28254 1.50062 1.25084 0.95044 1.00022 0.92901 0.86242 0.80067 0.82080 0.77941 1.19394 1.20574 1.20609 1.21449 0.93986 0.89616 1.52169 0.90801 1.19485 0.85423 0.91102 0.84149 1.86050 1.44903 1.48391 1.59146 1.23387 0.93823 0.92059 0.92103 1.49650 1.42080 1.04548 1.40002 1.19771 0.83153 0.81580 0.83613 1.90638 1.58021 1.40689 1.54911 1.20991 0.99110 0.82992 0.98572 1.44485 1.43960 1.06295 1.40987 1.17479 0.88135 0.91663 0.88143 1.20785 1.02127 0.99479 1.01026 1.20723 0.95121 0.94492 0.95668 1.20840 1.05496 0.93259 1.04556 1.17326 0.96517 0.77140 0.96552 1.91479 1.93678 1.32099 1.94855 1.20422 1.05575 0.94755 1.05175 1.24286 1.00698 0.77387 1.03071 0.91526 0.74848 0.89415 0.91380 0.89004 0.89229 0.74887 0.85309 0.85107 0.85344 0.84979 0.91452 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.58 11.01 55.43 0.61 -20.97 16 2 C 0.07 1.70 5.40 -17.82 -0.10 1.61 16 3 Si 0.91 18.55 29.54 -169.99 -5.02 13.53 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.53 -12.63 8.69 -34.44 -0.30 -12.93 16 8 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.24 5.41 1.57 -91.40 -0.14 5.26 16 10 O -0.57 -14.03 13.53 -35.23 -0.48 -14.50 16 11 C 0.11 2.22 8.04 -8.51 -0.07 2.15 16 12 N -0.63 -12.18 3.69 -185.37 -0.68 -12.87 16 13 C 0.53 9.75 8.15 -10.98 -0.09 9.66 16 14 O -0.56 -11.81 16.44 5.56 0.09 -11.72 16 15 C 0.11 1.57 5.22 -5.19 -0.03 1.54 16 16 N -0.73 -9.89 5.70 -59.81 -0.34 -10.23 16 17 C 0.25 3.17 6.65 -83.80 -0.56 2.62 16 18 C -0.21 -2.38 9.31 -39.37 -0.37 -2.75 16 19 C -0.04 -0.41 10.04 -39.62 -0.40 -0.81 16 20 C -0.22 -2.32 10.02 -39.48 -0.40 -2.71 16 21 C 0.14 1.73 7.30 -39.45 -0.29 1.45 16 22 F -0.14 -1.76 17.27 2.25 0.04 -1.73 16 23 C -0.24 -2.89 9.87 -39.32 -0.39 -3.28 16 24 C 0.07 1.33 7.82 -8.64 -0.07 1.26 16 25 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 26 H 0.39 9.80 6.33 45.56 0.29 10.09 16 27 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.24 7.96 -51.92 -0.41 0.82 16 30 H 0.09 1.11 7.94 -51.93 -0.41 0.69 16 31 H 0.41 5.90 7.45 -40.82 -0.30 5.60 16 32 H 0.13 1.31 6.73 -52.48 -0.35 0.96 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -26.60 325.76 -7.75 -34.36 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -3.69 Total: 16.16 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.19 Total: 3.07 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.42 Total: -44.07 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.39 Total: -26.22 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.60 -7.75 -34.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356886890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.671 kcal (2) G-P(sol) polarization free energy of solvation -26.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds