Wall clock time and date at job start Tue Mar 31 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47367 * 239.99882 * 3 2 1 5 5 H 1.48503 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47423 * 120.00058 * 3 2 1 7 7 C 1.38814 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00115 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.47714 * 134.42917 * 179.97438 * 9 7 2 11 11 C 1.53236 * 85.89364 * 155.90654 * 10 9 7 12 12 C 1.47713 * 134.43732 * 0.02973 * 9 7 2 13 13 C 1.53428 * 114.99077 * 139.52493 * 11 10 9 14 14 C 1.54999 * 103.85299 * 132.14120 * 13 11 10 15 15 H 1.08993 * 110.87233 * 262.74959 * 14 13 11 16 16 N 1.46500 * 110.87059 * 139.05948 * 14 13 11 17 17 C 1.34779 * 119.99637 * 155.00207 * 16 14 13 18 18 O 1.21496 * 120.00173 * 359.97438 * 17 16 14 19 19 C 1.48279 * 119.99905 * 180.02562 * 17 16 14 20 20 C 1.47482 * 128.71390 * 180.02562 * 19 17 16 21 21 N 1.30648 * 102.72335 * 179.97438 * 20 19 17 22 22 O 1.20842 * 109.61210 * 359.97438 * 21 20 19 23 23 N 1.20898 * 115.90938 * 359.73508 * 22 21 20 24 24 C 1.55055 * 102.11374 * 20.90628 * 14 13 11 25 25 O 1.42965 * 115.33509 * 266.49736 * 11 10 9 26 26 H 0.97001 * 120.00307 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.80450 * 41.66526 * 10 9 7 28 28 H 1.08995 * 113.91770 * 270.16284 * 10 9 7 29 29 H 1.08997 * 113.80898 * 89.84753 * 12 9 7 30 30 H 1.09008 * 113.80504 * 318.34569 * 12 9 7 31 31 H 1.09002 * 110.55368 * 250.73134 * 13 11 10 32 32 H 1.08999 * 110.55385 * 13.40362 * 13 11 10 33 33 H 0.96999 * 120.00110 * 335.00037 * 16 14 13 34 34 H 1.08004 * 128.64405 * 359.93912 * 20 19 17 35 35 H 1.09000 * 110.58597 * 81.94040 * 24 14 13 36 36 H 1.08993 * 110.58432 * 204.70642 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7219 -3.8110 0.0005 11 6 0.3484 -4.0798 0.6245 12 6 -0.1050 -2.7563 -0.0005 13 6 -0.3710 -5.3273 0.0953 14 6 -0.8408 -6.0575 1.3793 15 1 -0.1410 -6.8461 1.6557 16 7 -2.1935 -6.5937 1.2094 17 6 -2.5975 -7.6484 1.9450 18 8 -1.8397 -8.1547 2.7485 19 6 -3.9664 -8.1916 1.7727 20 6 -4.6031 -9.3256 2.4682 21 7 -5.7944 -9.3594 1.9328 22 8 -5.8949 -8.4789 1.1113 23 7 -4.9202 -7.7787 0.9654 24 6 -0.8272 -4.9145 2.4270 25 8 0.3234 -4.1230 2.0533 26 1 -0.4850 0.8400 0.0004 27 1 2.5577 -4.0349 0.6635 28 1 1.8433 -4.2359 -0.9958 29 1 -0.5309 -2.8639 -0.9980 30 1 -0.7174 -2.1440 0.6616 31 1 -1.2262 -5.0444 -0.5186 32 1 0.3166 -5.9532 -0.4735 33 1 -2.7984 -6.1898 0.5677 34 1 -4.1878 -9.9687 3.2301 35 1 -1.7391 -4.3213 2.3589 36 1 -0.7077 -5.3178 3.4325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053961973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:42 Heat of formation + Delta-G solvation = 109.638504 kcal Electronic energy + Delta-G solvation = -23143.954335 eV Core-core repulsion = 19443.441829 eV Total energy + Delta-G solvation = -3700.512506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.33273 -40.51594 -39.38157 -36.30495 -35.27428 -34.89584 -34.58372 -32.10862 -30.66640 -28.27388 -26.37857 -25.74548 -24.98019 -24.49240 -22.44639 -21.52521 -21.02938 -19.44730 -19.14770 -18.92462 -18.02109 -16.78767 -16.66710 -15.53505 -15.38061 -15.20021 -15.10635 -14.89716 -14.41533 -13.84673 -13.49592 -13.21976 -13.09830 -12.88096 -12.34241 -12.14457 -11.86084 -11.79955 -11.68279 -11.25016 -11.18827 -11.13271 -10.84173 -10.80702 -10.52375 -10.28639 -9.84903 -9.56702 -9.39155 -8.88119 -8.80880 -6.88336 -5.74987 -3.06755 0.32512 0.90757 2.21442 2.52979 2.99078 3.07422 3.41624 3.45420 3.46627 3.51853 4.17031 4.32097 4.36869 4.46551 4.58675 4.81579 4.91617 5.01294 5.18896 5.25690 5.29162 5.55897 5.74697 5.76532 5.85314 5.96878 6.14871 6.32297 6.47593 6.55971 6.88643 6.94306 7.18609 7.48279 7.56202 7.65589 7.97970 7.99296 9.05650 9.72269 10.58800 11.42411 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.002990 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.980637 B = 9362.150210 C = 9741.603183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.125 3.875 11 C 0.057 3.943 12 C 0.154 3.846 13 C -0.146 4.146 14 C 0.110 3.890 15 H 0.112 0.888 16 N -0.695 5.695 17 C 0.606 3.394 18 O -0.511 6.511 19 C -0.041 4.041 20 C 0.039 3.961 21 N -0.354 5.354 22 O 0.344 5.656 23 N -0.318 5.318 24 C 0.038 3.962 25 O -0.331 6.331 26 H 0.254 0.746 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.411 0.589 34 H 0.228 0.772 35 H 0.063 0.937 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 -18.665 2.252 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.330 5.330 10 C -0.001 4.001 11 C 0.015 3.985 12 C 0.028 3.972 13 C -0.185 4.185 14 C 0.005 3.995 15 H 0.130 0.870 16 N -0.347 5.347 17 C 0.388 3.612 18 O -0.384 6.384 19 C -0.207 4.207 20 C -0.147 4.147 21 N -0.077 5.077 22 O 0.117 5.883 23 N -0.038 5.038 24 C -0.040 4.040 25 O -0.248 6.248 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.743 -18.306 2.336 20.869 hybrid contribution 0.699 0.844 -0.022 1.096 sum -9.044 -17.462 2.314 19.801 Atomic orbital electron populations 1.69792 1.05031 1.25409 1.56751 1.24765 0.95687 0.97509 1.02454 0.86184 0.78467 0.83083 0.77925 1.21207 1.21573 1.21055 1.18952 0.90244 0.81829 1.43779 0.90216 1.45768 1.02011 0.99171 1.86059 1.22693 0.94090 0.86761 0.96574 1.23815 0.98658 0.94329 0.81654 1.22663 0.88848 0.88884 0.96814 1.23094 1.01624 0.97302 0.96514 1.22857 0.82279 0.97184 0.97153 0.87047 1.45832 1.16254 1.31416 1.41241 1.16471 0.82761 0.80426 0.81499 1.90865 1.52795 1.59600 1.35170 1.26267 0.97908 0.98446 0.98086 1.27767 0.88089 0.97517 1.01342 1.75099 1.20106 1.08655 1.03827 1.85105 1.32068 1.28595 1.42539 1.75416 0.95634 1.14536 1.18218 1.23890 0.91034 0.90659 0.98440 1.88909 1.44571 1.71608 1.19708 0.93645 0.92904 0.93547 0.94728 0.90328 0.89751 0.89447 0.75304 0.75526 0.91873 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 11.39 55.49 0.63 -26.90 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.69 3.70 -181.58 -0.67 -16.36 16 10 C 0.12 2.54 8.34 -3.26 -0.03 2.52 16 11 C 0.06 1.05 1.53 -90.28 -0.14 0.91 16 12 C 0.15 3.55 6.90 -3.27 -0.02 3.53 16 13 C -0.15 -1.92 6.22 -25.45 -0.16 -2.08 16 14 C 0.11 1.34 3.51 -65.79 -0.23 1.11 16 15 H 0.11 1.39 7.55 -51.93 -0.39 1.00 16 16 N -0.69 -7.16 5.19 -52.54 -0.27 -7.43 16 17 C 0.61 6.56 7.85 -12.13 -0.10 6.47 16 18 O -0.51 -6.79 16.69 5.37 0.09 -6.70 16 19 C -0.04 -0.38 7.56 -80.07 -0.61 -0.98 16 20 C 0.04 0.28 12.63 -14.29 -0.18 0.10 16 21 N -0.35 -2.94 12.22 30.71 0.38 -2.57 16 22 O 0.34 2.96 11.65 27.27 0.32 3.28 16 23 N -0.32 -2.91 12.13 33.49 0.41 -2.51 16 24 C 0.04 0.56 7.42 38.24 0.28 0.84 16 25 O -0.33 -6.44 11.29 -35.23 -0.40 -6.83 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.08 2.07 7.18 -51.92 -0.37 1.69 16 31 H 0.08 1.01 7.52 -51.93 -0.39 0.62 16 32 H 0.09 1.02 7.93 -51.93 -0.41 0.60 16 33 H 0.41 3.66 8.26 -40.82 -0.34 3.32 16 34 H 0.23 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -33.38 316.52 -5.19 -38.57 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.98 Total: -0.35 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.43 Total: 5.64 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.47 Total: -55.76 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.01 Total: -10.25 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.38 -5.19 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053961973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.207 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds