Wall clock time and date at job start Tue Mar 31 2020 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47335 * 219.58516 * 3 2 1 5 5 N 1.46500 * 109.47546 * 180.02562 * 4 3 2 6 6 C 1.46497 * 119.99813 * 270.00402 * 5 4 3 7 7 C 1.50705 * 109.46718 * 269.99681 * 6 5 4 8 8 H 1.07991 * 120.00042 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99716 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00163 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99870 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47214 * 89.99936 * 11 9 7 13 13 H 1.48500 * 109.46947 * 209.99618 * 11 9 7 14 14 H 1.48501 * 109.47054 * 329.99680 * 11 9 7 15 15 C 1.34776 * 119.99907 * 89.99593 * 5 4 3 16 16 O 1.21284 * 119.99700 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00039 * 0.02562 * 15 5 4 18 18 O 1.45199 * 109.46937 * 179.97438 * 17 15 5 19 19 C 1.34234 * 116.99947 * 179.97438 * 18 17 15 20 20 O 1.20822 * 120.00090 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99997 * 179.72219 * 19 18 17 22 22 C 1.52992 * 109.47263 * 179.97438 * 21 19 18 23 23 C 1.53003 * 117.50275 * 243.62477 * 22 21 19 24 24 C 1.53000 * 60.00006 * 252.50775 * 23 22 21 25 25 H 1.09003 * 109.47091 * 99.58429 * 3 2 1 26 26 H 1.09003 * 109.47528 * 339.58715 * 3 2 1 27 27 H 1.09003 * 109.47102 * 59.99920 * 4 3 2 28 28 H 1.09003 * 109.46975 * 300.00537 * 4 3 2 29 29 H 1.09006 * 109.47438 * 29.99595 * 6 5 4 30 30 H 1.09004 * 109.47208 * 149.99651 * 6 5 4 31 31 H 0.97001 * 119.99742 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.47315 * 59.99933 * 17 15 5 33 33 H 1.09002 * 109.47266 * 299.99133 * 17 15 5 34 34 H 1.09001 * 109.47201 * 300.00712 * 21 19 18 35 35 H 1.09001 * 109.46880 * 60.00295 * 21 19 18 36 36 H 1.09004 * 115.55053 * 29.33450 * 22 21 19 37 37 H 1.09001 * 117.49408 * 359.97438 * 23 22 21 38 38 H 1.09002 * 117.50070 * 145.01756 * 23 22 21 39 39 H 1.08996 * 117.49654 * 252.50817 * 24 23 22 40 40 H 1.09006 * 117.49838 * 107.48475 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1126 0.9192 5 7 4.5825 1.1137 0.9187 6 6 5.3159 0.3055 1.8961 7 6 5.5668 1.1234 3.1368 8 1 5.2149 2.1428 3.1919 9 6 6.2458 0.5699 4.2016 10 7 6.6739 -0.6718 4.1347 11 14 6.5575 1.5838 5.7393 12 1 5.4283 1.4055 6.6871 13 1 7.8185 1.1339 6.3816 14 1 6.6734 3.0179 5.3715 15 6 5.2556 1.8580 0.0191 16 8 6.4684 1.8585 0.0184 17 6 4.5011 2.6896 -0.9861 18 8 5.4439 3.3940 -1.8365 19 6 4.9300 4.1841 -2.7922 20 8 3.7321 4.2842 -2.9139 21 6 5.8472 4.9517 -3.7092 22 6 5.0131 5.7672 -4.6991 23 6 5.1400 5.4203 -6.1838 24 6 5.7605 6.7104 -5.6439 25 1 2.9712 0.1719 -1.0133 26 1 2.9718 -0.9623 0.3584 27 1 2.7543 0.9413 1.9325 28 1 2.7537 2.0755 0.5608 29 1 4.7275 -0.5750 2.1542 30 1 6.2684 -0.0067 1.4679 31 1 7.1513 -1.0613 4.8840 32 1 3.8744 3.4118 -0.4629 33 1 3.8745 2.0404 -1.5977 34 1 6.4715 5.6232 -3.1197 35 1 6.4806 4.2539 -4.2568 36 1 4.0354 6.0870 -4.3384 37 1 5.8182 4.6113 -6.4554 38 1 4.2457 5.5115 -6.8003 39 1 5.2745 7.6503 -5.9051 40 1 6.8467 6.7498 -5.5602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914948430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:36 Heat of formation + Delta-G solvation = -71.328510 kcal Electronic energy + Delta-G solvation = -22875.634486 eV Core-core repulsion = 19270.815005 eV Total energy + Delta-G solvation = -3604.819481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67735 -39.23965 -37.70530 -36.90500 -36.24364 -35.28396 -32.96136 -30.92864 -30.59428 -28.93434 -26.66906 -24.11087 -23.06687 -22.69198 -21.95950 -20.28807 -18.89281 -17.94403 -17.71604 -16.93786 -16.67885 -16.48441 -16.21916 -15.64930 -15.00918 -14.77897 -14.71484 -14.39439 -14.11774 -13.80397 -13.45932 -13.00725 -12.74978 -12.57142 -12.48810 -12.22866 -12.10763 -11.83586 -11.79703 -11.77283 -11.34245 -11.06733 -10.99221 -10.75483 -10.71253 -10.64691 -10.58887 -10.29818 -10.23669 -9.77246 -9.15565 -8.51597 -7.97808 -6.13430 -4.18409 2.11713 2.36368 2.70398 2.79804 3.10244 3.26436 3.33858 3.37652 3.45537 3.61659 4.10389 4.32944 4.37766 4.51700 4.59997 4.75514 4.79358 4.90914 5.00140 5.09941 5.15030 5.17795 5.22498 5.25427 5.32534 5.33830 5.42416 5.57779 5.75076 5.79573 5.94060 5.99804 6.32581 6.81970 7.24992 7.32861 7.55595 7.65919 7.82372 8.08137 8.11419 8.70360 8.87767 9.47368 10.94758 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.003674 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.972767 B = 7618.844279 C = 9221.997514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.509 3.491 16 O -0.509 6.509 17 C 0.046 3.954 18 O -0.330 6.330 19 C 0.463 3.537 20 O -0.511 6.511 21 C -0.083 4.083 22 C -0.149 4.149 23 C -0.178 4.178 24 C -0.176 4.176 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 8.548 -16.234 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.128 3.872 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.293 3.707 16 O -0.384 6.384 17 C -0.031 4.031 18 O -0.245 6.245 19 C 0.306 3.694 20 O -0.399 6.399 21 C -0.120 4.120 22 C -0.167 4.167 23 C -0.215 4.215 24 C -0.213 4.213 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.516 8.397 -16.119 18.727 hybrid contribution 0.366 0.409 0.987 1.129 sum -4.150 8.806 -15.132 17.993 Atomic orbital electron populations 1.81211 1.13012 1.08818 1.08906 1.29036 0.95048 0.93102 0.93023 1.19888 0.81531 1.04270 1.03548 1.21399 0.81932 0.96856 1.01188 1.48161 1.04999 1.46248 1.33126 1.19422 0.92672 0.89690 0.85428 1.21407 1.36931 0.99383 0.99335 0.92270 1.24915 0.95182 0.95049 0.98772 1.69918 1.38102 1.13150 1.31977 0.86495 0.77734 0.80511 0.82695 1.20622 1.21063 1.19838 1.19755 0.88185 0.80929 0.81784 1.90741 1.13290 1.63163 1.71177 1.22975 0.91290 0.96412 0.92470 1.86574 1.40070 1.55433 1.42377 1.23689 0.88839 0.77342 0.79487 1.90652 1.16942 1.62364 1.69933 1.20917 0.96944 0.98575 0.95581 1.22111 1.01325 1.02406 0.90901 1.23083 1.03230 0.99200 0.95974 1.23016 1.00128 0.94612 1.03523 0.87664 0.86209 0.88191 0.90636 0.94312 0.93332 0.92587 0.88512 0.88725 0.86938 0.87344 0.86231 0.88534 0.88611 0.88492 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.59 18.54 42.15 0.78 -5.81 16 2 C 0.22 2.63 15.43 -20.76 -0.32 2.31 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 4 C 0.11 1.46 5.17 -4.04 -0.02 1.44 16 5 N -0.59 -10.58 2.46 -175.05 -0.43 -11.01 16 6 C 0.25 5.67 5.16 -5.19 -0.03 5.65 16 7 C -0.53 -13.94 9.39 -34.44 -0.32 -14.26 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 11 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.51 9.40 7.75 -10.99 -0.09 9.32 16 16 O -0.51 -11.90 16.08 -14.11 -0.23 -12.12 16 17 C 0.05 0.65 4.50 36.00 0.16 0.81 16 18 O -0.33 -4.91 9.76 -45.92 -0.45 -5.36 16 19 C 0.46 5.86 7.96 36.01 0.29 6.14 16 20 O -0.51 -7.38 15.31 -18.75 -0.29 -7.67 16 21 C -0.08 -0.74 6.09 -27.89 -0.17 -0.91 16 22 C -0.15 -1.26 5.42 -90.62 -0.49 -1.75 16 23 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 24 C -0.18 -1.16 10.25 -26.73 -0.27 -1.43 16 25 H 0.11 0.89 7.22 -51.93 -0.38 0.51 16 26 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 29 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.10 1.24 7.39 -51.93 -0.38 0.86 16 33 H 0.09 1.09 7.18 -51.93 -0.37 0.72 16 34 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 0.80 7.87 -51.93 -0.41 0.40 16 36 H 0.12 1.18 7.30 -51.93 -0.38 0.80 16 37 H 0.10 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -33.81 356.90 -6.88 -40.69 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.55 Total: -2.36 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.81 Total: 6.67 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 1.09 Total: -41.16 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.96 Total: -25.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.81 -6.88 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914948430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.642 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds