Wall clock time and date at job start Tue Mar 31 2020 03:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35656 * 116.99862 * 2 1 4 4 C 1.38633 * 120.13771 * 0.23863 * 3 2 1 5 5 C 1.38132 * 120.15855 * 180.29759 * 4 3 2 6 6 C 1.38418 * 120.42828 * 359.71596 * 5 4 3 7 7 C 1.38133 * 120.27352 * 0.02562 * 6 5 4 8 8 F 1.35106 * 120.08076 * 179.97438 * 7 6 5 9 9 C 1.39962 * 119.83620 * 359.97438 * 7 6 5 10 10 C 1.47388 * 120.21119 * 180.02562 * 9 7 6 11 11 O 1.21596 * 120.00226 * 90.00098 * 10 9 7 12 12 N 1.34779 * 119.99926 * 269.99748 * 10 9 7 13 13 C 1.46501 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53496 * 114.20904 * 155.00161 * 13 12 10 15 15 N 1.47062 * 87.98485 * 87.72044 * 14 13 12 16 16 C 1.36939 * 136.05593 * 207.08750 * 15 14 13 17 17 H 1.08008 * 119.99868 * 7.82597 * 16 15 14 18 18 C 1.38808 * 120.00203 * 187.82575 * 16 15 14 19 19 N 1.31618 * 119.99998 * 195.17052 * 18 16 15 20 20 Si 1.86797 * 119.99840 * 15.16580 * 18 16 15 21 21 H 1.48503 * 109.47450 * 270.00422 * 20 18 16 22 22 H 1.48503 * 109.47360 * 30.00092 * 20 18 16 23 23 H 1.48498 * 109.47360 * 150.00270 * 20 18 16 24 24 C 1.47059 * 87.88616 * 27.34176 * 15 14 13 25 25 H 1.08999 * 109.46982 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46891 * 299.99983 * 1 2 3 27 27 H 1.08994 * 109.47168 * 59.99628 * 1 2 3 28 28 H 1.08004 * 119.92466 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.79097 * 179.69428 * 5 4 3 30 30 H 1.08005 * 119.86163 * 180.02562 * 6 5 4 31 31 H 0.97003 * 119.99699 * 0.02562 * 12 10 9 32 32 H 1.09003 * 113.27537 * 21.93512 * 13 12 10 33 33 H 1.09008 * 113.46447 * 332.93478 * 14 13 12 34 34 H 1.09003 * 113.46673 * 202.50377 * 14 13 12 35 35 H 0.96995 * 120.00365 * 354.90363 * 19 18 16 36 36 H 1.08997 * 113.47135 * 87.43718 * 24 15 14 37 37 H 1.09007 * 113.47198 * 217.88025 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3732 0.0050 5 6 1.9192 3.6042 -0.0012 6 6 3.3009 3.6875 -0.0065 7 6 4.0678 2.5386 -0.0062 8 9 5.4161 2.6245 -0.0119 9 6 3.4446 1.2854 0.0000 10 6 4.2549 0.0543 0.0010 11 8 4.5930 -0.4503 1.0544 12 7 4.6211 -0.5124 -1.1658 13 6 5.4270 -1.7358 -1.1650 14 6 5.2742 -2.5911 -2.4304 15 7 6.3505 -1.7933 -3.0368 16 6 6.7165 -1.4349 -4.3068 17 1 6.0680 -1.6620 -5.1401 18 6 7.9210 -0.7797 -4.5232 19 7 8.1437 -0.1736 -5.6701 20 14 9.2257 -0.7582 -3.1866 21 1 9.0226 0.4273 -2.3155 22 1 9.1200 -1.9951 -2.3716 23 1 10.5718 -0.6896 -3.8098 24 6 6.8644 -1.5551 -1.6797 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2140 2.3178 0.0093 29 1 1.3273 4.5076 -0.0023 30 1 3.7813 4.6548 -0.0109 31 1 4.3516 -0.1097 -2.0061 32 1 5.3552 -2.2983 -0.2340 33 1 4.3105 -2.4668 -2.9245 34 1 5.5404 -3.6376 -2.2818 35 1 7.4985 -0.2467 -6.3906 36 1 7.5500 -2.3284 -1.3332 37 1 7.2558 -0.5481 -1.5341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030357365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:00 Heat of formation + Delta-G solvation = -20.048291 kcal Electronic energy + Delta-G solvation = -23720.804981 eV Core-core repulsion = 19994.748872 eV Total energy + Delta-G solvation = -3726.056109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.02599 -40.64457 -39.40997 -37.89860 -37.29755 -33.40189 -32.21843 -31.30217 -30.20492 -27.90995 -27.58827 -25.26119 -24.45856 -22.52262 -22.39790 -20.72284 -19.45046 -18.76155 -17.57528 -17.43403 -17.24561 -16.31828 -16.20550 -15.82326 -15.48297 -15.41067 -14.91724 -14.78777 -14.24929 -13.92448 -13.64803 -13.21175 -13.19410 -13.01619 -12.70934 -12.65906 -12.11537 -11.88432 -11.62114 -11.35736 -11.34808 -10.90108 -10.48753 -10.13756 -9.81622 -9.72326 -9.21488 -9.10057 -8.72546 -8.60937 -8.47218 -7.18221 -6.29074 -3.21935 0.71369 0.96579 2.71378 2.79016 3.15602 3.43359 3.48904 3.53430 3.66685 4.11022 4.40368 4.62357 4.62885 4.74436 4.77172 4.79150 4.83705 4.97285 5.00357 5.19185 5.20966 5.41296 5.56259 5.73688 5.76928 5.93030 5.95875 5.97507 6.23976 6.29286 6.37224 6.43050 6.48331 6.94823 7.02148 7.12952 7.83974 8.24407 8.44264 8.98095 9.51882 10.38209 11.20653 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.004982 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.289559 B = 5619.300341 C = 6156.858537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.191 3.809 4 C -0.225 4.225 5 C -0.036 4.036 6 C -0.194 4.194 7 C 0.176 3.824 8 F -0.119 7.119 9 C -0.194 4.194 10 C 0.576 3.424 11 O -0.535 6.535 12 N -0.680 5.680 13 C 0.099 3.901 14 C 0.110 3.890 15 N -0.624 5.624 16 C -0.306 4.306 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.931 5.931 20 Si 1.059 2.941 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.296 1.296 24 C 0.087 3.913 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.408 0.592 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 5.655 12.667 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.143 3.857 4 C -0.244 4.244 5 C -0.054 4.054 6 C -0.213 4.213 7 C 0.156 3.844 8 F -0.098 7.098 9 C -0.199 4.199 10 C 0.361 3.639 11 O -0.412 6.412 12 N -0.329 5.329 13 C -0.007 4.007 14 C -0.017 4.017 15 N -0.352 5.352 16 C -0.433 4.433 17 H 0.099 0.901 18 C -0.220 4.220 19 N -0.573 5.573 20 Si 0.891 3.109 21 H -0.220 1.220 22 H -0.208 1.208 23 H -0.223 1.223 24 C -0.040 4.040 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.976 5.729 13.527 21.703 hybrid contribution -1.498 -0.353 -0.957 1.813 sum -17.474 5.376 12.570 22.187 Atomic orbital electron populations 1.23178 0.77477 1.04613 1.01604 1.86121 1.22016 1.25964 1.87373 1.18550 0.89722 0.85076 0.92335 1.21214 1.00568 0.91739 1.10834 1.20866 0.93427 0.97496 0.93628 1.21009 0.94318 0.97628 1.08307 1.17320 0.77411 0.92225 0.97436 1.91605 1.28348 1.96855 1.92944 1.19137 0.91922 0.93837 1.15018 1.17608 0.78995 0.83008 0.84314 1.90770 1.55832 1.63346 1.31248 1.45446 1.52346 1.26904 1.08196 1.22476 0.92808 0.86149 0.99272 1.22736 0.93953 0.94597 0.90375 1.46365 1.30826 1.56862 1.01185 1.20120 1.04512 1.36692 0.81937 0.90069 1.25733 0.97521 0.96564 1.02179 1.70911 1.40435 1.41186 1.04787 0.83807 0.76266 0.76345 0.74489 1.22032 1.20778 1.22296 1.23204 0.94578 1.00032 0.86181 0.87734 0.92242 0.92117 0.84251 0.84264 0.83844 0.75683 0.87828 0.93237 0.93243 0.92919 0.92622 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.75 9.95 -18.67 -0.19 -3.94 16 3 C 0.19 2.42 6.70 -38.70 -0.26 2.16 16 4 C -0.22 -2.06 9.03 -39.47 -0.36 -2.42 16 5 C -0.04 -0.30 10.03 -39.55 -0.40 -0.70 16 6 C -0.19 -2.07 10.01 -39.55 -0.40 -2.47 16 7 C 0.18 2.58 7.29 -38.97 -0.28 2.29 16 8 F -0.12 -2.03 16.83 2.25 0.04 -1.99 16 9 C -0.19 -3.03 5.64 -104.80 -0.59 -3.62 16 10 C 0.58 10.74 6.43 -12.54 -0.08 10.66 16 11 O -0.53 -11.43 16.70 5.28 0.09 -11.35 16 12 N -0.68 -12.63 5.40 -54.58 -0.29 -12.92 16 13 C 0.10 1.90 4.61 -67.68 -0.31 1.59 16 14 C 0.11 2.18 8.44 -8.52 -0.07 2.10 16 15 N -0.62 -15.34 3.62 -184.65 -0.67 -16.01 16 16 C -0.31 -8.80 11.03 -15.06 -0.17 -8.96 16 17 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 18 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 19 N -0.93 -29.55 13.70 55.49 0.76 -28.79 16 20 Si 1.06 27.50 25.50 -169.99 -4.34 23.17 16 21 H -0.29 -7.48 6.97 56.52 0.39 -7.08 16 22 H -0.28 -6.80 5.66 56.52 0.32 -6.49 16 23 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 24 C 0.09 1.94 5.44 -8.39 -0.05 1.89 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 27 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 28 H 0.14 0.84 6.29 -52.48 -0.33 0.51 16 29 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.41 7.43 8.75 -40.82 -0.36 7.07 16 32 H 0.10 1.88 7.45 -51.93 -0.39 1.49 16 33 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 36 H 0.06 1.20 7.02 -51.93 -0.36 0.84 16 37 H 0.06 1.33 6.22 -51.93 -0.32 1.01 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -35.94 319.77 -6.18 -42.12 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.34 Total: 1.89 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.06 Total: 2.99 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.20 Total: -57.72 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.10 Total: -15.28 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 27.50 SS G_CDS: -4.34 Total: 23.17 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.94 -6.18 -42.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030357365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.068 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds