Wall clock time and date at job start Tue Mar 31 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99806 * 2 1 4 4 O 1.20828 * 120.00251 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00082 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47379 * 180.02562 * 5 3 2 7 7 C 1.36912 * 120.00049 * 270.00034 * 6 5 3 8 8 H 1.07997 * 120.00401 * 140.66224 * 7 6 5 9 9 C 1.39025 * 119.99840 * 320.66413 * 7 6 5 10 10 N 1.31383 * 119.99761 * 161.06158 * 9 7 6 11 11 Si 1.86796 * 119.99884 * 341.06076 * 9 7 6 12 12 H 1.48504 * 109.47459 * 95.56904 * 11 9 7 13 13 H 1.48502 * 109.47004 * 215.57159 * 11 9 7 14 14 H 1.48501 * 109.47432 * 335.56896 * 11 9 7 15 15 C 1.34775 * 120.00151 * 89.99911 * 6 5 3 16 16 O 1.21629 * 119.99953 * 4.94936 * 15 6 5 17 17 C 1.47345 * 120.00195 * 184.95221 * 15 6 5 18 18 C 1.39821 * 120.99719 * 315.92622 * 17 15 6 19 19 N 1.32197 * 118.99032 * 180.02562 * 18 17 15 20 20 C 1.31966 * 121.20085 * 359.97438 * 19 18 17 21 21 C 1.50698 * 118.87760 * 180.02562 * 20 19 18 22 22 N 1.31681 * 122.24188 * 0.02562 * 20 19 18 23 23 C 1.32970 * 120.85125 * 359.97438 * 22 20 19 24 24 N 1.37884 * 120.64261 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.47638 * 59.99879 * 1 2 3 26 26 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47207 * 299.99813 * 1 2 3 28 28 H 1.09001 * 109.46884 * 60.00020 * 5 3 2 29 29 H 1.09006 * 109.46846 * 300.00101 * 5 3 2 30 30 H 0.97000 * 119.99250 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.50773 * 0.03910 * 18 17 15 32 32 H 1.09003 * 109.46999 * 269.97572 * 21 20 19 33 33 H 1.08997 * 109.47663 * 29.97727 * 21 20 19 34 34 H 1.09004 * 109.47101 * 149.98489 * 21 20 19 35 35 H 0.96999 * 119.99811 * 3.56496 * 24 23 22 36 36 H 0.97002 * 119.99861 * 183.55702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.1752 3.3370 -1.1852 8 1 3.8608 4.3649 -1.2904 9 6 4.7765 2.6813 -2.2535 10 7 4.6361 3.1477 -3.4736 11 14 5.7839 1.1370 -1.9539 12 1 4.9326 -0.0598 -2.1736 13 1 6.9335 1.1060 -2.8934 14 1 6.2865 1.1371 -0.5565 15 6 4.1731 3.3253 1.1677 16 8 4.0893 2.7189 2.2187 17 6 4.4841 4.7655 1.1709 18 6 5.4138 5.3035 0.2757 19 7 5.6630 6.6012 0.3136 20 6 5.0513 7.3899 1.1769 21 6 5.3747 8.8617 1.1739 22 7 4.1679 6.9346 2.0408 23 6 3.8527 5.6433 2.0772 24 7 2.9274 5.1711 2.9840 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9556 0.7810 -0.8908 29 1 3.9563 0.7806 0.8892 30 1 5.0560 2.6903 -4.2189 31 1 5.9206 4.6685 -0.4359 32 1 6.2037 9.0529 1.8554 33 1 5.6540 9.1704 0.1666 34 1 4.5005 9.4265 1.4979 35 1 2.4616 5.7896 3.5682 36 1 2.7424 4.2204 3.0376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597273187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:54 Heat of formation + Delta-G solvation = -51.115924 kcal Electronic energy + Delta-G solvation = -24309.291150 eV Core-core repulsion = 20601.807809 eV Total energy + Delta-G solvation = -3707.483341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.65420 -39.99684 -38.55097 -36.11888 -35.46444 -34.73523 -32.87653 -32.20520 -30.70579 -29.42642 -28.01815 -26.48814 -25.13392 -23.25893 -22.55351 -21.05487 -19.56671 -17.99387 -17.81986 -17.37761 -16.87714 -16.70333 -15.96344 -15.56489 -15.34853 -15.10901 -14.71388 -14.40529 -13.94513 -13.63635 -13.30423 -13.05516 -12.73862 -12.65242 -12.53583 -12.40057 -12.11136 -11.95653 -11.69324 -11.22882 -11.15175 -10.84797 -10.66384 -10.45025 -10.21618 -10.02424 -9.49257 -9.31790 -8.92455 -8.67246 -8.15913 -7.84546 -6.65910 -4.32213 1.34969 1.97625 2.72150 2.85409 2.88281 3.09511 3.11612 3.56077 3.75530 3.89939 4.07727 4.41618 4.55446 4.78966 4.93222 5.27529 5.33006 5.35889 5.39931 5.54552 5.65503 5.69873 5.76498 5.80308 5.85258 5.88410 6.13736 6.36958 6.72972 6.95194 6.96646 7.28487 7.60244 7.77475 8.04488 8.10096 8.26529 8.64967 8.78966 9.00945 9.30044 10.42992 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.006842 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.844789 B = 4091.177546 C = 5283.638978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.106 3.894 6 N -0.436 5.436 7 C -0.352 4.352 8 H 0.109 0.891 9 C 0.069 3.931 10 N -0.842 5.842 11 Si 0.860 3.140 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.253 1.253 15 C 0.553 3.447 16 O -0.593 6.593 17 C -0.277 4.277 18 C 0.239 3.761 19 N -0.568 5.568 20 C 0.357 3.643 21 C -0.081 4.081 22 N -0.592 5.592 23 C 0.472 3.528 24 N -0.824 5.824 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.280 0.720 31 H 0.186 0.814 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.400 0.600 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -0.373 6.354 6.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.373 6.373 5 C -0.019 4.019 6 N -0.155 5.155 7 C -0.479 4.479 8 H 0.127 0.873 9 C -0.141 4.141 10 N -0.475 5.475 11 Si 0.686 3.314 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.177 1.177 15 C 0.343 3.657 16 O -0.478 6.478 17 C -0.290 4.290 18 C 0.077 3.923 19 N -0.288 5.288 20 C 0.088 3.912 21 C -0.139 4.139 22 N -0.318 5.318 23 C 0.225 3.775 24 N -0.368 5.368 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.203 0.797 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.229 0.771 36 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.956 0.532 6.605 6.909 hybrid contribution -0.438 -1.876 -0.067 1.928 sum -2.393 -1.344 6.538 7.091 Atomic orbital electron populations 1.23151 0.77387 1.02937 1.02290 1.86520 1.22765 1.34354 1.84870 1.24664 0.92743 0.81286 0.72400 1.90632 1.66564 1.36210 1.43855 1.21388 0.87038 0.88139 1.05292 1.43185 1.57483 1.08373 1.06502 1.19134 1.41122 1.00052 0.87631 0.87317 1.25376 0.95997 0.98078 0.94637 1.69721 1.39039 1.40286 0.98462 0.87158 0.81164 0.82808 0.80267 1.19446 1.20314 1.17668 1.17656 0.78616 0.86126 0.83281 1.90613 1.57273 1.68230 1.31692 1.20674 1.08457 0.95594 1.04274 1.23673 0.88618 0.90088 0.89951 1.68330 1.29708 1.05451 1.25325 1.22943 0.85911 0.97239 0.85093 1.20508 1.02484 0.87201 1.03748 1.67747 1.22065 1.13173 1.28862 1.18293 0.85576 0.88014 0.85579 1.42232 1.42788 1.12354 1.39468 0.92130 0.88628 0.92327 0.87615 0.86498 0.90966 0.79707 0.90039 0.89662 0.90205 0.77066 0.74542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.51 10.57 -39.26 -0.41 -6.93 16 3 C 0.45 9.43 8.02 36.00 0.29 9.72 16 4 O -0.49 -11.53 16.18 -18.75 -0.30 -11.84 16 5 C 0.11 2.25 4.81 -5.20 -0.02 2.22 16 6 N -0.44 -10.17 1.64 -117.35 -0.19 -10.37 16 7 C -0.35 -8.81 7.11 -14.99 -0.11 -8.92 16 8 H 0.11 3.00 6.74 -52.49 -0.35 2.65 16 9 C 0.07 1.70 5.35 -17.45 -0.09 1.60 16 10 N -0.84 -22.03 13.96 55.50 0.77 -21.25 16 11 Si 0.86 18.25 24.88 -169.99 -4.23 14.03 16 12 H -0.27 -5.42 6.73 56.52 0.38 -5.04 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.25 -5.29 7.11 56.52 0.40 -4.89 16 15 C 0.55 12.69 6.91 -12.56 -0.09 12.60 16 16 O -0.59 -13.75 14.84 5.25 0.08 -13.67 16 17 C -0.28 -6.03 5.24 -104.52 -0.55 -6.58 16 18 C 0.24 5.08 9.13 -16.80 -0.15 4.93 16 19 N -0.57 -11.34 10.30 -10.44 -0.11 -11.45 16 20 C 0.36 6.46 7.64 -157.14 -1.20 5.26 16 21 C -0.08 -1.04 10.31 36.00 0.37 -0.67 16 22 N -0.59 -11.15 10.35 -9.73 -0.10 -11.25 16 23 C 0.47 9.44 7.81 -154.86 -1.21 8.23 16 24 N -0.82 -14.08 8.92 31.40 0.28 -13.80 16 25 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.11 2.21 3.25 -51.93 -0.17 2.04 16 29 H 0.12 2.26 7.36 -51.93 -0.38 1.88 16 30 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.19 3.97 6.57 -52.49 -0.34 3.62 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 5.56 8.95 -40.82 -0.37 5.20 16 36 H 0.42 7.55 6.59 -40.82 -0.27 7.29 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -30.50 312.05 -4.78 -35.28 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -3.58 Total: 16.59 kcal Atomic # 6 Polarization: 31.66 SS G_CDS: -1.70 Total: 29.96 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: 0.65 Total: -68.12 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.64 Total: -32.44 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.23 Total: 14.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.50 -4.78 -35.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.836 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds