Wall clock time and date at job start Tue Mar 31 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47166 * 239.99774 * 3 2 1 5 5 H 1.48493 * 109.47565 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47135 * 120.00089 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 13 13 O 1.42900 * 111.00699 * 204.82077 * 11 10 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 15 15 H 1.08994 * 110.71922 * 276.96131 * 14 11 10 16 16 N 1.46497 * 110.72021 * 153.86481 * 14 11 10 17 17 C 1.34781 * 119.99953 * 155.00094 * 16 14 11 18 18 O 1.21592 * 120.00100 * 359.97438 * 17 16 14 19 19 C 1.47536 * 119.99927 * 180.02562 * 17 16 14 20 20 C 1.39808 * 120.98013 * 359.72029 * 19 17 16 21 21 N 1.32187 * 118.97724 * 179.71904 * 20 19 17 22 22 C 1.31944 * 121.14074 * 0.57213 * 21 20 19 23 23 N 1.31716 * 122.19550 * 359.69845 * 22 21 20 24 24 C 1.32778 * 120.87535 * 0.02562 * 23 22 21 25 25 O 1.35274 * 120.61386 * 180.02562 * 24 23 22 26 26 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 27 27 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 29 29 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 30 30 H 0.96696 * 113.99718 * 298.55179 * 13 11 10 31 31 H 0.96996 * 120.00123 * 334.99768 * 16 14 11 32 32 H 1.07997 * 120.50846 * 359.97438 * 20 19 17 33 33 H 1.08003 * 118.89799 * 179.68257 * 22 21 20 34 34 H 0.96699 * 114.00140 * 269.97589 * 25 24 23 35 35 H 1.09004 * 109.85762 * 59.49821 * 26 9 7 36 36 H 1.08995 * 110.00297 * 298.42768 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 1 -0.3558 -3.8977 1.6973 13 8 -1.6610 -4.4539 0.1716 14 6 0.7740 -4.7541 0.0247 15 1 0.5403 -5.1019 -0.9815 16 7 1.1013 -5.8836 0.8984 17 6 1.7020 -6.9774 0.3893 18 8 1.9718 -7.0271 -0.7952 19 6 2.0311 -8.1151 1.2692 20 6 1.7345 -8.0779 2.6349 21 7 2.0417 -9.1217 3.3856 22 6 2.6297 -10.1841 2.8693 23 7 2.9346 -10.2655 1.5905 24 6 2.6588 -9.2674 0.7594 25 8 2.9738 -9.3569 -0.5531 26 6 1.9294 -3.7314 -0.0017 27 1 -0.4849 0.8401 -0.0004 28 1 -0.5266 -2.4860 -1.0215 29 1 -0.5999 -1.7581 0.6114 30 1 -2.4220 -3.9168 0.4312 31 1 0.8858 -5.8441 1.8433 32 1 1.2578 -7.2115 3.0691 33 1 2.8691 -11.0145 3.5170 34 1 3.8564 -9.0260 -0.7692 35 1 2.5552 -3.8562 0.8821 36 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077200327.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:22 Heat of formation + Delta-G solvation = -31.772632 kcal Electronic energy + Delta-G solvation = -23401.167894 eV Core-core repulsion = 19694.523342 eV Total energy + Delta-G solvation = -3706.644553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62358 -39.57299 -38.06327 -37.61345 -35.13571 -34.34091 -33.64159 -32.28206 -31.43736 -28.49307 -27.16327 -25.61120 -24.64578 -24.16473 -21.33232 -20.71534 -20.16536 -19.50568 -18.31639 -17.94065 -17.03072 -16.83619 -16.70166 -15.67840 -15.50153 -14.92645 -14.56567 -14.47016 -14.16195 -14.11136 -13.84211 -13.41544 -12.98891 -12.49057 -12.41137 -12.00330 -11.58080 -11.53950 -11.37237 -11.10038 -11.02912 -10.86690 -10.27448 -10.02674 -9.96217 -9.93837 -9.78679 -9.71496 -9.39320 -8.93406 -8.78020 -6.99794 -5.78445 -3.21320 0.05960 0.53479 2.70689 2.89598 3.08983 3.34435 3.38998 3.40016 3.45058 3.64263 3.93325 4.32849 4.40829 4.52654 4.55841 4.87773 5.07697 5.18765 5.35253 5.53989 5.56159 5.73062 5.77463 5.99664 6.06996 6.31053 6.39842 6.55929 6.78597 7.12379 7.23795 7.41168 7.48578 7.57610 7.64811 8.03044 8.14010 8.19901 9.07039 9.67403 10.29485 11.25719 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.025695 B = 0.003523 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.461943 B = 7946.052368 C = 8169.511722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.919 3.081 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.225 4.225 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.128 3.872 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.142 3.858 15 H 0.105 0.895 16 N -0.707 5.707 17 C 0.566 3.434 18 O -0.515 6.515 19 C -0.254 4.254 20 C 0.198 3.802 21 N -0.529 5.529 22 C 0.337 3.663 23 N -0.544 5.544 24 C 0.418 3.582 25 O -0.454 6.454 26 C 0.130 3.870 27 H 0.255 0.745 28 H 0.026 0.974 29 H 0.114 0.886 30 H 0.379 0.621 31 H 0.396 0.604 32 H 0.176 0.824 33 H 0.206 0.794 34 H 0.415 0.585 35 H 0.031 0.969 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -15.807 7.180 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.749 3.251 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.002 3.998 11 C 0.006 3.994 12 H 0.080 0.920 13 O -0.371 6.371 14 C 0.037 3.963 15 H 0.123 0.877 16 N -0.358 5.358 17 C 0.350 3.650 18 O -0.391 6.391 19 C -0.263 4.263 20 C 0.032 3.968 21 N -0.244 5.244 22 C 0.050 3.950 23 N -0.269 5.269 24 C 0.230 3.770 25 O -0.262 6.262 26 C 0.003 3.997 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.132 0.868 30 H 0.226 0.774 31 H 0.231 0.769 32 H 0.193 0.807 33 H 0.223 0.777 34 H 0.277 0.723 35 H 0.049 0.951 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.452 -17.038 6.478 18.392 hybrid contribution 0.257 2.089 0.109 2.108 sum 2.709 -14.949 6.587 16.559 Atomic orbital electron populations 1.69711 1.04961 1.25183 1.57393 1.24798 0.95782 0.97848 1.02022 0.86091 0.78401 0.82642 0.77993 1.21076 1.21478 1.21058 1.19052 0.90597 0.82074 1.43593 0.90219 1.44325 1.01433 0.99676 1.87299 1.22589 0.85664 0.91922 0.99625 1.23646 0.82640 0.96063 0.97017 0.91977 1.86409 1.15999 1.53366 1.81344 1.22093 0.94341 0.84721 0.95107 0.87669 1.45863 1.60832 1.16618 1.12474 1.17549 0.78574 0.81603 0.87265 1.90841 1.52380 1.80669 1.15191 1.22132 1.09546 0.97853 0.96811 1.23525 0.89111 0.95904 0.88310 1.68434 1.14159 1.01677 1.40155 1.25069 0.87093 0.94812 0.88035 1.68148 1.22847 1.30449 1.05501 1.19483 0.87212 0.85644 0.84654 1.84641 1.39594 1.85653 1.16300 1.21667 0.93604 0.85363 0.99114 0.93472 0.95580 0.86833 0.77388 0.76900 0.80677 0.77738 0.72303 0.95137 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.65 10.09 55.49 0.56 -25.09 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.05 10.28 -15.06 -0.15 -6.21 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.73 3.40 -169.86 -0.58 -15.31 16 10 C 0.13 2.91 5.62 -2.53 -0.01 2.90 16 11 C 0.07 1.18 4.06 -24.58 -0.10 1.09 16 12 H 0.06 1.01 8.01 -51.92 -0.42 0.59 16 13 O -0.57 -9.31 13.47 -35.23 -0.47 -9.78 16 14 C 0.14 2.53 3.06 -66.10 -0.20 2.33 16 15 H 0.11 2.11 7.55 -51.93 -0.39 1.72 16 16 N -0.71 -9.93 5.06 -53.07 -0.27 -10.20 16 17 C 0.57 8.34 7.78 -12.47 -0.10 8.24 16 18 O -0.51 -9.34 14.96 -15.86 -0.24 -9.58 16 19 C -0.25 -3.03 5.92 -104.56 -0.62 -3.65 16 20 C 0.20 1.91 10.81 -16.81 -0.18 1.73 16 21 N -0.53 -5.12 10.42 -14.29 -0.15 -5.27 16 22 C 0.34 2.98 12.27 -92.09 -1.13 1.85 16 23 N -0.54 -6.01 10.45 -14.32 -0.15 -6.16 16 24 C 0.42 5.09 7.85 -16.19 -0.13 4.96 16 25 O -0.45 -5.53 11.81 -38.66 -0.46 -5.99 16 26 C 0.13 2.66 7.01 -2.92 -0.02 2.64 16 27 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.11 2.84 5.86 -51.93 -0.30 2.54 16 30 H 0.38 4.75 9.11 45.56 0.42 5.17 16 31 H 0.40 4.32 6.69 -40.82 -0.27 4.05 16 32 H 0.18 1.20 6.53 -52.49 -0.34 0.85 16 33 H 0.21 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.41 3.26 9.06 45.56 0.41 3.67 16 35 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -34.39 311.98 -6.95 -41.34 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -2.13 Total: 9.51 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: -2.74 Total: 15.53 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.59 Total: -62.03 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.17 Total: -25.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.39 -6.95 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077200327.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.564 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds