Wall clock time and date at job start Tue Mar 31 2020 04:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99700 * 2 1 4 4 H 1.48497 * 109.46851 * 273.61069 * 3 2 1 5 5 H 1.48504 * 109.46820 * 33.60695 * 3 2 1 6 6 H 1.48496 * 109.47071 * 153.60621 * 3 2 1 7 7 C 1.38942 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00161 * 341.27271 * 7 2 1 9 9 N 1.37094 * 120.00163 * 161.27194 * 7 2 1 10 10 C 1.34777 * 119.99989 * 320.26096 * 9 7 2 11 11 O 1.21294 * 120.00014 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00325 * 179.97438 * 10 9 7 13 13 C 1.52989 * 109.47281 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47128 * 180.02562 * 13 12 10 15 15 N 1.46507 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.33874 * 122.76214 * 269.70980 * 15 14 13 17 17 O 1.21224 * 125.39921 * 359.97438 * 16 15 14 18 18 C 1.51319 * 109.20244 * 179.84553 * 16 15 14 19 19 C 1.54223 * 103.55531 * 0.38361 * 18 16 15 20 20 C 1.33876 * 122.75991 * 89.99770 * 15 14 13 21 21 O 1.21229 * 125.39739 * 359.97438 * 20 15 14 22 22 C 1.46504 * 120.00394 * 140.25864 * 9 7 2 23 23 C 1.53004 * 117.49501 * 2.40089 * 22 9 7 24 24 C 1.53000 * 117.49847 * 293.74347 * 22 9 7 25 25 H 0.96993 * 120.00494 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46819 * 59.99796 * 12 10 9 27 27 H 1.09002 * 109.47115 * 300.00436 * 12 10 9 28 28 H 1.09000 * 109.47454 * 60.00071 * 13 12 10 29 29 H 1.09002 * 109.47310 * 300.00203 * 13 12 10 30 30 H 1.09000 * 109.46859 * 299.99752 * 14 13 12 31 31 H 1.08991 * 109.47325 * 60.00149 * 14 13 12 32 32 H 1.09001 * 110.79261 * 241.77608 * 18 16 15 33 33 H 1.09002 * 110.54938 * 118.88087 * 18 16 15 34 34 H 1.09003 * 110.60702 * 241.25839 * 19 18 16 35 35 H 1.09001 * 110.60276 * 118.29903 * 19 18 16 36 36 H 1.08997 * 115.55292 * 148.06567 * 22 9 7 37 37 H 1.09002 * 117.49817 * 359.97438 * 23 22 9 38 38 H 1.09004 * 117.49824 * 145.01829 * 23 22 9 39 39 H 1.09005 * 117.49781 * 214.97486 * 24 22 9 40 40 H 1.09000 * 117.49877 * 359.96862 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4192 2.0905 -1.3973 5 1 1.4856 2.6294 0.7750 6 1 3.5817 1.4195 0.6224 7 6 2.0089 -1.2032 0.0005 8 1 1.5119 -2.1137 0.3012 9 7 3.3254 -1.2348 -0.3806 10 6 3.7445 -0.4849 -1.4191 11 8 2.9569 0.2184 -2.0162 12 6 5.1918 -0.5191 -1.8379 13 6 5.3997 0.4155 -3.0311 14 6 6.8689 0.3803 -3.4566 15 7 7.0679 1.2748 -4.5997 16 6 6.9476 0.8663 -5.8689 17 8 6.6682 -0.2597 -6.2206 18 6 7.2126 2.0335 -6.7947 19 6 7.5197 3.1972 -5.8304 20 6 7.3905 2.5667 -4.4610 21 8 7.5529 3.1406 -3.4055 22 6 4.2769 -2.0837 0.3408 23 6 3.7291 -2.9535 1.4741 24 6 4.5820 -1.7239 1.7963 25 1 -0.4850 0.8399 -0.0004 26 1 5.4642 -1.5359 -2.1205 27 1 5.8180 -0.1926 -1.0076 28 1 5.1273 1.4323 -2.7481 29 1 4.7734 0.0895 -3.8615 30 1 7.4955 0.7062 -2.6263 31 1 7.1409 -0.6365 -3.7398 32 1 6.3323 2.2569 -7.3974 33 1 8.0714 1.8278 -7.4336 34 1 6.7922 3.9996 -5.9534 35 1 8.5323 3.5687 -5.9877 36 1 5.0911 -2.4916 -0.2581 37 1 2.6610 -2.8938 1.6832 38 1 4.1833 -3.9335 1.6210 39 1 5.5970 -1.8954 2.1550 40 1 4.0753 -0.8553 2.2169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520112721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:47 Heat of formation + Delta-G solvation = -59.215811 kcal Electronic energy + Delta-G solvation = -24001.090706 eV Core-core repulsion = 20396.796471 eV Total energy + Delta-G solvation = -3604.294235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.01572 -39.18949 -38.71094 -36.57123 -36.05652 -34.83165 -32.93760 -32.02574 -31.29910 -27.43907 -26.42460 -24.72452 -22.56967 -22.41486 -21.80560 -21.18873 -19.63074 -19.08312 -17.56887 -17.17873 -16.79637 -16.64346 -16.12953 -15.53309 -14.96575 -14.79267 -14.39453 -14.30163 -14.13894 -14.04020 -13.69000 -13.31857 -13.20413 -13.00413 -12.50058 -12.29688 -11.88221 -11.70335 -11.66489 -11.41535 -11.10200 -10.76999 -10.69358 -10.60551 -10.30991 -10.20305 -10.01214 -9.96651 -9.83259 -9.58926 -8.51327 -8.44993 -7.48492 -6.16035 -3.92862 1.31719 2.33525 2.53718 3.30154 3.50923 3.71215 3.80588 3.82710 3.94442 4.12928 4.32162 4.49975 4.51036 4.67275 4.92863 4.99085 5.10329 5.14650 5.23545 5.24742 5.28294 5.33451 5.43254 5.56434 5.59022 5.65799 5.74808 5.79557 5.93534 6.16082 6.27692 6.33505 6.50860 6.67498 6.68595 6.84867 7.12761 7.58983 7.86106 7.96864 8.78310 8.92186 9.45005 9.82086 10.87774 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.004416 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.035148 B = 6338.702261 C = 6814.571297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.089 3.911 3 Si 0.920 3.080 4 H -0.251 1.251 5 H -0.315 1.315 6 H -0.284 1.284 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.435 5.435 10 C 0.446 3.554 11 O -0.541 6.541 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.098 3.902 15 N -0.572 5.572 16 C 0.525 3.475 17 O -0.479 6.479 18 C -0.157 4.157 19 C -0.157 4.157 20 C 0.524 3.476 21 O -0.479 6.479 22 C 0.064 3.936 23 C -0.173 4.173 24 C -0.199 4.199 25 H 0.272 0.728 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.414 2.729 -9.552 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.120 4.120 3 Si 0.753 3.247 4 H -0.178 1.178 5 H -0.245 1.245 6 H -0.210 1.210 7 C -0.475 4.475 8 H 0.114 0.886 9 N -0.155 5.155 10 C 0.237 3.763 11 O -0.425 6.425 12 C -0.170 4.170 13 C -0.155 4.155 14 C -0.023 4.023 15 N -0.315 5.315 16 C 0.314 3.686 17 O -0.350 6.350 18 C -0.197 4.197 19 C -0.197 4.197 20 C 0.313 3.687 21 O -0.350 6.350 22 C -0.042 4.042 23 C -0.210 4.210 24 C -0.238 4.238 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.758 2.824 -9.454 20.315 hybrid contribution 0.331 0.685 0.277 0.809 sum 18.089 3.508 -9.178 20.585 Atomic orbital electron populations 1.69739 1.06850 1.28186 1.45513 1.25315 0.94976 0.99587 0.92085 0.86245 0.78617 0.81834 0.78042 1.17773 1.24505 1.20973 1.18786 0.83292 0.95979 1.49459 0.88598 1.43159 1.07782 1.39146 1.25453 1.20166 0.89728 0.84780 0.81660 1.90521 1.55684 1.41422 1.54866 1.21466 0.96557 1.00621 0.98317 1.21603 0.93719 1.01374 0.98789 1.21926 0.98912 0.94140 0.87317 1.46791 1.62266 1.12827 1.09647 1.20822 0.74800 0.89870 0.83147 1.90794 1.43463 1.21448 1.79326 1.22474 1.06344 0.92413 0.98467 1.22477 1.06602 0.99472 0.91145 1.20843 0.74395 0.81398 0.92103 1.90799 1.46282 1.65841 1.32109 1.21815 0.95665 0.98863 0.87877 1.23135 1.01619 0.93864 1.02406 1.23282 0.99904 1.00288 1.00321 0.91852 0.89734 0.89993 0.90918 0.90508 0.88878 0.88767 0.86072 0.86270 0.86106 0.86246 0.87094 0.87136 0.89426 0.89504 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.03 13.96 55.50 0.77 -26.26 16 2 C 0.09 2.68 4.88 -17.47 -0.09 2.59 16 3 Si 0.92 25.40 24.59 -169.99 -4.18 21.22 16 4 H -0.25 -7.26 6.09 56.52 0.34 -6.91 16 5 H -0.31 -8.56 7.11 56.52 0.40 -8.16 16 6 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.35 -9.94 8.77 -14.94 -0.13 -10.07 16 8 H 0.10 2.83 6.95 -52.48 -0.36 2.47 16 9 N -0.44 -10.57 2.56 -107.73 -0.28 -10.84 16 10 C 0.45 10.72 5.88 -10.98 -0.06 10.66 16 11 O -0.54 -15.22 10.87 5.55 0.06 -15.16 16 12 C -0.13 -2.25 4.33 -27.89 -0.12 -2.37 16 13 C -0.12 -1.96 4.83 -26.74 -0.13 -2.08 16 14 C 0.10 1.26 5.56 -4.04 -0.02 1.23 16 15 N -0.57 -6.79 2.55 -115.34 -0.29 -7.09 16 16 C 0.52 5.78 8.08 -11.08 -0.09 5.69 16 17 O -0.48 -6.99 17.47 5.61 0.10 -6.89 16 18 C -0.16 -0.90 7.03 -26.94 -0.19 -1.09 16 19 C -0.16 -0.92 7.03 -26.94 -0.19 -1.11 16 20 C 0.52 5.89 8.08 -11.09 -0.09 5.80 16 21 O -0.48 -7.20 17.48 5.60 0.10 -7.10 16 22 C 0.06 1.20 5.85 -67.93 -0.40 0.80 16 23 C -0.17 -2.98 9.80 -26.69 -0.26 -3.25 16 24 C -0.20 -3.42 10.37 -26.69 -0.28 -3.69 16 25 H 0.27 8.01 8.31 -40.82 -0.34 7.67 16 26 H 0.08 1.25 7.57 -51.93 -0.39 0.86 16 27 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 28 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 29 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 30 H 0.09 1.12 7.83 -51.93 -0.41 0.71 16 31 H 0.09 1.10 7.82 -51.93 -0.41 0.69 16 32 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 1.70 6.99 -51.93 -0.36 1.34 16 37 H 0.11 2.20 6.49 -51.93 -0.34 1.86 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -38.09 333.50 -6.42 -44.51 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.68 Total: -0.51 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.05 Total: 3.10 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.20 Total: -44.19 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: 0.26 Total: -29.16 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.18 Total: 21.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.09 -6.42 -44.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520112721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.703 kcal (2) G-P(sol) polarization free energy of solvation -38.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds