Wall clock time and date at job start Tue Mar 31 2020 03:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47683 * 2 1 4 4 C 1.50701 * 109.46958 * 240.00162 * 2 1 3 5 5 H 1.07997 * 119.99904 * 267.41072 * 4 2 1 6 6 C 1.37881 * 120.00304 * 87.40974 * 4 2 1 7 7 N 1.31517 * 119.99331 * 353.69899 * 6 4 2 8 8 Si 1.86799 * 119.99985 * 173.69459 * 6 4 2 9 9 H 1.48492 * 109.47502 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.46713 * 120.00497 * 8 6 4 11 11 H 1.48502 * 109.46694 * 239.99904 * 8 6 4 12 12 N 1.46499 * 109.46974 * 120.00335 * 2 1 3 13 13 C 1.46502 * 119.99917 * 59.99738 * 12 2 1 14 14 S 1.65597 * 120.00190 * 239.99700 * 12 2 1 15 15 O 1.42095 * 106.40267 * 203.54185 * 14 12 2 16 16 O 1.42109 * 106.39934 * 336.46101 * 14 12 2 17 17 N 1.65594 * 107.21823 * 89.99645 * 14 12 2 18 18 C 1.46926 * 120.63682 * 269.72346 * 17 14 12 19 19 C 1.53618 * 108.54507 * 126.36594 * 18 17 14 20 20 C 1.53040 * 109.24147 * 54.86047 * 19 18 17 21 21 F 1.39900 * 109.46243 * 178.49027 * 20 19 18 22 22 C 1.53042 * 109.54053 * 298.50954 * 20 19 18 23 23 C 1.46932 * 120.62819 * 90.00146 * 17 14 12 24 24 H 1.09001 * 109.46629 * 53.97056 * 1 2 3 25 25 H 1.08998 * 109.47398 * 173.96852 * 1 2 3 26 26 H 1.08999 * 109.47181 * 293.97575 * 1 2 3 27 27 H 0.96998 * 120.00509 * 1.76009 * 7 6 4 28 28 H 1.09000 * 109.47331 * 90.00104 * 13 12 2 29 29 H 1.08997 * 109.47234 * 209.99789 * 13 12 2 30 30 H 1.08994 * 109.47301 * 329.99981 * 13 12 2 31 31 H 1.09001 * 109.58581 * 246.20682 * 18 17 14 32 32 H 1.09006 * 109.58215 * 6.62417 * 18 17 14 33 33 H 1.08998 * 109.63881 * 294.86645 * 19 18 17 34 34 H 1.09007 * 109.43615 * 174.72740 * 19 18 17 35 35 H 1.08999 * 109.45019 * 58.52104 * 20 19 18 36 36 H 1.08996 * 109.49502 * 301.41707 * 22 20 19 37 37 H 1.08992 * 109.52702 * 181.33017 * 22 20 19 38 38 H 1.08996 * 109.58383 * 353.37656 * 23 17 14 39 39 H 1.09001 * 109.58513 * 113.65351 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2521 -1.7671 -1.1921 6 6 2.2112 -0.0114 -2.4054 7 7 1.8279 1.2440 -2.4885 8 14 2.9982 -0.8473 -3.8790 9 1 3.3380 -2.2499 -3.5294 10 1 2.0475 -0.8372 -5.0197 11 1 4.2351 -0.1187 -4.2591 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0933 1.4279 14 16 2.9704 0.1140 2.2862 15 8 3.7118 -0.8792 2.9813 16 8 3.5795 1.1828 1.5748 17 7 1.9608 0.8089 3.3997 18 6 1.4423 2.1682 3.1947 19 6 -0.0894 2.1288 3.3058 20 6 -0.4819 1.5024 4.6458 21 9 -1.8757 1.4956 4.7667 22 6 0.0425 0.0661 4.7126 23 6 1.5712 0.0800 4.6146 24 1 -0.3632 0.6045 -0.8311 25 1 -0.3634 -1.0219 -0.1080 26 1 -0.3633 0.4176 0.9390 27 1 1.4427 1.6857 -1.7156 28 1 2.4156 -2.7378 0.9715 29 1 1.6237 -2.2854 2.5000 30 1 0.6903 -2.3002 0.9846 31 1 1.8497 2.8334 3.9561 32 1 1.7293 2.5233 2.2049 33 1 -0.5005 1.5327 2.4911 34 1 -0.4834 3.1437 3.2494 35 1 -0.0497 2.0849 5.4593 36 1 -0.3698 -0.5105 3.8846 37 1 -0.2574 -0.3877 5.6570 38 1 1.9433 -0.9431 4.5620 39 1 1.9910 0.5769 5.4892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882607342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:21 Heat of formation + Delta-G solvation = -156.857219 kcal Electronic energy + Delta-G solvation = -23954.625678 eV Core-core repulsion = 20358.081040 eV Total energy + Delta-G solvation = -3596.544638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.59634 -39.17353 -38.50397 -38.07683 -36.96495 -34.66053 -32.82133 -32.24851 -30.95767 -27.28179 -26.79216 -25.19929 -24.55434 -22.84840 -21.61798 -20.06473 -19.31277 -18.66147 -18.53945 -17.21717 -17.11653 -16.18639 -16.11624 -15.99933 -15.65048 -15.56411 -15.34519 -15.18161 -14.76464 -14.05148 -13.82771 -13.74881 -13.62216 -13.54444 -13.38710 -13.23767 -13.09970 -13.01911 -12.84983 -12.60955 -12.52755 -12.27466 -12.22855 -12.03263 -11.93414 -11.40195 -11.38848 -10.87524 -10.56568 -10.20263 -9.62468 -8.61408 -6.33182 -0.46143 1.52818 1.61347 1.76774 1.91580 2.46697 2.56690 3.19016 3.25874 3.48571 3.53299 3.59557 3.92216 3.97501 3.99970 4.13446 4.25386 4.45966 4.56449 4.61432 4.64208 4.67704 4.71674 4.77323 4.80758 4.88789 4.90461 5.03073 5.07794 5.10461 5.26093 5.33691 5.49128 5.56863 5.88687 6.06367 6.27975 6.61514 7.44239 8.77285 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.005964 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.558523 B = 4693.892304 C = 5159.668438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.255 3.745 3 H 0.029 0.971 4 C -0.608 4.608 5 H 0.053 0.947 6 C -0.027 4.027 7 N -0.930 5.930 8 Si 1.112 2.888 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.994 5.994 13 C 0.104 3.896 14 S 2.786 3.214 15 O -1.005 7.005 16 O -1.015 7.015 17 N -1.005 6.005 18 C 0.122 3.878 19 C -0.161 4.161 20 C 0.096 3.904 21 F -0.227 7.227 22 C -0.156 4.156 23 C 0.119 3.881 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.261 0.739 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 -1.227 16.544 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.151 3.849 3 H 0.047 0.953 4 C -0.648 4.648 5 H 0.072 0.928 6 C -0.227 4.227 7 N -0.568 5.568 8 Si 0.935 3.065 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.212 1.212 12 N -0.835 5.835 13 C -0.041 4.041 14 S 2.797 3.203 15 O -0.988 6.988 16 O -0.999 6.999 17 N -0.847 5.847 18 C -0.003 4.003 19 C -0.200 4.200 20 C 0.060 3.940 21 F -0.208 7.208 22 C -0.195 4.195 23 C -0.005 4.005 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.966 -0.958 14.996 15.541 hybrid contribution -0.843 -0.106 1.097 1.387 sum -4.808 -1.064 16.093 16.830 Atomic orbital electron populations 1.22020 0.96870 1.00884 0.99276 1.18583 0.91878 0.91850 0.82620 0.95295 1.22507 1.47961 0.97349 0.97006 0.92847 1.27101 0.95336 0.96027 1.04248 1.70859 1.40270 1.12794 1.32830 0.82991 0.76012 0.74749 0.72747 1.19757 1.20103 1.21226 1.57746 1.69964 1.20941 1.34893 1.21316 1.01413 0.80486 1.00892 1.01614 0.74034 0.72363 0.72289 1.93501 1.69894 1.60779 1.74666 1.93544 1.75419 1.57369 1.73582 1.58194 1.66945 1.24983 1.34564 1.21544 0.93335 0.82160 1.03248 1.22624 0.95974 1.03442 0.97945 1.21610 0.75040 0.98336 0.99051 1.92793 1.32883 1.97819 1.97328 1.22502 0.95678 0.96327 1.04984 1.21608 0.94552 0.97641 0.86708 0.94607 0.92844 0.93082 0.92846 0.94327 0.90097 0.90476 0.87836 0.91017 0.91667 0.88217 0.87098 0.91290 0.87169 0.88879 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.97 71.98 0.65 -4.75 16 2 C 0.26 12.16 2.26 44.25 0.10 12.26 16 3 H 0.03 1.57 5.66 -2.39 -0.01 1.55 16 4 C -0.61 -33.03 8.28 25.60 0.21 -32.82 16 5 H 0.05 2.88 7.36 -2.91 -0.02 2.85 16 6 C -0.03 -1.53 5.45 84.66 0.46 -1.07 16 7 N -0.93 -55.66 13.62 21.45 0.29 -55.37 16 8 Si 1.11 50.53 29.91 68.60 2.05 52.58 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 N -0.99 -40.07 3.12 -520.46 -1.62 -41.69 16 13 C 0.10 3.50 9.37 127.77 1.20 4.70 16 14 S 2.79 107.33 6.06 -56.49 -0.34 106.98 16 15 O -1.00 -40.09 15.93 -128.00 -2.04 -42.13 16 16 O -1.02 -48.43 15.41 -128.00 -1.97 -50.40 16 17 N -1.01 -27.15 3.34 -512.28 -1.71 -28.86 16 18 C 0.12 2.96 6.41 86.51 0.55 3.51 16 19 C -0.16 -3.38 5.83 30.82 0.18 -3.20 16 20 C 0.10 1.68 3.83 30.62 0.12 1.80 16 21 F -0.23 -5.06 17.08 44.97 0.77 -4.29 16 22 C -0.16 -2.59 5.82 30.67 0.18 -2.41 16 23 C 0.12 2.28 6.37 86.36 0.55 2.83 16 24 H 0.03 1.60 7.76 -2.39 -0.02 1.58 16 25 H 0.05 2.09 6.92 -2.39 -0.02 2.07 16 26 H 0.05 1.77 6.32 -2.39 -0.02 1.76 16 27 H 0.26 15.58 6.35 -92.71 -0.59 15.00 16 28 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 29 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 30 H 0.08 2.43 6.55 -2.39 -0.02 2.42 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 2.16 7.12 -2.38 -0.02 2.15 16 33 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 34 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.84 7.13 -2.39 -0.02 1.82 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -72.18 320.61 0.85 -71.33 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.23 Total: 11.01 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.20 Total: -19.16 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -3.04 Total: -125.92 kcal Atomic # 8 Polarization: -88.52 SS G_CDS: -4.01 Total: -92.53 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.29 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Atomic # 16 Polarization: 107.33 SS G_CDS: -0.34 Total: 106.98 kcal Total: -72.18 0.85 -71.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882607342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.528 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds