Wall clock time and date at job start Tue Mar 31 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00573 * 2 1 4 4 H 1.48497 * 109.47274 * 89.99976 * 3 2 1 5 5 H 1.48502 * 109.47451 * 210.00331 * 3 2 1 6 6 H 1.48503 * 109.46852 * 330.00348 * 3 2 1 7 7 C 1.37888 * 119.99512 * 179.72752 * 2 1 3 8 8 H 1.07992 * 119.99780 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99939 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47511 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99653 * 294.30173 * 10 9 7 12 12 C 1.53247 * 109.33990 * 172.74099 * 11 10 9 13 13 N 1.47084 * 108.51604 * 53.83123 * 12 11 10 14 14 C 1.34780 * 120.87626 * 128.79602 * 13 12 11 15 15 O 1.21485 * 120.00476 * 354.28654 * 14 13 12 16 16 C 1.48426 * 119.99643 * 174.29225 * 14 13 12 17 17 N 1.32494 * 119.14918 * 327.31581 * 16 14 13 18 18 C 1.32039 * 120.80035 * 179.71863 * 17 16 14 19 19 C 1.39102 * 119.12525 * 0.54201 * 18 17 16 20 20 F 1.35094 * 120.77916 * 179.75133 * 19 18 17 21 21 C 1.39101 * 118.44509 * 359.73288 * 19 18 17 22 22 N 1.32041 * 119.12671 * 359.97438 * 21 19 18 23 23 C 1.47079 * 118.23898 * 308.81281 * 13 12 11 24 24 C 1.46899 * 111.00660 * 169.99672 * 10 9 7 25 25 H 0.97002 * 119.99611 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46890 * 300.00053 * 9 7 2 27 27 H 1.09007 * 109.47486 * 59.99476 * 9 7 2 28 28 H 1.09000 * 109.49540 * 292.70265 * 11 10 9 29 29 H 1.08997 * 109.49778 * 52.78493 * 11 10 9 30 30 H 1.08988 * 109.63189 * 294.11980 * 12 11 10 31 31 H 1.09003 * 109.62858 * 173.53449 * 12 11 10 32 32 H 1.07999 * 120.43779 * 180.25099 * 18 17 16 33 33 H 1.07999 * 120.43585 * 180.02562 * 21 19 18 34 34 H 1.09007 * 109.62389 * 291.47683 * 23 13 12 35 35 H 1.09000 * 109.62677 * 170.90285 * 23 13 12 36 36 H 1.09001 * 109.49283 * 307.21668 * 24 10 9 37 37 H 1.09009 * 109.48987 * 67.29275 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7000 7 6 2.0044 -1.1942 0.0057 8 1 1.4643 -2.1293 0.0105 9 6 3.5114 -1.1943 0.0063 10 7 4.0010 -2.5792 0.0121 11 6 3.6438 -3.2585 1.2647 12 6 4.0094 -4.7430 1.1591 13 7 5.4255 -4.8491 0.7759 14 6 6.2753 -5.6259 1.4766 15 8 5.9017 -6.1676 2.4978 16 6 7.6678 -5.8194 1.0006 17 7 7.9094 -5.8265 -0.3021 18 6 9.1365 -5.9905 -0.7613 19 6 10.1793 -6.1684 0.1420 20 9 11.4467 -6.3441 -0.2912 21 6 9.8865 -6.1607 1.5019 22 7 8.6364 -5.9854 1.8891 23 6 5.8896 -4.0849 -0.3919 24 6 5.4499 -2.6265 -0.2253 25 1 -0.4850 0.8401 0.0004 26 1 3.8750 -0.6845 -0.8859 27 1 3.8745 -0.6764 0.8940 28 1 4.1911 -2.8070 2.0922 29 1 2.5726 -3.1594 1.4396 30 1 3.3883 -5.2201 0.4013 31 1 3.8536 -5.2279 2.1228 32 1 9.3274 -5.9913 -1.8242 33 1 10.6714 -6.2954 2.2313 34 1 5.4490 -4.4989 -1.2990 35 1 6.9767 -4.1349 -0.4538 36 1 5.6884 -2.0689 -1.1311 37 1 5.9721 -2.1838 0.6229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197203699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:26 Heat of formation + Delta-G solvation = -17.838564 kcal Electronic energy + Delta-G solvation = -23227.560198 eV Core-core repulsion = 19533.892662 eV Total energy + Delta-G solvation = -3693.667537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.24650 -42.58063 -40.86688 -39.06087 -36.24862 -35.20387 -34.41885 -33.16129 -32.01587 -30.57186 -27.74983 -26.24566 -26.17562 -24.61827 -23.55948 -22.45574 -20.78873 -19.70302 -19.10262 -18.79222 -18.65602 -17.72234 -17.26974 -16.60672 -16.48059 -16.42256 -16.07340 -15.75473 -15.44935 -15.24135 -15.21039 -14.91326 -14.47039 -14.40905 -14.29227 -13.74205 -13.28947 -13.09597 -12.88371 -12.57380 -12.51902 -12.25573 -12.22809 -11.91485 -11.76977 -11.47107 -11.24270 -10.78029 -10.58302 -10.52332 -9.91646 -9.10492 -8.26767 -6.30139 -0.93948 -0.28955 1.23819 1.36296 1.37039 1.43191 1.47693 2.30733 2.35393 2.50163 2.59317 2.91132 3.04902 3.15697 3.43128 3.52852 3.68806 3.91764 4.01128 4.17577 4.24561 4.37674 4.45342 4.52604 4.71834 4.80019 4.82045 4.94109 4.98900 5.02274 5.10302 5.30513 5.50047 5.53112 5.89900 6.10778 6.26238 6.48452 6.60635 6.76526 6.79332 7.33361 8.89522 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.003406 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.714418 B = 8217.666947 C = 8780.355307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.245 1.245 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.043 0.957 9 C 0.172 3.828 10 N -0.536 5.536 11 C 0.056 3.944 12 C 0.127 3.873 13 N -0.586 5.586 14 C 0.583 3.417 15 O -0.551 6.551 16 C 0.262 3.738 17 N -0.466 5.466 18 C 0.129 3.871 19 C 0.032 3.968 20 F -0.104 7.104 21 C 0.124 3.876 22 N -0.476 5.476 23 C 0.125 3.875 24 C 0.033 3.967 25 H 0.266 0.734 26 H 0.038 0.962 27 H -0.018 1.018 28 H 0.020 0.980 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.229 0.771 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.027 -11.338 -2.943 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.169 1.169 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.061 0.939 9 C 0.045 3.955 10 N -0.261 5.261 11 C -0.073 4.073 12 C 0.005 3.995 13 N -0.318 5.318 14 C 0.367 3.633 15 O -0.427 6.427 16 C -0.007 4.007 17 N -0.182 5.182 18 C -0.039 4.039 19 C 0.007 3.993 20 F -0.082 7.082 21 C -0.043 4.043 22 N -0.191 5.191 23 C 0.003 3.997 24 C -0.095 4.095 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.000 1.000 28 H 0.038 0.962 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.245 0.755 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 23.514 -11.643 -2.461 26.354 hybrid contribution 1.054 1.141 0.520 1.638 sum 24.568 -10.502 -1.940 26.789 Atomic orbital electron populations 1.70043 1.08114 1.28066 1.52534 1.25816 0.95551 1.03042 0.94442 0.85750 0.79658 0.78867 0.78851 1.19857 1.16888 1.20779 1.21254 0.90938 0.93406 1.49821 0.93863 1.19957 0.94413 0.85927 0.95222 1.61840 1.12639 1.17377 1.34226 1.22266 1.01480 0.93379 0.90160 1.21789 0.79527 0.95876 1.02353 1.48086 1.09615 1.44143 1.29997 1.17539 0.83257 0.79700 0.82758 1.90776 1.77028 1.50329 1.24574 1.22404 0.94423 0.97564 0.86270 1.68602 1.23378 1.11707 1.14525 1.24252 0.85133 0.91037 1.03430 1.19768 0.81834 1.02492 0.95178 1.91624 1.34838 1.91934 1.89843 1.24115 0.93718 0.92028 0.94478 1.68255 1.00769 1.10766 1.39322 1.22207 1.01114 0.88851 0.87502 1.22671 0.87933 0.97379 1.01552 0.92469 0.94364 0.99983 0.96176 0.90328 0.89344 0.88939 0.75467 0.76431 0.88864 0.87068 0.88051 0.95845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 2 C 0.01 0.51 5.47 84.66 0.46 0.97 16 3 Si 0.94 43.12 27.46 68.60 1.88 45.00 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.25 -10.22 6.55 99.48 0.65 -9.57 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.52 -28.97 8.96 25.60 0.23 -28.74 16 8 H 0.04 2.70 7.37 -2.91 -0.02 2.68 16 9 C 0.17 7.91 3.79 85.56 0.32 8.24 16 10 N -0.54 -21.02 4.62 -899.82 -4.16 -25.17 16 11 C 0.06 2.14 5.46 86.39 0.47 2.61 16 12 C 0.13 4.09 6.61 86.35 0.57 4.66 16 13 N -0.59 -17.43 3.01 -820.67 -2.47 -19.90 16 14 C 0.58 18.24 7.62 86.96 0.66 18.90 16 15 O -0.55 -20.87 16.47 -3.67 -0.06 -20.93 16 16 C 0.26 6.49 6.84 137.63 0.94 7.43 16 17 N -0.47 -8.61 7.33 -188.97 -1.39 -10.00 16 18 C 0.13 1.36 11.30 84.87 0.96 2.32 16 19 C 0.03 0.33 7.40 22.68 0.17 0.50 16 20 F -0.10 -0.92 17.30 44.97 0.78 -0.15 16 21 C 0.12 1.65 11.30 84.87 0.96 2.61 16 22 N -0.48 -10.95 10.26 -188.97 -1.94 -12.89 16 23 C 0.13 3.14 5.90 86.35 0.51 3.65 16 24 C 0.03 1.00 5.62 86.38 0.49 1.49 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.04 1.71 7.04 -2.39 -0.02 1.69 16 27 H -0.02 -0.81 7.55 -2.38 -0.02 -0.83 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 3.40 6.67 -2.39 -0.02 3.39 16 30 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.09 3.01 7.04 -2.39 -0.02 2.99 16 32 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.11 2.33 5.03 -2.39 -0.01 2.32 16 36 H 0.10 2.69 7.99 -2.39 -0.02 2.67 16 37 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -73.66 313.13 0.74 -72.92 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.05 Total: 4.62 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 6.74 Total: 24.63 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -9.65 Total: -126.10 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.78 Total: -0.15 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -73.66 0.74 -72.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197203699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.080 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds