Wall clock time and date at job start Tue Mar 31 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47367 * 239.99882 * 3 2 1 5 5 H 1.48503 * 109.47272 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47423 * 120.00058 * 3 2 1 7 7 C 1.38814 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00115 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99484 * 0.02562 * 7 2 1 10 10 C 1.47714 * 134.42917 * 179.97438 * 9 7 2 11 11 C 1.53236 * 85.89364 * 155.90654 * 10 9 7 12 12 C 1.47713 * 134.43732 * 0.02973 * 9 7 2 13 13 C 1.53428 * 114.99077 * 139.52493 * 11 10 9 14 14 C 1.54999 * 103.85299 * 132.14120 * 13 11 10 15 15 H 1.08993 * 110.87233 * 262.74959 * 14 13 11 16 16 N 1.46500 * 110.87059 * 139.05948 * 14 13 11 17 17 C 1.34779 * 119.99637 * 155.00207 * 16 14 13 18 18 O 1.21496 * 120.00173 * 359.97438 * 17 16 14 19 19 C 1.48279 * 119.99905 * 180.02562 * 17 16 14 20 20 C 1.47482 * 128.71390 * 180.02562 * 19 17 16 21 21 N 1.30648 * 102.72335 * 179.97438 * 20 19 17 22 22 O 1.20842 * 109.61210 * 359.97438 * 21 20 19 23 23 N 1.20898 * 115.90938 * 359.73508 * 22 21 20 24 24 C 1.55055 * 102.11374 * 20.90628 * 14 13 11 25 25 O 1.42965 * 115.33509 * 266.49736 * 11 10 9 26 26 H 0.97001 * 120.00307 * 359.97438 * 1 2 3 27 27 H 1.09003 * 113.80450 * 41.66526 * 10 9 7 28 28 H 1.08995 * 113.91770 * 270.16284 * 10 9 7 29 29 H 1.08997 * 113.80898 * 89.84753 * 12 9 7 30 30 H 1.09008 * 113.80504 * 318.34569 * 12 9 7 31 31 H 1.09002 * 110.55368 * 250.73134 * 13 11 10 32 32 H 1.08999 * 110.55385 * 13.40362 * 13 11 10 33 33 H 0.96999 * 120.00110 * 335.00037 * 16 14 13 34 34 H 1.08004 * 128.64405 * 359.93912 * 20 19 17 35 35 H 1.09000 * 110.58597 * 81.94040 * 24 14 13 36 36 H 1.08993 * 110.58432 * 204.70642 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7219 -3.8110 0.0005 11 6 0.3484 -4.0798 0.6245 12 6 -0.1050 -2.7563 -0.0005 13 6 -0.3710 -5.3273 0.0953 14 6 -0.8408 -6.0575 1.3793 15 1 -0.1410 -6.8461 1.6557 16 7 -2.1935 -6.5937 1.2094 17 6 -2.5975 -7.6484 1.9450 18 8 -1.8397 -8.1547 2.7485 19 6 -3.9664 -8.1916 1.7727 20 6 -4.6031 -9.3256 2.4682 21 7 -5.7944 -9.3594 1.9328 22 8 -5.8949 -8.4789 1.1113 23 7 -4.9202 -7.7787 0.9654 24 6 -0.8272 -4.9145 2.4270 25 8 0.3234 -4.1230 2.0533 26 1 -0.4850 0.8400 0.0004 27 1 2.5577 -4.0349 0.6635 28 1 1.8433 -4.2359 -0.9958 29 1 -0.5309 -2.8639 -0.9980 30 1 -0.7174 -2.1440 0.6616 31 1 -1.2262 -5.0444 -0.5186 32 1 0.3166 -5.9532 -0.4735 33 1 -2.7984 -6.1898 0.5677 34 1 -4.1878 -9.9687 3.2301 35 1 -1.7391 -4.3213 2.3589 36 1 -0.7077 -5.3178 3.4325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053961973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:41 Heat of formation + Delta-G solvation = 83.887443 kcal Electronic energy + Delta-G solvation = -23145.070984 eV Core-core repulsion = 19443.441829 eV Total energy + Delta-G solvation = -3701.629156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.98152 -41.68422 -40.56583 -37.82449 -36.08986 -35.60918 -35.51387 -34.14351 -31.84221 -29.91017 -27.51715 -27.05578 -26.68278 -25.16602 -23.95000 -22.78043 -21.95848 -20.64952 -20.09757 -19.71206 -18.80356 -18.69006 -17.73005 -16.97959 -16.64389 -16.48090 -16.27071 -16.04737 -15.61386 -15.30723 -14.87586 -14.71558 -14.41122 -13.94414 -13.61488 -13.29085 -13.06543 -12.99823 -12.94213 -12.72612 -12.64824 -12.43398 -12.33331 -11.89058 -11.86044 -11.63999 -11.58856 -11.39729 -10.90825 -10.56967 -10.25333 -8.91945 -7.90139 -5.22455 -0.39496 0.31059 1.39449 1.44115 1.48144 1.53863 1.71512 2.28928 2.44430 2.47455 2.77482 2.93247 3.26039 3.36091 3.55095 3.61370 3.67970 3.69977 3.74170 4.07077 4.11826 4.44882 4.61350 4.65501 4.73365 4.75731 4.85076 4.90395 4.95520 5.08944 5.19814 5.31467 5.51157 5.93614 6.10065 6.16534 6.72809 6.92157 7.32932 7.60913 8.55432 9.26642 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.002990 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.980637 B = 9362.150210 C = 9741.603183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.641 5.641 10 C 0.123 3.877 11 C 0.076 3.924 12 C 0.149 3.851 13 C -0.133 4.133 14 C 0.128 3.872 15 H 0.117 0.883 16 N -0.688 5.688 17 C 0.613 3.387 18 O -0.535 6.535 19 C -0.053 4.053 20 C 0.055 3.945 21 N -0.363 5.363 22 O 0.343 5.657 23 N -0.322 5.322 24 C 0.033 3.967 25 O -0.365 6.365 26 H 0.248 0.752 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.419 0.581 34 H 0.257 0.743 35 H 0.060 0.940 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -20.548 2.005 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.367 5.367 10 C -0.002 4.002 11 C 0.035 3.965 12 C 0.023 3.977 13 C -0.172 4.172 14 C 0.023 3.977 15 H 0.135 0.865 16 N -0.341 5.341 17 C 0.396 3.604 18 O -0.410 6.410 19 C -0.218 4.218 20 C -0.131 4.131 21 N -0.088 5.088 22 O 0.117 5.883 23 N -0.040 5.040 24 C -0.045 4.045 25 O -0.283 6.283 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.257 0.743 34 H 0.273 0.727 35 H 0.079 0.921 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.722 -20.217 2.066 22.528 hybrid contribution 0.671 1.371 0.105 1.530 sum -9.052 -18.845 2.172 21.019 Atomic orbital electron populations 1.69991 1.06391 1.25563 1.58309 1.25620 0.96627 1.00853 1.03061 0.85145 0.77167 0.78745 0.78231 1.20047 1.21931 1.20552 1.19367 0.90806 0.83476 1.42669 0.90028 1.46188 1.03561 1.00604 1.86365 1.22948 0.95203 0.83831 0.98193 1.23393 0.97282 0.94331 0.81464 1.22637 0.87332 0.91155 0.96540 1.23001 1.02256 0.94908 0.97007 1.22555 0.83324 0.96306 0.95548 0.86488 1.45699 1.15694 1.31303 1.41390 1.16536 0.83060 0.80000 0.80814 1.90858 1.53649 1.60338 1.36144 1.26093 0.97295 0.99401 0.99029 1.28254 0.87263 0.96681 1.00856 1.75123 1.20648 1.08815 1.04184 1.85111 1.31846 1.28665 1.42722 1.75402 0.95777 1.14641 1.18198 1.24083 0.89483 0.91108 0.99840 1.88868 1.46419 1.72791 1.20269 0.94358 0.92956 0.90464 0.94412 0.94530 0.88180 0.86709 0.74330 0.72689 0.92128 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.65 11.39 21.65 0.25 -58.41 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.23 -13.61 10.70 84.03 0.90 -12.71 16 8 H 0.08 4.52 7.83 -2.92 -0.02 4.50 16 9 N -0.64 -33.61 3.70 -733.81 -2.72 -36.33 16 10 C 0.12 4.86 8.34 86.22 0.72 5.58 16 11 C 0.08 2.76 1.53 -10.45 -0.02 2.74 16 12 C 0.15 7.01 6.90 86.22 0.60 7.61 16 13 C -0.13 -3.12 6.22 31.42 0.20 -2.92 16 14 C 0.13 2.81 3.51 46.38 0.16 2.98 16 15 H 0.12 2.57 7.55 -2.39 -0.02 2.55 16 16 N -0.69 -12.55 5.19 -438.44 -2.27 -14.82 16 17 C 0.61 11.91 7.85 86.91 0.68 12.59 16 18 O -0.53 -13.04 16.69 -3.70 -0.06 -13.10 16 19 C -0.05 -0.86 7.56 44.29 0.34 -0.53 16 20 C 0.06 0.67 12.63 87.31 1.10 1.78 16 21 N -0.36 -5.32 12.22 -61.44 -0.75 -6.07 16 22 O 0.34 5.36 11.65 140.85 1.64 7.00 16 23 N -0.32 -5.32 12.13 -52.05 -0.63 -5.95 16 24 C 0.03 0.92 7.42 72.69 0.54 1.46 16 25 O -0.37 -14.15 11.29 -148.98 -1.68 -15.83 16 26 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 2.62 8.09 -2.39 -0.02 2.60 16 29 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 30 H 0.04 2.01 7.18 -2.38 -0.02 1.99 16 31 H 0.10 2.08 7.52 -2.39 -0.02 2.07 16 32 H 0.11 2.17 7.93 -2.39 -0.02 2.15 16 33 H 0.42 6.46 8.26 -92.71 -0.77 5.69 16 34 H 0.26 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -73.90 316.52 1.85 -72.06 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.37 Total: 7.60 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.68 Total: 15.01 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -6.13 Total: -121.58 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.10 Total: -21.93 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -73.90 1.85 -72.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053961973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.944 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds