Wall clock time and date at job start Tue Mar 31 2020 03:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48498 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46995 * 300.00319 * 3 2 1 6 6 H 1.48499 * 109.47506 * 59.99933 * 3 2 1 7 7 C 1.38812 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99721 * 170.56488 * 7 2 1 9 9 N 1.36934 * 120.00058 * 350.56784 * 7 2 1 10 10 C 1.48136 * 127.84033 * 164.34013 * 9 7 2 11 11 C 1.57695 * 104.67697 * 139.77106 * 10 9 7 12 12 H 1.09000 * 120.32123 * 244.63301 * 11 10 9 13 13 C 1.52999 * 116.11001 * 87.30643 * 11 10 9 14 14 H 1.08997 * 117.40642 * 16.95871 * 13 11 10 15 15 C 1.52998 * 117.44269 * 161.63806 * 13 11 10 16 16 N 1.46498 * 109.47302 * 244.24373 * 15 13 11 17 17 C 1.34777 * 120.00397 * 180.02562 * 16 15 13 18 18 O 1.21582 * 119.99557 * 359.72029 * 17 16 15 19 19 C 1.47613 * 120.00318 * 179.97438 * 17 16 15 20 20 N 1.31867 * 126.45966 * 359.68646 * 19 17 16 21 21 N 1.28472 * 110.15532 * 179.81945 * 20 19 17 22 22 H 0.96997 * 124.93465 * 180.18621 * 21 20 19 23 23 C 1.35729 * 110.13236 * 0.45882 * 21 20 19 24 24 C 1.35538 * 107.11528 * 359.72184 * 23 21 20 25 25 F 1.35109 * 127.24273 * 180.02562 * 24 23 21 26 26 C 1.52999 * 60.55811 * 269.28919 * 13 11 10 27 27 H 1.08997 * 119.54023 * 248.23591 * 26 13 11 28 28 C 1.48151 * 127.83567 * 344.33289 * 9 7 2 29 29 H 0.97002 * 120.00522 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.40874 * 259.19784 * 10 9 7 31 31 H 1.09006 * 110.40869 * 21.50327 * 10 9 7 32 32 H 1.08996 * 109.47596 * 124.24027 * 15 13 11 33 33 H 1.09002 * 109.47209 * 4.23985 * 15 13 11 34 34 H 0.97007 * 119.99969 * 359.97438 * 16 15 13 35 35 H 1.07995 * 126.44207 * 179.76238 * 23 21 20 36 36 H 1.09002 * 110.40398 * 100.80473 * 28 9 7 37 37 H 1.08999 * 110.40949 * 338.37135 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0794 -1.2083 -0.1539 9 7 1.3396 -2.3801 0.1933 10 6 1.8186 -3.7546 -0.0822 11 6 1.2963 -4.6111 1.1345 12 1 2.0016 -5.0741 1.8246 13 6 -0.1128 -5.1906 0.9943 14 1 -0.5436 -5.2255 -0.0062 15 6 -0.4929 -6.3509 1.9164 16 7 -0.7423 -7.5509 1.1139 17 6 -1.0948 -8.7036 1.7168 18 8 -1.2010 -8.7488 2.9271 19 6 -1.3466 -9.9126 0.9082 20 7 -1.2700 -10.0070 -0.4049 21 7 -1.5482 -11.2040 -0.7795 22 1 -1.5536 -11.5109 -1.6997 23 6 -1.8394 -11.9753 0.2987 24 6 -1.7220 -11.1879 1.3957 25 9 -1.9208 -11.5449 2.6835 26 6 0.0738 -3.8134 1.6342 27 1 -0.1316 -3.6822 2.6966 28 6 -0.0298 -2.5691 0.7262 29 1 -0.4851 0.8400 0.0004 30 1 1.4045 -4.1202 -1.0218 31 1 2.9080 -3.7784 -0.1131 32 1 -1.3936 -6.0925 2.4732 33 1 0.3226 -6.5431 2.6136 34 1 -0.6543 -7.5157 0.1485 35 1 -2.1125 -13.0200 0.2852 36 1 -0.7326 -2.7496 -0.0872 37 1 -0.3350 -1.6989 1.3073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978675861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:36 Heat of formation + Delta-G solvation = 33.571886 kcal Electronic energy + Delta-G solvation = -22360.151379 eV Core-core repulsion = 18668.713167 eV Total energy + Delta-G solvation = -3691.438212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.70304 -43.70968 -40.80085 -39.99637 -36.38650 -35.03991 -33.15400 -32.51666 -31.59777 -29.06448 -28.66276 -26.91573 -24.83321 -22.98688 -22.66418 -21.90463 -21.05638 -20.81460 -19.88364 -18.82006 -18.30544 -17.49617 -17.20243 -16.93955 -16.72653 -16.22570 -16.07805 -15.94694 -15.50463 -15.25539 -15.14767 -14.62382 -14.46823 -14.16270 -13.58972 -13.36597 -13.18033 -12.87475 -12.73447 -12.29995 -12.15617 -11.94806 -11.87516 -11.76198 -11.50221 -10.95178 -10.75386 -10.67973 -10.57238 -10.12761 -9.99228 -8.90312 -7.91734 -5.27771 0.27655 0.80698 1.46560 1.47634 1.58450 1.69130 2.02455 2.13176 2.47823 2.74768 3.03180 3.26460 3.53685 3.61503 3.71094 3.83443 3.86944 3.95788 4.19865 4.26934 4.32826 4.43345 4.58242 4.65921 4.72663 4.93080 5.02380 5.16407 5.18499 5.34297 5.39807 5.45750 5.53594 5.67239 5.91622 6.18268 6.34481 6.62687 7.01418 7.04645 7.68680 8.47265 9.22322 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.043303 B = 0.002519 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.449936 B =11113.715147 C =11398.643359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.149 3.851 11 C -0.158 4.158 12 H 0.130 0.870 13 C -0.115 4.115 14 H 0.109 0.891 15 C 0.162 3.838 16 N -0.698 5.698 17 C 0.596 3.404 18 O -0.569 6.569 19 C -0.058 4.058 20 N -0.236 5.236 21 N -0.342 5.342 22 H 0.478 0.522 23 C 0.008 3.992 24 C -0.009 4.009 25 F -0.120 7.120 26 C -0.176 4.176 27 H 0.113 0.887 28 C 0.189 3.811 29 H 0.250 0.750 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.418 0.582 35 H 0.249 0.751 36 H 0.003 0.997 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 -27.066 -3.149 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.344 5.344 10 C 0.024 3.976 11 C -0.178 4.178 12 H 0.148 0.852 13 C -0.134 4.134 14 H 0.127 0.873 15 C 0.039 3.961 16 N -0.349 5.349 17 C 0.381 3.619 18 O -0.447 6.447 19 C -0.218 4.218 20 N -0.075 5.075 21 N -0.062 5.062 22 H 0.330 0.670 23 C -0.138 4.138 24 C -0.039 4.039 25 F -0.099 7.099 26 C -0.196 4.196 27 H 0.131 0.869 28 C 0.063 3.937 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.265 0.735 36 H 0.021 0.979 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.569 -26.163 -3.210 26.600 hybrid contribution -0.027 0.666 0.191 0.693 sum -3.596 -25.497 -3.020 25.926 Atomic orbital electron populations 1.70101 1.06523 1.25666 1.57222 1.25746 0.96511 1.01307 1.02179 0.84998 0.78299 0.79172 0.76752 1.18881 1.21787 1.21815 1.19417 0.91403 0.83665 1.42348 0.90140 1.45467 1.14259 1.01228 1.73495 1.21876 0.97682 0.84156 0.93916 1.24664 0.90378 1.01691 1.01036 0.85194 1.22408 0.98537 0.92239 1.00204 0.87331 1.20784 1.01333 0.81668 0.92346 1.45723 1.68386 1.08892 1.11902 1.17052 0.76628 0.82140 0.86086 1.90822 1.54001 1.85078 1.14772 1.21935 1.13118 0.95620 0.91092 1.73602 1.17503 1.04598 1.11756 1.43250 1.46869 1.04719 1.11372 0.67019 1.23327 1.05364 1.00927 0.84176 1.17662 1.11973 0.93295 0.80977 1.91488 1.93416 1.91473 1.33474 1.23874 1.04678 0.91105 0.99951 0.86902 1.20813 0.86081 0.93673 0.93089 0.94133 0.95094 0.92608 0.90897 0.90872 0.74515 0.73508 0.97936 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.32 10.88 21.65 0.24 -57.08 16 2 C -0.06 -3.65 5.40 84.86 0.46 -3.19 16 3 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.24 -13.53 10.35 84.03 0.87 -12.66 16 8 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 9 N -0.62 -32.22 3.38 -681.43 -2.30 -34.53 16 10 C 0.15 6.09 7.09 87.73 0.62 6.71 16 11 C -0.16 -5.29 7.03 -8.69 -0.06 -5.35 16 12 H 0.13 3.84 8.12 -2.39 -0.02 3.82 16 13 C -0.11 -3.39 5.34 -10.79 -0.06 -3.44 16 14 H 0.11 3.17 8.04 -2.39 -0.02 3.15 16 15 C 0.16 4.30 5.95 86.38 0.51 4.81 16 16 N -0.70 -17.11 5.55 -466.20 -2.59 -19.70 16 17 C 0.60 16.89 7.82 86.72 0.68 17.56 16 18 O -0.57 -20.44 16.67 -3.97 -0.07 -20.50 16 19 C -0.06 -1.30 7.13 42.45 0.30 -1.00 16 20 N -0.24 -3.80 11.91 -48.15 -0.57 -4.37 16 21 N -0.34 -2.28 6.86 -57.00 -0.39 -2.67 16 22 H 0.48 -1.29 8.96 -219.99 -1.97 -3.26 16 23 C 0.01 0.06 12.06 83.47 1.01 1.07 16 24 C -0.01 -0.18 8.03 22.48 0.18 0.00 16 25 F -0.12 -2.99 17.03 44.97 0.77 -2.23 16 26 C -0.18 -6.58 6.77 -9.89 -0.07 -6.65 16 27 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 28 C 0.19 9.34 5.70 86.53 0.49 9.83 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.97 7.94 -2.39 -0.02 1.95 16 34 H 0.42 8.66 8.12 -92.70 -0.75 7.90 16 35 H 0.25 -0.75 8.06 -2.91 -0.02 -0.77 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.05 2.94 6.53 -2.39 -0.02 2.93 16 Total: -1.00 -79.30 324.48 0.45 -78.85 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -1.59 Total: 6.75 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 4.94 Total: 7.69 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -5.62 Total: -118.35 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.07 Total: -20.50 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.77 Total: -2.23 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.30 0.45 -78.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978675861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.423 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds