Wall clock time and date at job start Tue Mar 31 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00190 * 2 1 4 4 H 1.48495 * 109.47629 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47144 * 300.00326 * 3 2 1 6 6 H 1.48502 * 109.47159 * 59.99816 * 3 2 1 7 7 C 1.38819 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99638 * 0.02562 * 7 2 1 10 10 C 1.46652 * 125.28591 * 180.02562 * 9 7 2 11 11 C 1.53518 * 107.05210 * 197.34320 * 10 9 7 12 12 H 1.08998 * 113.34970 * 211.22437 * 11 10 9 13 13 C 1.54787 * 109.68781 * 84.08996 * 11 10 9 14 14 C 1.54948 * 101.45370 * 212.92435 * 13 11 10 15 15 N 1.47340 * 104.90138 * 37.25578 * 14 13 11 16 16 C 1.34780 * 125.52646 * 156.75507 * 15 14 13 17 17 O 1.21582 * 120.00559 * 179.97438 * 16 15 14 18 18 C 1.47618 * 119.99512 * 359.97438 * 16 15 14 19 19 N 1.31868 * 126.46080 * 359.68303 * 18 16 15 20 20 N 1.28466 * 110.15648 * 179.85769 * 19 18 16 21 21 H 0.97004 * 124.93650 * 180.16260 * 20 19 18 22 22 C 1.35728 * 110.13193 * 0.42244 * 20 19 18 23 23 C 1.35537 * 107.11785 * 359.74617 * 22 20 19 24 24 F 1.35106 * 127.24361 * 179.97438 * 23 22 20 25 25 C 1.47262 * 108.95761 * 336.73846 * 15 14 13 26 26 H 1.08997 * 111.94493 * 236.64430 * 25 15 14 27 27 C 1.46491 * 125.29399 * 359.97080 * 9 7 2 28 28 H 0.96999 * 120.00393 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.91734 * 77.99009 * 10 9 7 30 30 H 1.08998 * 109.91956 * 316.69360 * 10 9 7 31 31 H 1.09002 * 111.02737 * 330.97058 * 13 11 10 32 32 H 1.08996 * 111.02504 * 94.88261 * 13 11 10 33 33 H 1.09005 * 110.35131 * 156.10965 * 14 13 11 34 34 H 1.08999 * 110.35546 * 278.39876 * 14 13 11 35 35 H 1.08000 * 126.44044 * 179.78791 * 22 20 19 36 36 H 1.08996 * 109.71350 * 58.34583 * 27 9 7 37 37 H 1.09009 * 109.67207 * 297.78003 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9386 -3.7202 0.0016 11 6 0.8544 -4.7150 -0.4363 12 1 0.9680 -5.7025 0.0111 13 6 0.7817 -4.7602 -1.9818 14 6 -0.7274 -5.0268 -2.2111 15 7 -1.4129 -4.2486 -1.1645 16 6 -2.6880 -3.8153 -1.2193 17 8 -3.1541 -3.1787 -0.2943 18 6 -3.5186 -4.1138 -2.4026 19 7 -3.1438 -4.7846 -3.4742 20 7 -4.1159 -4.8622 -4.3105 21 1 -4.0752 -5.3110 -5.1695 22 6 -5.2064 -4.2200 -3.8200 23 6 -4.8662 -3.7282 -2.6037 24 9 -5.6482 -3.0188 -1.7606 25 6 -0.4794 -4.0213 -0.0485 26 1 -0.8751 -4.3945 0.8960 27 6 -0.1332 -2.5231 0.0006 28 1 -0.4851 0.8400 -0.0004 29 1 2.2867 -3.9680 1.0044 30 1 2.7718 -3.7462 -0.7006 31 1 1.0807 -3.8059 -2.4154 32 1 1.3874 -5.5750 -2.3782 33 1 -1.0277 -4.6795 -3.1998 34 1 -0.9462 -6.0886 -2.0987 35 1 -6.1652 -4.1203 -4.3070 36 1 -0.5490 -2.0208 -0.8728 37 1 -0.5426 -2.0806 0.9088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076215162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:30 Heat of formation + Delta-G solvation = 18.233787 kcal Electronic energy + Delta-G solvation = -24277.117038 eV Core-core repulsion = 20585.013715 eV Total energy + Delta-G solvation = -3692.103322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.71771 -43.71853 -41.40669 -39.26249 -36.63526 -34.20153 -32.92958 -32.18341 -31.62475 -30.35608 -28.44648 -26.56825 -25.44447 -23.41729 -22.97463 -22.25046 -21.05617 -20.32517 -19.52899 -18.92206 -18.18260 -17.51994 -17.13508 -16.96039 -16.68627 -16.33680 -16.06141 -15.75817 -15.39390 -15.25587 -15.05714 -14.39787 -14.18501 -13.79274 -13.55667 -13.35386 -13.25086 -12.94497 -12.75048 -12.62765 -12.21695 -12.06519 -11.86200 -11.69203 -11.48601 -11.41349 -11.27104 -10.73717 -10.65033 -10.06302 -9.63741 -8.90321 -7.83501 -5.23261 0.29988 0.80125 1.41870 1.44673 1.55291 1.64502 1.99105 2.18840 2.48257 2.95963 3.32987 3.44971 3.56207 3.67729 3.75418 3.82200 3.91995 4.04444 4.34259 4.38054 4.44117 4.50130 4.62523 4.78169 4.89536 4.98067 5.10451 5.15332 5.21433 5.26082 5.45485 5.52002 5.57842 5.79093 5.95666 6.18670 6.47186 6.59629 7.04391 7.09658 7.78389 8.39912 9.24741 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.005188 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.564065 B = 5395.286644 C = 6262.368580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.074 4.074 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.093 0.907 9 N -0.622 5.622 10 C 0.137 3.863 11 C -0.091 4.091 12 H 0.138 0.862 13 C -0.114 4.114 14 C 0.106 3.894 15 N -0.595 5.595 16 C 0.594 3.406 17 O -0.576 6.576 18 C -0.053 4.053 19 N -0.226 5.226 20 N -0.341 5.341 21 H 0.480 0.520 22 C 0.013 3.987 23 C -0.016 4.016 24 F -0.124 7.124 25 C 0.115 3.885 26 H 0.078 0.922 27 C 0.202 3.798 28 H 0.241 0.759 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.008 0.992 37 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 -17.829 -14.019 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.267 4.267 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.368 4.368 8 H 0.111 0.889 9 N -0.349 5.349 10 C 0.012 3.988 11 C -0.110 4.110 12 H 0.156 0.844 13 C -0.152 4.152 14 C -0.015 4.015 15 N -0.326 5.326 16 C 0.382 3.618 17 O -0.453 6.453 18 C -0.213 4.213 19 N -0.065 5.065 20 N -0.061 5.061 21 H 0.332 0.668 22 C -0.133 4.133 23 C -0.045 4.045 24 F -0.103 7.103 25 C 0.011 3.989 26 H 0.096 0.904 27 C 0.076 3.924 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.269 0.731 36 H 0.026 0.974 37 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges -6.011 -17.809 -13.948 23.406 hybrid contribution -0.829 2.103 0.736 2.377 sum -6.839 -15.706 -13.212 21.634 Atomic orbital electron populations 1.70336 1.06741 1.24867 1.58352 1.25820 0.96437 1.01662 1.02748 0.84956 0.78500 0.79125 0.76442 1.17922 1.22163 1.22341 1.19562 0.91212 0.83412 1.42656 0.88922 1.44445 1.01644 1.01831 1.86996 1.21352 0.95278 0.83727 0.98461 1.23055 0.90977 0.99397 0.97580 0.84429 1.22793 0.95421 1.03023 0.93939 1.22690 0.91441 0.96200 0.91137 1.48444 1.09923 1.53474 1.20807 1.16992 0.80876 0.78831 0.85150 1.90830 1.73174 1.41722 1.39618 1.21813 0.94862 1.08081 0.96504 1.73648 1.15414 1.17976 0.99414 1.43292 1.06002 1.38953 1.17818 0.66832 1.23279 0.96920 0.99586 0.93488 1.17778 0.89470 1.04319 0.92978 1.91472 1.72516 1.76282 1.69996 1.22719 0.90016 0.96424 0.89783 0.90371 1.20740 0.84201 0.90622 0.96883 0.94953 0.95644 0.92579 0.93281 0.85462 0.89128 0.88368 0.73115 0.97371 0.99813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.98 10.23 21.65 0.22 -63.76 16 2 C -0.07 -4.53 5.48 84.86 0.47 -4.07 16 3 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 7 C -0.24 -14.02 10.25 84.04 0.86 -13.16 16 8 H 0.09 5.04 7.83 -2.91 -0.02 5.01 16 9 N -0.62 -33.72 3.37 -698.97 -2.36 -36.08 16 10 C 0.14 5.44 6.50 86.52 0.56 6.00 16 11 C -0.09 -2.88 3.97 -9.23 -0.04 -2.92 16 12 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 13 C -0.11 -3.11 6.32 31.87 0.20 -2.91 16 14 C 0.11 2.93 6.11 86.88 0.53 3.46 16 15 N -0.59 -23.23 2.83 -787.86 -2.23 -25.46 16 16 C 0.59 26.08 7.57 86.72 0.66 26.74 16 17 O -0.58 -31.27 16.76 -3.97 -0.07 -31.33 16 18 C -0.05 -1.78 6.96 42.45 0.30 -1.49 16 19 N -0.23 -5.26 9.34 -48.15 -0.45 -5.71 16 20 N -0.34 -4.20 6.86 -56.99 -0.39 -4.59 16 21 H 0.48 0.64 8.96 -219.99 -1.97 -1.33 16 22 C 0.01 0.19 12.06 83.47 1.01 1.20 16 23 C -0.02 -0.46 8.03 22.48 0.18 -0.28 16 24 F -0.12 -4.44 17.03 44.97 0.77 -3.67 16 25 C 0.11 4.88 3.81 45.91 0.17 5.06 16 26 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 27 C 0.20 11.41 4.63 86.67 0.40 11.81 16 28 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 31 H 0.05 1.72 7.93 -2.39 -0.02 1.70 16 32 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 2.43 6.23 -2.38 -0.01 2.42 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.25 0.69 8.06 -2.91 -0.02 0.66 16 36 H 0.01 0.53 6.89 -2.39 -0.02 0.51 16 37 H -0.02 -1.10 7.51 -2.38 -0.02 -1.12 16 Total: -1.00 -94.50 309.36 1.97 -92.53 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -0.85 Total: -1.99 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 5.30 Total: 29.43 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -5.21 Total: -135.58 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.07 Total: -31.33 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.77 Total: -3.67 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -94.50 1.97 -92.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076215162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.767 kcal (2) G-P(sol) polarization free energy of solvation -94.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds