Wall clock time and date at job start Tue Mar 31 2020 03:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00033 * 2 1 4 4 O 1.20822 * 119.99956 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99874 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46955 * 179.97438 * 5 3 2 7 7 C 1.34778 * 119.99707 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00344 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99868 * 180.02562 * 7 6 5 10 10 N 1.46495 * 109.47359 * 179.97438 * 9 7 6 11 11 C 1.37935 * 120.00038 * 179.97438 * 10 9 7 12 12 N 1.32611 * 120.23957 * 0.02562 * 11 10 9 13 13 C 1.32239 * 120.09150 * 179.97438 * 12 11 10 14 14 C 1.38975 * 120.56806 * 359.97438 * 13 12 11 15 15 N 1.31718 * 120.47247 * 0.02562 * 14 13 12 16 16 C 1.33908 * 119.89621 * 0.02562 * 15 14 13 17 17 C 1.40816 * 120.27629 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00320 * 179.97438 * 17 16 15 19 19 C 1.40118 * 120.00062 * 359.97047 * 17 16 15 20 20 N 1.30729 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00103 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46889 * 90.00131 * 21 19 17 23 23 H 1.48501 * 109.46890 * 210.00188 * 21 19 17 24 24 H 1.48496 * 109.47110 * 330.00208 * 21 19 17 25 25 H 1.08999 * 109.47199 * 299.99711 * 1 2 3 26 26 H 1.09005 * 109.47070 * 59.99859 * 1 2 3 27 27 H 1.09004 * 109.47351 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47338 * 59.99965 * 5 3 2 29 29 H 1.08996 * 109.47447 * 300.00318 * 5 3 2 30 30 H 0.96997 * 120.00391 * 0.02562 * 6 5 3 31 31 H 1.09004 * 109.47199 * 59.99292 * 9 7 6 32 32 H 1.09004 * 109.46913 * 299.99684 * 9 7 6 33 33 H 0.97005 * 119.99837 * 0.02562 * 10 9 7 34 34 H 1.07998 * 119.72196 * 180.02562 * 13 12 11 35 35 H 1.07998 * 119.76395 * 179.72244 * 14 13 12 36 36 H 0.97003 * 120.00359 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 5.2920 2.9949 -0.0022 8 8 6.1273 2.1157 -0.0023 9 6 5.7194 4.4401 -0.0021 10 7 7.1823 4.5168 -0.0028 11 6 7.8085 5.7458 -0.0034 12 7 7.0909 6.8610 -0.0028 13 6 7.6943 8.0377 -0.0029 14 6 9.0816 8.1206 -0.0030 15 7 9.8161 7.0273 -0.0036 16 6 9.2246 5.8259 -0.0045 17 6 10.0021 4.6518 -0.0046 18 1 9.5205 3.6851 -0.0050 19 6 11.4007 4.7376 -0.0042 20 7 11.9837 5.9077 -0.0034 21 14 12.4321 3.1801 -0.0050 22 1 12.7056 2.7684 -1.4053 23 1 13.7161 3.4365 0.6955 24 1 11.6943 2.0975 0.6941 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9557 0.7809 -0.8908 29 1 3.9564 0.7805 0.8891 30 1 3.3136 3.3830 -0.0006 31 1 5.3303 4.9340 0.8884 32 1 5.3289 4.9345 -0.8916 33 1 7.7106 3.7033 -0.0036 34 1 7.1040 8.9421 -0.0020 35 1 9.5608 9.0884 -0.0076 36 1 12.9519 5.9672 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170945621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:51 Heat of formation + Delta-G solvation = -61.773506 kcal Electronic energy + Delta-G solvation = -22411.343207 eV Core-core repulsion = 18703.397718 eV Total energy + Delta-G solvation = -3707.945488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04059 -39.69070 -38.81675 -37.08608 -34.98693 -34.49238 -33.93636 -31.49795 -30.37169 -29.27171 -27.54594 -26.04569 -25.54352 -22.14389 -21.61422 -21.21233 -20.56407 -18.36733 -17.73171 -17.52770 -17.14266 -16.86929 -16.30824 -15.62494 -15.49563 -15.37008 -14.84090 -14.32578 -14.08800 -13.87608 -13.57596 -13.46567 -12.89191 -12.81915 -12.75659 -12.49864 -12.16457 -11.98593 -11.38698 -11.29446 -11.27299 -11.05073 -10.58838 -10.16999 -9.96879 -9.85211 -9.47112 -9.38286 -9.36355 -8.56717 -7.34163 -6.80705 -6.39160 -4.39295 1.66957 1.98924 2.58017 2.68911 3.05401 3.09752 3.11071 3.14763 3.26985 3.94417 4.20143 4.38579 4.66475 4.74054 4.77037 4.78618 4.91054 5.07541 5.08878 5.74099 5.79496 5.82181 5.94957 5.96277 6.06380 6.18566 6.45101 6.75099 7.02747 7.10850 7.16757 7.25885 7.67994 8.00957 8.07718 8.11737 8.43992 8.65364 8.88830 9.45782 10.01674 10.26877 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.003252 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.330714 B = 8606.902549 C = 9999.485249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.460 3.540 4 O -0.502 6.502 5 C 0.128 3.872 6 N -0.728 5.728 7 C 0.516 3.484 8 O -0.529 6.529 9 C 0.130 3.870 10 N -0.714 5.714 11 C 0.260 3.740 12 N -0.501 5.501 13 C -0.089 4.089 14 C 0.033 3.967 15 N -0.449 5.449 16 C 0.196 3.804 17 C -0.418 4.418 18 H 0.086 0.914 19 C 0.068 3.932 20 N -0.713 5.713 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 -10.293 0.006 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.390 6.390 5 C 0.003 3.997 6 N -0.387 5.387 7 C 0.303 3.697 8 O -0.404 6.404 9 C 0.001 3.999 10 N -0.360 5.360 11 C 0.013 3.987 12 N -0.223 5.223 13 C -0.243 4.243 14 C -0.131 4.131 15 N -0.166 5.166 16 C 0.062 3.938 17 C -0.452 4.452 18 H 0.104 0.896 19 C -0.158 4.158 20 N -0.335 5.335 21 Si 0.732 3.268 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.252 0.748 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.255 0.745 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.000 -10.325 0.011 19.043 hybrid contribution -0.075 -0.424 -0.010 0.430 sum -16.075 -10.749 0.001 19.338 Atomic orbital electron populations 1.23341 0.75527 1.04055 1.02853 1.86487 1.23996 1.32613 1.83890 1.23630 0.91981 0.81785 0.72367 1.90691 1.66832 1.36258 1.45196 1.20598 0.86553 0.85919 1.06604 1.45732 1.08434 1.06949 1.77561 1.21071 0.81247 0.92544 0.74849 1.90715 1.51121 1.50027 1.48518 1.20622 0.85729 0.89998 1.03538 1.43416 1.02238 1.05686 1.84646 1.19213 0.90120 0.85492 1.03842 1.67264 1.39644 0.97782 1.17589 1.22228 0.93334 0.93697 1.15019 1.23166 0.91824 0.98124 0.99942 1.69516 1.34628 0.96087 1.16402 1.19017 0.87076 0.93256 0.94404 1.19329 0.90982 0.92428 1.42486 0.89631 1.26028 0.98664 0.97297 0.93788 1.70101 1.10720 1.24492 1.28188 0.86306 0.79220 0.81962 0.79335 1.19342 1.20116 1.18302 0.91603 0.91609 0.87737 0.86828 0.86823 0.74850 0.89844 0.89845 0.74459 0.85943 0.85812 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.87 10.57 -39.26 -0.41 -3.29 16 3 C 0.46 4.28 8.03 36.00 0.29 4.57 16 4 O -0.50 -5.80 15.42 -18.75 -0.29 -6.09 16 5 C 0.13 1.17 6.27 -5.20 -0.03 1.14 16 6 N -0.73 -8.10 5.53 -61.47 -0.34 -8.44 16 7 C 0.52 7.59 7.90 -10.98 -0.09 7.50 16 8 O -0.53 -9.39 15.67 5.56 0.09 -9.31 16 9 C 0.13 2.15 6.17 -5.19 -0.03 2.12 16 10 N -0.71 -15.14 5.57 -61.07 -0.34 -15.48 16 11 C 0.26 6.45 7.51 -154.83 -1.16 5.29 16 12 N -0.50 -12.09 9.71 -11.67 -0.11 -12.21 16 13 C -0.09 -2.07 11.22 -17.10 -0.19 -2.26 16 14 C 0.03 0.81 11.21 -17.33 -0.19 0.61 16 15 N -0.45 -12.49 8.03 -10.79 -0.09 -12.57 16 16 C 0.20 5.36 6.56 -84.61 -0.56 4.81 16 17 C -0.42 -11.01 8.89 -37.90 -0.34 -11.35 16 18 H 0.09 2.11 6.12 -52.49 -0.32 1.78 16 19 C 0.07 1.72 5.50 -17.32 -0.10 1.62 16 20 N -0.71 -18.91 11.48 55.56 0.64 -18.28 16 21 Si 0.91 18.60 29.56 -169.99 -5.03 13.58 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 25 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.41 4.19 7.44 -40.82 -0.30 3.88 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.41 8.98 5.42 -40.82 -0.22 8.76 16 34 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 35 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 36 H 0.27 6.58 8.29 -40.82 -0.34 6.25 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -33.19 323.03 -6.13 -39.32 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -3.78 Total: 12.58 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: -1.33 Total: 15.31 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.24 Total: -66.97 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.62 Total: -18.68 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.19 -6.13 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170945621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.451 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds