Wall clock time and date at job start Tue Mar 31 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99658 * 2 1 4 4 N 1.46498 * 109.47027 * 136.88916 * 3 2 1 5 5 C 1.46504 * 120.00412 * 83.59225 * 4 3 2 6 6 C 1.50699 * 109.46914 * 90.00252 * 5 4 3 7 7 H 1.08006 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99943 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00222 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47055 * 59.99218 * 10 8 6 12 12 H 1.48499 * 109.47076 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46877 * 299.99398 * 10 8 6 14 14 C 1.34775 * 120.00054 * 263.59802 * 4 3 2 15 15 O 1.21630 * 120.00458 * 186.64876 * 14 4 3 16 16 C 1.47163 * 119.99894 * 6.64384 * 14 4 3 17 17 C 1.38404 * 126.88481 * 10.05729 * 16 14 4 18 18 C 1.39675 * 105.36129 * 179.86147 * 17 16 14 19 19 N 1.48013 * 126.06882 * 180.14664 * 18 17 16 20 20 O 1.21801 * 119.99860 * 180.28132 * 19 18 17 21 21 O 1.21797 * 120.00291 * 0.28305 * 19 18 17 22 22 N 1.30859 * 107.85803 * 0.40801 * 18 17 16 23 23 N 1.28437 * 110.92916 * 359.73724 * 22 18 17 24 24 C 1.46501 * 125.18958 * 180.02562 * 23 22 18 25 25 H 1.08000 * 120.00209 * 179.14719 * 1 2 3 26 26 H 1.08006 * 119.99824 * 359.14836 * 1 2 3 27 27 H 1.07995 * 120.00106 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47524 * 16.88754 * 3 2 1 29 29 H 1.09002 * 109.46921 * 256.88525 * 3 2 1 30 30 H 1.08997 * 109.47218 * 210.00504 * 5 4 3 31 31 H 1.09005 * 109.46786 * 330.00435 * 5 4 3 32 32 H 0.96996 * 120.00032 * 180.02562 * 9 8 6 33 33 H 1.08002 * 127.32062 * 359.97438 * 17 16 14 34 34 H 1.08996 * 109.47560 * 274.69304 * 24 23 22 35 35 H 1.09007 * 109.47232 * 34.69456 * 24 23 22 36 36 H 1.09005 * 109.47276 * 154.68856 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.1809 1.2239 0.9439 5 6 4.4490 0.6197 0.5278 6 6 5.3456 1.6831 -0.0522 7 1 5.0048 2.7065 -0.1059 8 6 6.6006 1.3492 -0.5153 9 7 7.0155 0.1029 -0.4503 10 14 7.7124 2.6675 -1.2336 11 1 7.9737 3.7080 -0.2068 12 1 8.9977 2.0550 -1.6555 13 1 7.0495 3.2873 -2.4090 14 6 3.0423 1.7050 2.1953 15 8 4.0029 1.7486 2.9400 16 6 1.7286 2.1777 2.6605 17 6 0.5133 2.0196 2.0173 18 6 -0.4278 2.6308 2.8490 19 7 -1.8833 2.7240 2.5970 20 8 -2.6052 3.2895 3.3987 21 8 -2.3593 2.2352 1.5881 22 7 0.2067 3.1113 3.8877 23 7 1.4650 2.8654 3.8109 24 6 2.4649 3.2617 4.8056 25 1 -0.5400 -0.9352 -0.0139 26 1 -0.5400 0.9353 0.0139 27 1 1.8500 -0.9353 -0.0004 28 1 1.3935 2.1115 0.2985 29 1 2.4470 1.5032 -1.0009 30 1 4.9354 0.1653 1.3909 31 1 4.2573 -0.1445 -0.2254 32 1 7.8986 -0.1318 -0.7758 33 1 0.3311 1.5267 1.0738 34 1 2.7952 4.2804 4.6029 35 1 2.0252 3.2138 5.8019 36 1 3.3183 2.5856 4.7522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359411003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:35 Heat of formation + Delta-G solvation = 90.827544 kcal Electronic energy + Delta-G solvation = -23921.746468 eV Core-core repulsion = 20220.418258 eV Total energy + Delta-G solvation = -3701.328210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.64246 -43.09655 -40.80550 -38.01775 -37.78023 -35.47748 -34.91721 -34.02895 -32.76209 -30.02543 -29.52728 -27.36742 -26.71779 -25.72659 -24.09799 -22.86365 -21.56595 -21.13503 -19.92358 -19.34456 -19.04057 -18.66830 -18.10250 -17.90483 -17.69747 -17.10270 -16.33844 -16.13016 -15.83259 -15.17133 -14.66788 -14.41528 -14.28477 -14.10032 -13.73266 -13.51819 -13.21287 -12.94966 -12.88458 -12.82011 -12.59162 -12.41939 -12.41353 -12.22001 -11.94381 -11.74181 -11.24062 -11.11586 -10.86240 -10.63645 -10.30179 -9.70638 -8.23775 -6.37153 -1.09599 -0.36365 -0.31860 0.84631 0.92440 1.24740 1.40149 1.42044 1.49575 1.84023 2.05622 2.39583 2.72963 3.03394 3.09700 3.45376 3.65585 3.86772 3.95780 4.07021 4.12151 4.29137 4.41507 4.53816 4.67246 4.82901 4.90655 5.03010 5.09255 5.18195 5.40454 5.58082 5.65442 5.71289 5.89635 6.00730 6.38524 6.48546 6.68457 6.94480 7.33224 8.83517 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.004594 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.087854 B = 6092.921998 C = 6856.912289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.186 4.186 3 C 0.102 3.898 4 N -0.570 5.570 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.055 0.945 8 C 0.016 3.984 9 N -0.924 5.924 10 Si 0.961 3.039 11 H -0.277 1.277 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.576 3.424 15 O -0.560 6.560 16 C -0.018 4.018 17 C -0.150 4.150 18 C 0.048 3.952 19 N 0.069 4.931 20 O -0.166 6.166 21 O -0.114 6.114 22 N -0.206 5.206 23 N -0.207 5.207 24 C 0.063 3.937 25 H 0.128 0.872 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.011 0.989 31 H 0.038 0.962 32 H 0.268 0.732 33 H 0.233 0.767 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 3.410 4.121 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.205 4.205 3 C -0.019 4.019 4 N -0.299 5.299 5 C 0.145 3.855 6 C -0.583 4.583 7 H 0.073 0.927 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.206 1.206 13 H -0.188 1.188 14 C 0.362 3.638 15 O -0.440 6.440 16 C -0.146 4.146 17 C -0.178 4.178 18 C -0.186 4.186 19 N 0.593 4.407 20 O -0.376 6.376 21 O -0.336 6.336 22 N -0.051 5.051 23 N -0.002 5.002 24 C -0.074 4.074 25 H 0.146 0.854 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.249 0.751 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.037 3.886 5.650 13.853 hybrid contribution 0.742 0.030 -0.957 1.211 sum -11.294 3.916 4.694 12.842 Atomic orbital electron populations 1.24153 0.94704 1.04054 0.98067 1.23303 0.96679 0.98467 1.02038 1.21570 0.88072 0.97153 0.95150 1.47913 1.15273 1.56736 1.09959 1.18956 0.78952 0.92997 0.94643 1.21602 1.00724 0.95135 1.40845 0.92658 1.25714 0.99041 0.97576 0.96036 1.70009 1.20211 1.18775 1.47318 0.85557 0.78007 0.78930 0.78872 1.20292 1.20596 1.18810 1.16896 0.84988 0.78987 0.82943 1.90755 1.40400 1.57307 1.55542 1.21647 0.96229 1.05403 0.91290 1.23929 0.87640 1.02488 1.03727 1.22213 0.84412 1.13078 0.98849 1.42044 1.00116 0.98466 1.00042 1.94605 1.56896 1.43265 1.42874 1.94541 1.75693 1.46967 1.16405 1.72896 0.92228 1.18505 1.21477 1.46275 1.03957 1.33867 1.16140 1.23156 0.88831 1.04996 0.90455 0.85395 0.86280 0.87021 0.87424 0.88133 0.97078 0.94445 0.92322 0.75123 0.86558 0.84826 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 12.90 67.78 0.87 -2.35 16 2 C -0.19 -4.52 9.33 25.64 0.24 -4.28 16 3 C 0.10 2.94 5.36 85.63 0.46 3.40 16 4 N -0.57 -21.89 2.44 -834.68 -2.04 -23.93 16 5 C 0.26 12.80 5.13 85.63 0.44 13.23 16 6 C -0.54 -28.78 9.39 25.60 0.24 -28.54 16 7 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 8 C 0.02 0.87 5.46 84.66 0.46 1.33 16 9 N -0.92 -52.18 13.29 21.45 0.28 -51.89 16 10 Si 0.96 42.17 29.54 68.60 2.03 44.20 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 14 C 0.58 21.87 7.62 86.59 0.66 22.53 16 15 O -0.56 -24.67 14.26 -4.12 -0.06 -24.73 16 16 C -0.02 -0.55 6.74 40.79 0.27 -0.28 16 17 C -0.15 -4.01 8.19 22.66 0.19 -3.83 16 18 C 0.05 1.33 8.15 130.28 1.06 2.40 16 19 N 0.07 1.93 4.45 -49.55 -0.22 1.71 16 20 O -0.17 -4.91 19.23 18.89 0.36 -4.54 16 21 O -0.11 -2.91 19.05 18.89 0.36 -2.55 16 22 N -0.21 -5.77 11.87 -49.57 -0.59 -6.36 16 23 N -0.21 -5.60 3.75 -356.01 -1.33 -6.93 16 24 C 0.06 1.25 11.06 127.77 1.41 2.66 16 25 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.12 1.99 6.49 -2.91 -0.02 1.97 16 27 H 0.11 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.11 2.68 4.39 -2.39 -0.01 2.67 16 29 H 0.10 2.95 8.12 -2.39 -0.02 2.93 16 30 H 0.01 0.61 7.52 -2.39 -0.02 0.60 16 31 H 0.04 1.83 8.07 -2.38 -0.02 1.81 16 32 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 33 H 0.23 5.35 0.83 -2.91 0.00 5.34 16 34 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.12 2.82 5.91 -2.38 -0.01 2.81 16 Total: -1.00 -64.97 318.38 6.24 -58.73 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.14 Total: 10.03 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.31 Total: 6.27 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -3.90 Total: -87.41 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: 0.66 Total: -31.81 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -64.97 6.24 -58.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359411003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.555 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds