Wall clock time and date at job start Tue Mar 31 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35573 * 116.99586 * 2 1 4 4 N 1.32691 * 120.55587 * 0.30181 * 3 2 1 5 5 C 1.31823 * 120.80267 * 180.31346 * 4 3 2 6 6 N 1.31765 * 121.97725 * 359.65986 * 5 4 3 7 7 C 1.32456 * 121.03290 * 0.02562 * 6 5 4 8 8 C 1.38875 * 119.08385 * 0.02562 * 7 6 5 9 9 N 1.39919 * 120.89932 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99832 * 335.51013 * 9 8 7 11 11 O 1.21385 * 119.99878 * 354.36941 * 10 9 8 12 12 C 1.49334 * 120.00094 * 174.37626 * 10 9 8 13 13 O 1.21369 * 119.99831 * 359.97438 * 12 10 9 14 14 N 1.34771 * 120.00344 * 179.97438 * 12 10 9 15 15 C 1.46495 * 120.00222 * 179.97438 * 14 12 10 16 16 H 1.08999 * 109.47087 * 324.99555 * 15 14 12 17 17 C 1.53004 * 109.47371 * 84.99975 * 15 14 12 18 18 C 1.50705 * 109.47128 * 204.99850 * 15 14 12 19 19 H 1.08004 * 119.99880 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00016 * 179.97438 * 18 15 14 21 21 N 1.31517 * 120.00091 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 120.00143 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47302 * 269.99972 * 22 20 18 24 24 H 1.48501 * 109.46812 * 30.00349 * 22 20 18 25 25 H 1.48498 * 109.47197 * 149.99879 * 22 20 18 26 26 H 1.08996 * 109.47383 * 60.00323 * 1 2 3 27 27 H 1.09002 * 109.46439 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47049 * 300.00174 * 1 2 3 29 29 H 1.07993 * 119.01718 * 179.68129 * 5 4 3 30 30 H 1.08003 * 120.46282 * 180.02562 * 7 6 5 31 31 H 0.96998 * 119.99884 * 155.50010 * 9 8 7 32 32 H 0.96999 * 119.99545 * 359.97438 * 14 12 10 33 33 H 1.09008 * 109.46695 * 300.00160 * 17 15 14 34 34 H 1.08999 * 109.47357 * 59.99746 * 17 15 14 35 35 H 1.08993 * 109.47166 * 179.97438 * 17 15 14 36 36 H 0.97005 * 119.99880 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2080 0.0000 4 7 1.3325 2.3278 0.0060 5 6 1.9258 3.5049 -0.0001 6 7 3.2379 3.6250 -0.0058 7 6 4.0214 2.5570 -0.0060 8 6 3.4421 1.2949 -0.0007 9 7 4.2335 0.1410 -0.0002 10 6 5.4891 0.1848 -0.4883 11 8 5.8982 1.1960 -1.0209 12 6 6.3768 -1.0105 -0.3740 13 8 5.9678 -2.0214 0.1589 14 7 7.6321 -0.9669 -0.8625 15 6 8.5031 -2.1394 -0.7498 16 1 8.2986 -2.6552 0.1884 17 6 8.2371 -3.0869 -1.9213 18 6 9.9442 -1.6991 -0.7772 19 1 10.1869 -0.6508 -0.8697 20 6 10.9527 -2.6346 -0.6841 21 7 10.6571 -3.9112 -0.5720 22 14 12.7389 -2.0890 -0.7187 23 1 13.2238 -2.0707 -2.1222 24 1 12.8517 -0.7269 -0.1381 25 1 13.5612 -3.0357 0.0768 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.3182 4.3977 -0.0002 30 1 5.0959 2.6661 -0.0102 31 1 3.8787 -0.6904 0.3516 32 1 7.9588 -0.1591 -1.2887 33 1 7.1947 -3.4053 -1.9015 34 1 8.4416 -2.5712 -2.8595 35 1 8.8855 -3.9590 -1.8377 36 1 11.3667 -4.5694 -0.5061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255505644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:19 Heat of formation + Delta-G solvation = -48.674946 kcal Electronic energy + Delta-G solvation = -22940.007309 eV Core-core repulsion = 19232.629817 eV Total energy + Delta-G solvation = -3707.377492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.79325 -40.29008 -38.76698 -38.25900 -35.74507 -34.87090 -33.38532 -32.48118 -30.70892 -29.21207 -27.89985 -25.65567 -25.32292 -24.17101 -23.42069 -21.05384 -19.90788 -19.21599 -19.01639 -17.76665 -17.57705 -16.65115 -16.23947 -15.73928 -15.62160 -15.48082 -15.14424 -14.88801 -14.45924 -14.28292 -13.80476 -13.60748 -13.24563 -12.53701 -12.47986 -12.03606 -11.87093 -11.71115 -11.44676 -11.30339 -11.17597 -11.02934 -10.84665 -10.42172 -10.38177 -10.30711 -9.71169 -9.21494 -9.15338 -8.67437 -8.48835 -8.19940 -6.21045 -4.30983 0.51147 0.83376 1.70697 2.40428 2.48613 3.21915 3.28931 3.31736 3.42701 3.61642 3.74655 3.87879 4.02504 4.29091 4.46637 4.69091 4.92105 4.95195 4.99521 5.12212 5.19894 5.33451 5.72587 6.11870 6.50696 6.66343 6.72584 6.79017 6.87313 6.97261 7.13490 7.30892 7.56418 7.65333 7.76882 7.80259 8.00503 8.34853 8.53608 8.79081 9.36351 10.84978 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.003198 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.782411 B = 8752.300021 C = 9487.333143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.339 3.661 4 N -0.556 5.556 5 C 0.307 3.693 6 N -0.517 5.517 7 C 0.161 3.839 8 C 0.038 3.962 9 N -0.631 5.631 10 C 0.510 3.490 11 O -0.505 6.505 12 C 0.497 3.503 13 O -0.531 6.531 14 N -0.665 5.665 15 C 0.262 3.738 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.538 4.538 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.272 1.272 25 H -0.285 1.285 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.202 0.798 30 H 0.195 0.805 31 H 0.430 0.570 32 H 0.403 0.597 33 H 0.017 0.983 34 H 0.030 0.970 35 H 0.095 0.905 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.900 9.595 1.072 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.149 3.851 4 N -0.286 5.286 5 C 0.019 3.981 6 N -0.235 5.235 7 C -0.003 4.003 8 C -0.063 4.063 9 N -0.279 5.279 10 C 0.293 3.707 11 O -0.379 6.379 12 C 0.275 3.725 13 O -0.409 6.409 14 N -0.314 5.314 15 C 0.161 3.839 16 H 0.073 0.927 17 C -0.208 4.208 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.520 5.520 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.197 1.197 25 H -0.210 1.210 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.218 0.782 30 H 0.211 0.789 31 H 0.270 0.730 32 H 0.238 0.762 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.155 9.797 1.093 20.659 hybrid contribution 1.016 -0.448 -0.104 1.116 sum -17.139 9.349 0.989 19.548 Atomic orbital electron populations 1.22983 0.76095 1.03646 1.02783 1.86236 1.23838 1.23424 1.86976 1.19867 0.87648 0.85935 0.91640 1.68100 1.40941 0.98759 1.20838 1.24688 0.88830 0.93675 0.90929 1.68508 1.06147 1.32941 1.15906 1.23674 1.02257 0.84519 0.89885 1.18785 0.88143 0.90048 1.09355 1.42998 1.12996 1.11866 1.60019 1.21133 0.82171 0.89877 0.77505 1.90692 1.73783 1.32898 1.40527 1.19491 0.84068 0.86941 0.82016 1.90754 1.74135 1.31940 1.44116 1.46517 1.11021 1.19299 1.54551 1.19013 0.87328 0.81021 0.96551 0.92676 1.22109 0.98588 1.02260 0.97814 1.21189 0.89542 0.94072 1.52819 0.91665 1.24876 0.99588 0.94733 0.94365 1.69891 1.33134 1.00486 1.48505 0.86383 0.83612 0.78604 0.78174 1.20433 1.19700 1.21015 0.91881 0.87972 0.91859 0.78178 0.78858 0.73036 0.76227 0.96427 0.95046 0.88654 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.29 10.03 -18.42 -0.18 -3.48 16 3 C 0.34 4.11 7.55 -16.51 -0.12 3.98 16 4 N -0.56 -6.14 9.38 -14.48 -0.14 -6.28 16 5 C 0.31 3.11 12.28 -92.15 -1.13 1.98 16 6 N -0.52 -6.33 10.43 -14.49 -0.15 -6.48 16 7 C 0.16 2.13 9.99 -17.05 -0.17 1.96 16 8 C 0.04 0.50 6.49 -83.26 -0.54 -0.04 16 9 N -0.63 -8.73 5.30 -10.00 -0.05 -8.78 16 10 C 0.51 8.22 7.71 -11.64 -0.09 8.13 16 11 O -0.51 -8.46 13.70 5.47 0.07 -8.39 16 12 C 0.50 9.54 7.85 -11.64 -0.09 9.45 16 13 O -0.53 -11.34 16.15 5.48 0.09 -11.25 16 14 N -0.67 -13.68 5.06 -55.40 -0.28 -13.96 16 15 C 0.26 6.40 2.56 -69.08 -0.18 6.22 16 16 H 0.06 1.52 7.58 -51.93 -0.39 1.12 16 17 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 18 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 19 H 0.07 1.62 7.74 -52.48 -0.41 1.22 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -24.06 11.32 55.43 0.63 -23.43 16 22 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.44 8.12 -51.93 -0.42 0.01 16 29 H 0.20 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.19 2.65 5.89 -52.48 -0.31 2.34 16 31 H 0.43 5.60 7.93 -40.82 -0.32 5.28 16 32 H 0.40 7.65 8.01 -40.82 -0.33 7.32 16 33 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -29.59 320.60 -5.27 -34.86 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -3.74 Total: 9.82 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: -1.32 Total: 17.31 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.01 Total: -58.93 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.02 Total: -23.11 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.59 -5.27 -34.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255505644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.811 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds