Wall clock time and date at job start Tue Mar 31 2020 02:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 117.00058 * 2 1 4 4 O 1.20822 * 119.99922 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99893 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46829 * 180.02562 * 5 3 2 7 7 C 1.36863 * 119.99734 * 263.01942 * 6 5 3 8 8 H 1.07996 * 120.00040 * 213.61588 * 7 6 5 9 9 C 1.39027 * 119.99430 * 33.62088 * 7 6 5 10 10 N 1.31375 * 120.00422 * 5.35132 * 9 7 6 11 11 Si 1.86810 * 119.99658 * 185.35149 * 9 7 6 12 12 H 1.48504 * 109.47027 * 59.99898 * 11 9 7 13 13 H 1.48495 * 109.47245 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46801 * 300.00191 * 11 9 7 15 15 C 1.34770 * 120.00106 * 83.02635 * 6 5 3 16 16 O 1.21730 * 120.00357 * 5.07578 * 15 6 5 17 17 C 1.46586 * 119.99802 * 185.07846 * 15 6 5 18 18 C 1.36471 * 126.65394 * 175.40631 * 17 15 6 19 19 N 1.33670 * 107.44589 * 179.97438 * 18 17 15 20 20 C 1.30629 * 109.00554 * 0.02562 * 19 18 17 21 21 C 1.50697 * 125.41352 * 179.97438 * 20 19 18 22 22 C 1.52998 * 117.49955 * 351.28065 * 21 20 19 23 23 C 1.53006 * 117.49919 * 59.93824 * 21 20 19 24 24 O 1.33699 * 109.17433 * 0.24156 * 20 19 18 25 25 H 1.08999 * 109.47009 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47534 * 300.00562 * 1 2 3 27 27 H 1.09002 * 109.46736 * 60.00183 * 1 2 3 28 28 H 1.08996 * 109.47368 * 60.00400 * 5 3 2 29 29 H 1.09001 * 109.47254 * 299.99506 * 5 3 2 30 30 H 0.97006 * 120.00112 * 180.02562 * 10 9 7 31 31 H 1.07999 * 126.27276 * 359.97438 * 18 17 15 32 32 H 1.08998 * 115.55464 * 205.60990 * 21 20 19 33 33 H 1.09004 * 117.50037 * 215.00346 * 22 21 20 34 34 H 1.09008 * 117.49996 * 0.02562 * 22 21 20 35 35 H 1.09004 * 117.49591 * 359.97438 * 23 21 20 36 36 H 1.08996 * 117.49859 * 144.97147 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.3142 3.2954 -1.1752 8 1 5.0840 4.0527 -1.1894 9 6 3.6610 2.9457 -2.3515 10 7 2.6541 2.1025 -2.3182 11 14 4.2150 3.6751 -3.9797 12 1 5.6308 3.3048 -4.2318 13 1 3.3621 3.1468 -5.0745 14 1 4.0920 5.1542 -3.9268 15 6 4.0364 3.3658 1.1598 16 8 3.8307 2.7954 2.2153 17 6 4.3435 4.7991 1.1490 18 6 4.3479 5.6395 2.2242 19 7 4.6797 6.8560 1.7807 20 6 4.8770 6.7993 0.4907 21 6 5.2669 7.9621 -0.3850 22 6 5.2492 9.3569 0.2434 23 6 6.5834 8.6746 -0.0685 24 8 4.6723 5.5469 0.0698 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.9564 0.7806 -0.8891 29 1 3.9557 0.7809 0.8909 30 1 2.1986 1.8583 -3.1391 31 1 4.1242 5.3708 3.2461 32 1 4.9792 7.8787 -1.4331 33 1 4.9497 10.1911 -0.3911 34 1 4.9559 9.4336 1.2905 35 1 7.1673 8.3025 0.7734 36 1 7.1620 9.0594 -0.9083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889077021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:35 Heat of formation + Delta-G solvation = -50.208855 kcal Electronic energy + Delta-G solvation = -24187.855996 eV Core-core repulsion = 20448.119238 eV Total energy + Delta-G solvation = -3739.736759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.66135 -39.49396 -38.24553 -37.10694 -35.56552 -34.77367 -33.94943 -31.77969 -29.94378 -28.37844 -26.37212 -25.21249 -24.01902 -22.56458 -22.23417 -20.45269 -20.22812 -19.53997 -18.19788 -16.71130 -16.69220 -16.17143 -16.02335 -15.54881 -15.27014 -14.83285 -14.56777 -14.45178 -14.21315 -13.51489 -13.23921 -12.63771 -12.55201 -12.38087 -12.13780 -11.72341 -11.55962 -11.35864 -11.30943 -11.05239 -10.96893 -10.81234 -10.61825 -10.56251 -10.52678 -10.15185 -9.84219 -9.54163 -9.17907 -9.10568 -8.21388 -7.92615 -6.66010 -4.28053 1.59057 2.90346 3.02512 3.08898 3.09522 3.12835 3.52578 3.65548 3.92245 3.96531 4.17738 4.29623 4.60305 4.82353 4.87931 4.96924 5.04673 5.60570 5.62708 5.66821 5.74864 5.77994 5.81338 5.91022 6.04345 6.09727 6.15593 6.24567 6.31912 6.43074 6.46257 6.82850 7.26306 7.35283 7.49510 8.09155 8.22552 8.78342 9.02801 9.12467 9.48693 10.40563 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.006004 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.446754 B = 4662.067879 C = 5857.093073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.491 6.491 5 C 0.157 3.843 6 N -0.406 5.406 7 C -0.334 4.334 8 H 0.111 0.889 9 C 0.047 3.953 10 N -0.859 5.859 11 Si 0.933 3.067 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.542 3.458 16 O -0.582 6.582 17 C -0.037 4.037 18 C 0.000 4.000 19 N -0.489 5.489 20 C 0.197 3.803 21 C -0.074 4.074 22 C -0.150 4.150 23 C -0.158 4.158 24 O -0.152 6.152 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.277 0.723 31 H 0.187 0.813 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 4.202 -0.533 5.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.325 3.675 4 O -0.375 6.375 5 C 0.032 3.968 6 N -0.123 5.123 7 C -0.462 4.462 8 H 0.128 0.872 9 C -0.160 4.160 10 N -0.495 5.495 11 Si 0.758 3.242 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.331 3.669 16 O -0.469 6.469 17 C -0.094 4.094 18 C -0.144 4.144 19 N -0.219 5.219 20 C -0.008 4.008 21 C -0.093 4.093 22 C -0.187 4.187 23 C -0.195 4.195 24 O -0.036 6.036 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.204 0.796 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.833 4.622 0.068 5.422 hybrid contribution -0.419 -0.309 -1.461 1.551 sum 2.414 4.313 -1.393 5.135 Atomic orbital electron populations 1.22927 0.78533 1.01800 1.01700 1.86432 1.21788 1.35332 1.85879 1.23617 0.91999 0.80733 0.71149 1.90529 1.66273 1.36268 1.44413 1.20454 0.87792 0.84742 1.03788 1.43182 1.54861 1.07943 1.06297 1.19823 1.20067 1.22469 0.83809 0.87220 1.25506 0.93735 0.96157 1.00623 1.69603 1.18580 1.31834 1.29485 0.85888 0.78705 0.79678 0.79885 1.19370 1.20663 1.19393 1.16652 0.83001 0.82412 0.84785 1.90732 1.57576 1.67434 1.31147 1.23359 1.07067 0.94270 0.84674 1.23278 1.03580 0.87264 1.00229 1.70130 1.18278 1.24481 1.08972 1.25104 1.00544 0.85174 0.89952 1.19984 1.03944 0.87588 0.97753 1.23058 0.99988 0.92699 1.02969 1.23095 0.90278 1.02375 1.03801 1.84898 1.64136 1.18700 1.35899 0.89579 0.93113 0.92607 0.86281 0.89368 0.91228 0.79587 0.85083 0.87870 0.87217 0.88126 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -7.95 10.56 -39.25 -0.41 -8.36 16 3 C 0.48 11.83 5.99 36.01 0.22 12.05 16 4 O -0.49 -13.62 15.06 -18.75 -0.28 -13.90 16 5 C 0.16 3.68 5.17 -5.19 -0.03 3.65 16 6 N -0.41 -10.33 2.15 -117.61 -0.25 -10.58 16 7 C -0.33 -8.43 8.22 -15.01 -0.12 -8.55 16 8 H 0.11 2.71 5.69 -52.49 -0.30 2.41 16 9 C 0.05 1.16 5.16 -17.45 -0.09 1.07 16 10 N -0.86 -21.90 8.70 55.50 0.48 -21.42 16 11 Si 0.93 19.13 29.56 -169.99 -5.02 14.11 16 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 13 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 C 0.54 13.86 7.33 -12.90 -0.09 13.76 16 16 O -0.58 -15.44 16.56 5.16 0.09 -15.35 16 17 C -0.04 -0.87 6.84 -36.85 -0.25 -1.13 16 18 C 0.00 0.01 11.67 -17.39 -0.20 -0.20 16 19 N -0.49 -9.62 10.79 -10.77 -0.12 -9.74 16 20 C 0.20 3.77 7.86 -12.79 -0.10 3.67 16 21 C -0.07 -1.05 6.33 -91.77 -0.58 -1.63 16 22 C -0.15 -1.71 10.13 -26.70 -0.27 -1.98 16 23 C -0.16 -1.77 10.24 -26.69 -0.27 -2.04 16 24 O -0.15 -3.40 7.67 4.31 0.03 -3.37 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 28 H 0.12 2.68 7.08 -51.93 -0.37 2.32 16 29 H 0.09 1.89 7.57 -51.93 -0.39 1.50 16 30 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.19 3.51 8.06 -52.49 -0.42 3.09 16 32 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.37 7.87 -51.92 -0.41 0.96 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -31.79 319.42 -5.39 -37.18 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.98 Total: 6.10 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: -0.73 Total: 20.51 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.11 Total: -41.73 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.58 Total: -40.99 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.79 -5.39 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889077021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.028 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds