Wall clock time and date at job start Tue Mar 31 2020 04:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00464 * 2 1 4 4 H 1.48498 * 109.47110 * 239.99794 * 3 2 1 5 5 H 1.48504 * 109.47172 * 119.99950 * 3 2 1 6 6 H 1.48502 * 109.47300 * 0.02562 * 3 2 1 7 7 C 1.37878 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.53945 * 113.74460 * 276.67510 * 9 7 2 11 11 N 1.47576 * 86.11717 * 222.05050 * 10 9 7 12 12 C 1.34783 * 134.49068 * 204.64013 * 11 10 9 13 13 O 1.21284 * 120.00057 * 174.79242 * 12 11 10 14 14 C 1.50692 * 120.00038 * 354.79364 * 12 11 10 15 15 C 1.52879 * 118.99699 * 79.25086 * 14 12 11 16 16 C 1.53119 * 60.43601 * 110.84327 * 15 14 12 17 17 H 1.09000 * 119.81710 * 247.83966 * 16 15 14 18 18 C 1.54710 * 117.55129 * 91.98777 * 16 15 14 19 19 C 1.54961 * 102.70067 * 319.12322 * 18 16 15 20 20 N 1.47374 * 117.18498 * 284.45306 * 14 12 11 21 21 C 1.34778 * 126.94469 * 15.70582 * 20 14 12 22 22 O 1.21283 * 119.99701 * 4.89676 * 21 20 14 23 23 C 1.50703 * 120.00290 * 184.90106 * 21 20 14 24 24 O 1.42894 * 109.47109 * 179.97438 * 23 21 20 25 25 C 1.47582 * 91.02004 * 24.64055 * 11 10 9 26 26 H 0.96996 * 120.00299 * 179.97438 * 1 2 3 27 27 H 1.08995 * 112.94418 * 48.41542 * 9 7 2 28 28 H 1.09002 * 113.76740 * 336.35268 * 10 9 7 29 29 H 1.08995 * 113.77294 * 107.74553 * 10 9 7 30 30 H 1.08998 * 117.45589 * 218.45957 * 15 14 12 31 31 H 1.08996 * 117.45643 * 3.23084 * 15 14 12 32 32 H 1.08998 * 110.76240 * 77.42542 * 18 16 15 33 33 H 1.08997 * 110.76635 * 200.63534 * 18 16 15 34 34 H 1.08998 * 110.65685 * 80.89283 * 19 18 16 35 35 H 1.08995 * 110.65789 * 204.00281 * 19 18 16 36 36 H 1.09006 * 109.46722 * 299.99997 * 23 21 20 37 37 H 1.08997 * 109.46883 * 59.99187 * 23 21 20 38 38 H 0.96710 * 113.99858 * 180.02562 * 24 23 21 39 39 H 1.08994 * 113.76969 * 221.06281 * 25 11 10 40 40 H 1.08998 * 113.76952 * 89.65585 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 3.1031 1.6962 1.2125 6 1 1.2844 2.7464 0.0006 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 0.7995 -2.9544 1.3991 11 7 1.2207 -4.3068 0.9852 12 6 0.8824 -5.5570 1.3582 13 8 1.3380 -6.5113 0.7642 14 6 -0.0620 -5.7692 2.5131 15 6 -1.5637 -5.5979 2.2836 16 6 -0.9953 -6.9935 2.5550 17 1 -1.0040 -7.7452 1.7657 18 6 -0.9577 -7.4777 4.0239 19 6 -0.5098 -6.2073 4.7900 20 7 0.4775 -5.5679 3.8697 21 6 1.6229 -4.9394 4.2010 22 8 2.2831 -4.3907 3.3443 23 6 2.0831 -4.9184 5.6359 24 8 3.3132 -4.1976 5.7311 25 6 2.1613 -3.7407 -0.0012 26 1 -0.4850 -0.8400 -0.0004 27 1 0.4611 -2.5338 -0.7510 28 1 1.3963 -2.5374 2.2103 29 1 -0.2733 -2.8605 1.5670 30 1 -2.1431 -5.1280 3.0783 31 1 -1.8952 -5.3789 1.2687 32 1 -1.9471 -7.7973 4.3508 33 1 -0.2329 -8.2824 4.1472 34 1 -1.3553 -5.5396 4.9549 35 1 -0.0393 -6.4747 5.7361 36 1 1.3276 -4.4315 6.2527 37 1 2.2331 -5.9403 5.9843 38 1 3.6693 -4.1441 6.6286 39 1 2.1755 -4.2745 -0.9513 40 1 3.1580 -3.5546 0.3987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:18 Heat of formation + Delta-G solvation = -30.280419 kcal Electronic energy + Delta-G solvation = -24890.909756 eV Core-core repulsion = 21287.870254 eV Total energy + Delta-G solvation = -3603.039502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98126 -38.88252 -38.43180 -36.69617 -36.33208 -33.14604 -32.73029 -30.67745 -28.74277 -27.97096 -25.15554 -24.81778 -24.51419 -22.93676 -21.24692 -20.12022 -19.55201 -18.36979 -17.51465 -16.96218 -16.60622 -16.39578 -15.88317 -15.61958 -14.96517 -14.90601 -14.61144 -14.00009 -13.87942 -13.69896 -13.30089 -13.06804 -12.75129 -12.55139 -12.33165 -12.15229 -11.74917 -11.55457 -11.33718 -11.31534 -10.89830 -10.78326 -10.57683 -10.48569 -10.39132 -10.09375 -9.64452 -9.51440 -9.34555 -8.53404 -8.49698 -8.40902 -7.69491 -6.40296 -4.10711 2.32378 2.54793 3.22292 3.45472 3.47590 3.51392 3.62795 3.65968 4.12004 4.22422 4.39386 4.53228 4.64810 4.66886 4.72999 4.82998 4.87364 5.00399 5.07620 5.29038 5.30909 5.47245 5.51989 5.63920 5.79320 6.00717 6.05484 6.07167 6.23481 6.39243 6.44018 6.58391 6.74853 6.83040 7.28900 7.44054 7.46259 8.13242 8.20558 8.41045 8.56556 8.76612 8.86573 9.60853 10.99344 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.005327 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.025873 B = 5254.562561 C = 6006.949661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.588 4.588 8 H 0.055 0.945 9 C 0.011 3.989 10 C 0.112 3.888 11 N -0.606 5.606 12 C 0.572 3.428 13 O -0.563 6.563 14 C 0.072 3.928 15 C -0.143 4.143 16 C -0.147 4.147 17 H 0.129 0.871 18 C -0.103 4.103 19 C 0.095 3.905 20 N -0.589 5.589 21 C 0.517 3.483 22 O -0.477 6.477 23 C 0.072 3.928 24 O -0.543 6.543 25 C 0.118 3.882 26 H 0.268 0.732 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.058 0.942 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 -12.600 14.858 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.897 3.103 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.626 4.626 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.011 4.011 11 N -0.336 5.336 12 C 0.359 3.641 13 O -0.444 6.444 14 C -0.018 4.018 15 C -0.182 4.182 16 C -0.167 4.167 17 H 0.147 0.853 18 C -0.140 4.140 19 C -0.027 4.027 20 N -0.327 5.327 21 C 0.304 3.696 22 O -0.348 6.348 23 C -0.009 4.009 24 O -0.348 6.348 25 C -0.004 4.004 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.819 -11.163 13.536 17.956 hybrid contribution 0.155 -1.836 0.936 2.067 sum -3.664 -12.999 14.472 19.795 Atomic orbital electron populations 1.70810 1.06842 1.30576 1.46039 1.25860 0.96481 1.02670 0.93142 0.83536 0.74912 0.75142 0.76700 1.21318 1.21330 1.20815 1.21814 0.94297 0.90672 1.55825 0.92626 1.20664 0.94853 0.93194 0.92100 1.23735 0.97984 0.77484 1.01854 1.50054 1.40654 1.04255 1.38638 1.18411 0.81044 0.82286 0.82361 1.90628 1.56733 1.40785 1.56225 1.21285 0.90859 1.05173 0.84441 1.23446 0.93146 0.97350 1.04224 1.23701 1.02627 0.91657 0.98729 0.85343 1.22268 1.02418 0.96927 0.92430 1.22876 0.92153 0.94268 0.93401 1.48381 1.21565 1.57269 1.05528 1.20118 0.79842 0.78608 0.91017 1.90902 1.52986 1.40716 1.50153 1.21699 0.88375 0.97106 0.93767 1.86647 1.37534 1.76753 1.33830 1.23309 0.94568 0.92480 0.90017 0.92115 0.93039 0.89982 0.93231 0.87756 0.86834 0.89243 0.89763 0.90181 0.89485 0.90691 0.90829 0.76799 0.92330 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.69 13.65 55.43 0.76 -25.93 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 3 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.59 -16.46 8.77 -34.44 -0.30 -16.76 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.01 0.29 3.09 -90.84 -0.28 0.01 16 10 C 0.11 2.68 7.31 -2.98 -0.02 2.66 16 11 N -0.61 -14.14 2.50 -178.44 -0.45 -14.58 16 12 C 0.57 12.69 6.30 -10.99 -0.07 12.62 16 13 O -0.56 -13.97 17.68 5.55 0.10 -13.87 16 14 C 0.07 1.20 2.97 -132.03 -0.39 0.81 16 15 C -0.14 -1.88 9.62 -26.73 -0.26 -2.13 16 16 C -0.15 -1.83 6.93 -89.13 -0.62 -2.45 16 17 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 18 C -0.10 -0.86 7.03 -24.80 -0.17 -1.04 16 19 C 0.10 0.82 6.54 -1.42 -0.01 0.81 16 20 N -0.59 -8.58 3.34 -155.48 -0.52 -9.10 16 21 C 0.52 8.72 7.90 -10.98 -0.09 8.63 16 22 O -0.48 -10.77 12.40 -14.35 -0.18 -10.94 16 23 C 0.07 0.80 6.46 36.01 0.23 1.03 16 24 O -0.54 -7.12 13.19 -55.14 -0.73 -7.85 16 25 C 0.12 2.85 8.39 -2.97 -0.02 2.82 16 26 H 0.27 7.81 7.04 -40.82 -0.29 7.53 16 27 H 0.05 1.37 7.61 -51.93 -0.40 0.98 16 28 H 0.08 2.14 7.03 -51.93 -0.37 1.78 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.13 7.14 -51.93 -0.37 0.76 16 31 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.59 7.28 -51.93 -0.38 0.22 16 35 H 0.09 0.49 7.40 -51.93 -0.38 0.11 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.38 2.52 9.12 45.56 0.42 2.94 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.08 1.91 8.09 -51.93 -0.42 1.49 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -38.47 334.35 -7.93 -46.40 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.77 Total: 3.35 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.10 Total: 7.58 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.21 Total: -49.62 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.81 Total: -32.66 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -38.47 -7.93 -46.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.120 kcal (2) G-P(sol) polarization free energy of solvation -38.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds