Wall clock time and date at job start Tue Mar 31 2020 03:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38429 * 119.99566 * 2 1 4 4 N 1.32601 * 119.13172 * 179.97438 * 3 2 1 5 5 C 1.32106 * 120.96321 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.37681 * 179.97438 * 5 4 3 7 7 C 1.38828 * 119.24341 * 359.75051 * 5 4 3 8 8 C 1.39493 * 118.42269 * 0.49404 * 7 5 4 9 9 C 1.48382 * 120.51108 * 179.78133 * 8 7 5 10 10 O 1.21393 * 119.99719 * 359.71812 * 9 8 7 11 11 O 1.34638 * 119.99936 * 179.97438 * 9 8 7 12 12 C 1.45201 * 116.99819 * 179.72711 * 11 9 8 13 13 C 1.50706 * 109.47067 * 179.97438 * 12 11 9 14 14 O 1.21293 * 119.99979 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99632 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99396 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00596 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99775 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00021 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99912 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47010 * 90.00238 * 20 18 16 22 22 H 1.48506 * 109.46935 * 210.00338 * 20 18 16 23 23 H 1.48501 * 109.47313 * 330.00637 * 20 18 16 24 24 N 1.32251 * 119.14158 * 0.02562 * 3 2 1 25 25 H 1.08995 * 109.47787 * 59.99665 * 1 2 3 26 26 H 1.09006 * 109.46879 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47006 * 299.99537 * 1 2 3 28 28 H 0.96994 * 120.00280 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47232 * 89.99869 * 6 5 4 30 30 H 1.09000 * 109.47235 * 210.00241 * 6 5 4 31 31 H 1.09005 * 109.47001 * 329.99807 * 6 5 4 32 32 H 1.08001 * 120.78574 * 180.25261 * 7 5 4 33 33 H 1.09003 * 109.47240 * 299.99654 * 12 11 9 34 34 H 1.08997 * 109.47282 * 59.99663 * 12 11 9 35 35 H 0.96993 * 120.00198 * 359.97438 * 15 13 12 36 36 H 0.96998 * 120.00128 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.1989 0.0000 4 7 3.4829 1.1789 0.0005 5 6 4.1796 2.3013 0.0010 6 6 5.6862 2.2632 0.0022 7 6 3.5081 3.5164 -0.0042 8 6 2.1132 3.5041 0.0007 9 6 1.3486 4.7757 0.0002 10 8 1.9369 5.8376 0.0008 11 8 0.0025 4.7518 0.0045 12 6 -0.6795 6.0337 0.0099 13 6 -2.1699 5.8098 0.0135 14 8 -2.6135 4.6809 0.0111 15 7 -3.0096 6.8640 0.0193 16 6 -4.3653 6.6602 0.0220 17 1 -4.7605 5.6551 0.0199 18 6 -5.2312 7.7470 0.0285 19 7 -4.7505 8.9701 0.0315 20 14 -7.0785 7.4694 0.0329 21 1 -7.5638 7.3908 1.4340 22 1 -7.7502 8.5975 -0.6612 23 1 -7.3899 6.1993 -0.6708 24 7 1.4787 2.3341 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 6.0502 2.2539 -1.0251 30 1 6.0715 3.1436 0.5164 31 1 6.0265 1.3643 0.5164 32 1 4.0527 4.4490 -0.0080 33 1 -0.3938 6.5935 0.9005 34 1 -0.3994 6.5981 -0.8794 35 1 -2.6548 7.7667 0.0215 36 1 -5.3549 9.7287 0.0357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805621316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:00 Heat of formation + Delta-G solvation = -57.084349 kcal Electronic energy + Delta-G solvation = -22500.300126 eV Core-core repulsion = 18792.557975 eV Total energy + Delta-G solvation = -3707.742151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39272 -40.06428 -38.11936 -36.43279 -36.05537 -34.50327 -33.97373 -31.89324 -31.35963 -28.91444 -28.47889 -26.54776 -25.54624 -24.30376 -22.39184 -21.20559 -19.57305 -18.95394 -18.07207 -17.44912 -16.97486 -16.49027 -16.23286 -15.72638 -15.57349 -15.30167 -14.96724 -14.52722 -14.07663 -13.96236 -13.94498 -13.58364 -12.99967 -12.98972 -12.67026 -12.33461 -12.25548 -12.03230 -11.60731 -11.23008 -11.12532 -10.87601 -10.85776 -10.44714 -10.43681 -10.42419 -10.28295 -9.58538 -9.40483 -8.49407 -8.31888 -8.06196 -6.48274 -3.90063 0.33246 0.93533 2.40179 2.43956 2.68280 3.14525 3.24390 3.30450 3.69442 3.74149 3.76254 4.08755 4.30210 4.42779 4.72629 4.93452 5.02993 5.14084 5.15370 5.16301 5.21006 5.41818 5.51074 5.56270 5.57199 5.68743 5.84376 5.98593 6.05328 6.41935 6.55480 6.76199 7.19711 7.49577 7.68712 7.96048 8.09511 8.50760 9.09088 9.41274 9.91563 10.69104 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.025546 B = 0.003098 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.799740 B = 9035.599953 C =10105.636020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.699 5.699 3 C 0.564 3.436 4 N -0.556 5.556 5 C 0.219 3.781 6 C -0.104 4.104 7 C -0.231 4.231 8 C 0.201 3.799 9 C 0.518 3.482 10 O -0.493 6.493 11 O -0.297 6.297 12 C 0.056 3.944 13 C 0.440 3.560 14 O -0.571 6.571 15 N -0.554 5.554 16 C -0.301 4.301 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.898 5.898 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 N -0.518 5.518 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.415 0.585 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.395 0.605 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.970 -12.172 -0.083 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.336 5.336 3 C 0.207 3.793 4 N -0.280 5.280 5 C 0.069 3.931 6 C -0.162 4.162 7 C -0.257 4.257 8 C 0.053 3.947 9 C 0.359 3.641 10 O -0.380 6.380 11 O -0.209 6.209 12 C -0.021 4.021 13 C 0.224 3.776 14 O -0.454 6.454 15 N -0.191 5.191 16 C -0.430 4.430 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.539 5.539 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 N -0.244 5.244 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.251 0.749 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.903 -13.245 -0.087 21.475 hybrid contribution -0.168 1.172 0.000 1.184 sum 16.735 -12.074 -0.087 20.636 Atomic orbital electron populations 1.21616 0.77018 1.02100 1.03525 1.43909 1.06974 1.03461 1.79237 1.19212 0.84638 0.86711 0.88743 1.67630 1.06839 1.32158 1.21351 1.21450 0.97218 0.86653 0.87817 1.20801 0.87043 1.04349 1.03965 1.22371 0.93772 1.01139 1.08425 1.20124 0.90288 0.89913 0.94348 1.20767 0.82102 0.87691 0.73502 1.90840 1.71059 1.30762 1.45381 1.86728 1.17832 1.34692 1.81656 1.22891 0.92981 0.82542 1.03723 1.19262 0.85933 0.86389 0.85984 1.90578 1.77379 1.22601 1.54845 1.41689 1.06246 1.07127 1.64065 1.19723 0.80081 0.95133 1.48077 0.87617 1.25306 1.00972 0.94542 0.96965 1.69613 1.36408 0.98026 1.49825 0.85803 0.81569 0.78121 0.78487 1.20281 1.20830 1.19281 1.67957 1.40159 0.97045 1.19218 0.91593 0.90540 0.91575 0.74867 0.89338 0.89620 0.89759 0.82318 0.89238 0.89243 0.77168 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.67 59.85 0.64 1.70 16 2 N -0.70 -7.58 5.86 -69.14 -0.41 -7.99 16 3 C 0.56 7.76 8.42 -322.95 -2.72 5.04 16 4 N -0.56 -6.83 10.38 -10.16 -0.11 -6.94 16 5 C 0.22 2.33 6.83 -82.25 -0.56 1.77 16 6 C -0.10 -0.64 10.21 36.01 0.37 -0.27 16 7 C -0.23 -2.77 9.40 -38.90 -0.37 -3.14 16 8 C 0.20 3.11 6.79 -82.68 -0.56 2.55 16 9 C 0.52 9.00 7.97 34.91 0.28 9.27 16 10 O -0.49 -8.62 16.21 -19.18 -0.31 -8.93 16 11 O -0.30 -5.95 9.61 -47.00 -0.45 -6.40 16 12 C 0.06 1.09 5.95 36.01 0.21 1.31 16 13 C 0.44 10.75 7.86 -10.98 -0.09 10.67 16 14 O -0.57 -16.10 16.08 -14.11 -0.23 -16.33 16 15 N -0.55 -14.08 5.29 -10.96 -0.06 -14.14 16 16 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 17 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 20 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 N -0.52 -8.35 9.39 -10.51 -0.10 -8.45 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.41 3.37 8.94 -40.82 -0.37 3.00 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.16 1.59 7.73 -52.49 -0.41 1.19 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -34.13 331.13 -7.98 -42.11 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -3.98 Total: 8.79 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: -3.04 Total: 20.95 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.06 Total: -60.96 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.99 Total: -31.66 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.13 -7.98 -42.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805621316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.973 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds