Wall clock time and date at job start Tue Mar 31 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46895 * 109.47761 * 3.82977 * 3 2 1 5 5 C 1.48664 * 110.99672 * 290.12705 * 4 3 2 6 6 C 1.54685 * 104.65950 * 201.52948 * 5 4 3 7 7 C 1.53135 * 104.56477 * 23.68157 * 6 5 4 8 8 C 1.52281 * 116.37870 * 130.99126 * 7 6 5 9 9 N 1.47296 * 87.66607 * 91.51316 * 8 7 6 10 10 C 1.34775 * 135.91029 * 206.04344 * 9 8 7 11 11 O 1.21282 * 120.00577 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99768 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00182 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99746 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46889 * 89.99690 * 18 16 14 20 20 H 1.48494 * 109.47191 * 209.99639 * 18 16 14 21 21 H 1.48501 * 109.46989 * 330.00246 * 18 16 14 22 22 C 1.47288 * 88.17117 * 26.30642 * 9 8 7 23 23 C 1.48846 * 111.00154 * 174.44623 * 4 3 2 24 24 H 4.40888 * 5.52143 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47106 * 243.82563 * 3 2 1 26 26 H 1.09005 * 109.46895 * 123.83254 * 3 2 1 27 27 H 1.08998 * 110.40188 * 82.73653 * 5 4 3 28 28 H 1.09004 * 110.50000 * 320.37471 * 5 4 3 29 29 H 1.08997 * 110.42489 * 264.90845 * 6 5 4 30 30 H 1.09005 * 110.41951 * 142.44617 * 6 5 4 31 31 H 1.09003 * 113.51450 * 336.81674 * 8 7 6 32 32 H 1.08992 * 113.57970 * 206.22587 * 8 7 6 33 33 H 1.09005 * 109.46867 * 60.00428 * 12 10 9 34 34 H 1.09000 * 109.47235 * 300.00468 * 12 10 9 35 35 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 36 36 H 1.09000 * 113.51817 * 88.39463 * 22 9 8 37 37 H 1.09005 * 113.51889 * 218.99539 * 22 9 8 38 38 H 1.08998 * 110.47132 * 39.35532 * 23 4 3 39 39 H 1.08998 * 110.46781 * 276.74433 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1364 -1.3809 -0.0925 5 6 2.8641 -2.1280 1.1636 6 6 3.8741 -3.2995 1.1491 7 6 5.0110 -2.8165 0.2440 8 6 6.4238 -2.9735 0.7902 9 7 6.4682 -4.2895 0.1299 10 6 7.1297 -5.4477 0.3233 11 8 7.9136 -5.5523 1.2428 12 6 6.8952 -6.6130 -0.6031 13 16 7.9211 -8.0114 -0.0853 14 6 7.4610 -9.1967 -1.3051 15 1 6.7389 -8.9370 -2.0651 16 6 8.0273 -10.4639 -1.2899 17 7 7.6832 -11.3494 -2.2009 18 14 9.2767 -10.9128 0.0242 19 1 8.5738 -11.4839 1.2010 20 1 10.2278 -11.9156 -0.5190 21 1 10.0217 -9.6957 0.4353 22 6 5.4792 -3.7847 -0.8378 23 6 4.6182 -1.4129 -0.2295 24 1 -1.0498 -0.0004 -0.0002 25 1 3.0091 0.4541 0.9223 26 1 3.0090 0.5730 -0.8537 27 1 1.8423 -2.5075 1.1661 28 1 3.0340 -1.4906 2.0314 29 1 3.4119 -4.1951 0.7339 30 1 4.2456 -3.4938 2.1553 31 1 6.4657 -3.0310 1.8779 32 1 7.1329 -2.2558 0.3779 33 1 7.1583 -6.3263 -1.6213 34 1 5.8444 -6.9005 -0.5666 35 1 8.0787 -12.2351 -2.1901 36 1 5.9272 -3.2902 -1.6997 37 1 4.7279 -4.5233 -1.1173 38 1 5.0762 -0.6544 0.4053 39 1 4.9080 -1.2666 -1.2700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147026708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:52 Heat of formation + Delta-G solvation = 46.856020 kcal Electronic energy + Delta-G solvation = -20466.321450 eV Core-core repulsion = 17309.379706 eV Total energy + Delta-G solvation = -3156.941744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.05512 -39.83635 -38.08810 -34.69713 -34.48856 -32.36074 -31.28738 -29.91623 -27.94235 -27.58246 -27.09115 -25.47103 -22.48983 -21.05048 -19.99300 -19.47860 -18.86273 -18.01709 -17.25851 -17.07110 -16.93733 -16.69618 -16.26431 -15.77151 -15.43241 -15.32323 -14.95460 -14.83895 -14.45903 -13.91400 -13.75812 -13.59338 -13.38853 -13.06592 -13.03139 -12.77001 -12.70046 -12.40183 -12.33331 -12.05367 -11.87568 -11.44039 -11.29040 -11.19070 -11.04074 -10.94074 -10.57965 -9.79031 -9.47732 -9.03692 -8.53436 -6.25270 0.92214 1.30113 1.41407 1.49183 1.51693 1.79588 1.95095 1.96129 2.23520 2.64359 2.84541 2.98382 3.31629 3.40918 3.47852 3.68733 3.77872 3.95639 4.14447 4.24181 4.37596 4.43167 4.47462 4.53277 4.54945 4.59944 4.62877 4.72406 4.80191 4.85339 4.91061 4.92772 5.11258 5.15537 5.22368 5.68844 5.80007 5.97082 6.09111 6.56954 6.75067 6.91278 7.03307 8.59065 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.002784 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.848938 B =10053.430824 C =10470.462304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.211 4.211 3 C 0.150 3.850 4 N -0.521 5.521 5 C 0.041 3.959 6 C -0.100 4.100 7 C -0.085 4.085 8 C 0.117 3.883 9 N -0.650 5.650 10 C 0.561 3.439 11 O -0.567 6.567 12 C -0.100 4.100 13 S -0.174 6.174 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.046 3.954 17 N -0.916 5.916 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.257 1.257 21 H -0.237 1.237 22 C 0.112 3.888 23 C 0.058 3.942 24 H 0.239 0.761 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.278 0.722 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 27.264 4.424 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.211 4.211 3 C 0.024 3.976 4 N -0.245 5.245 5 C -0.087 4.087 6 C -0.138 4.138 7 C -0.086 4.086 8 C -0.005 4.005 9 N -0.385 5.385 10 C 0.350 3.650 11 O -0.446 6.446 12 C -0.251 4.251 13 S 0.053 5.947 14 C -0.677 4.677 15 H 0.079 0.921 16 C -0.160 4.160 17 N -0.554 5.554 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.181 1.181 21 H -0.161 1.161 22 C -0.009 4.009 23 C -0.070 4.070 24 H 0.255 0.745 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.317 26.500 5.256 28.919 hybrid contribution -0.407 -0.485 -0.243 0.679 sum -10.724 26.015 5.012 28.582 Atomic orbital electron populations 1.25654 0.96933 0.98735 1.00659 1.23371 0.95184 1.01655 1.00911 1.19281 0.84723 0.90364 1.03279 1.65450 1.12311 1.12511 1.34238 1.23137 0.99499 0.94918 0.91153 1.21975 0.94241 0.98312 0.99272 1.21968 0.93778 0.96393 0.96458 1.23137 0.95707 0.82337 0.99342 1.49662 1.43899 1.10882 1.34079 1.19456 0.78668 0.82599 0.84283 1.90682 1.36987 1.82958 1.33995 1.23151 1.04436 0.95105 1.02432 1.84679 1.57994 1.09078 1.42945 1.22426 1.29988 0.99846 1.15415 0.92072 1.25574 0.97784 0.95011 0.97616 1.70014 1.43915 1.06147 1.35284 0.85859 0.80180 0.80671 0.79614 1.18633 1.18090 1.16139 1.23355 0.89089 0.95062 0.93420 1.22888 0.86754 0.93893 1.03453 0.74484 0.90892 0.86845 0.90862 0.92580 0.91292 0.90885 0.90916 0.87185 0.87326 0.87639 0.91279 0.86748 0.90068 0.90533 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.70 19.25 74.32 1.43 -1.27 16 2 C -0.21 -3.14 13.08 31.13 0.41 -2.73 16 3 C 0.15 1.59 5.30 84.50 0.45 2.04 16 4 N -0.52 -6.64 5.35 -893.15 -4.77 -11.41 16 5 C 0.04 0.56 5.99 86.54 0.52 1.08 16 6 C -0.10 -1.58 6.53 31.21 0.20 -1.37 16 7 C -0.08 -1.17 1.29 -52.44 -0.07 -1.24 16 8 C 0.12 2.06 7.92 83.53 0.66 2.72 16 9 N -0.65 -16.71 3.68 -858.13 -3.16 -19.87 16 10 C 0.56 20.79 8.09 87.66 0.71 21.50 16 11 O -0.57 -25.74 16.64 -3.04 -0.05 -25.79 16 12 C -0.10 -4.03 5.98 71.24 0.43 -3.61 16 13 S -0.17 -9.04 18.55 -56.49 -1.05 -10.09 16 14 C -0.53 -31.40 10.04 67.96 0.68 -30.72 16 15 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 16 C 0.05 2.72 5.50 84.86 0.47 3.18 16 17 N -0.92 -56.27 13.97 21.65 0.30 -55.97 16 18 Si 0.92 45.52 27.74 68.60 1.90 47.42 16 19 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 22 C 0.11 1.93 7.70 83.62 0.64 2.57 16 23 C 0.06 0.52 5.95 86.01 0.51 1.03 16 24 H 0.24 1.60 7.80 -4.43 -0.03 1.57 16 25 H 0.07 0.59 7.88 -2.39 -0.02 0.57 16 26 H 0.11 0.85 8.13 -2.38 -0.02 0.83 16 27 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.06 0.67 7.82 -2.38 -0.02 0.65 16 29 H 0.07 1.27 7.85 -2.39 -0.02 1.25 16 30 H 0.07 1.22 7.83 -2.38 -0.02 1.20 16 31 H 0.07 1.41 7.93 -2.39 -0.02 1.39 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 35 H 0.28 15.73 8.31 -92.70 -0.77 14.96 16 36 H 0.11 1.44 7.99 -2.39 -0.02 1.42 16 37 H 0.08 1.48 7.95 -2.38 -0.02 1.47 16 38 H 0.08 0.44 7.98 -2.39 -0.02 0.42 16 39 H 0.11 0.72 7.86 -2.39 -0.02 0.70 16 Total: -1.00 -77.23 345.41 1.21 -76.02 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.99 Total: 6.48 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 7.04 Total: -6.80 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -7.63 Total: -87.25 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -77.23 1.21 -76.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147026708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.879 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds