Wall clock time and date at job start Tue Mar 31 2020 04:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53949 * 113.74589 * 276.67478 * 9 7 2 11 11 N 1.47574 * 86.11804 * 222.05032 * 10 9 7 12 12 C 1.34781 * 134.49483 * 204.63522 * 11 10 9 13 13 O 1.21281 * 120.00396 * 180.02562 * 12 11 10 14 14 C 1.50700 * 119.99459 * 0.02562 * 12 11 10 15 15 H 1.09001 * 115.56229 * 34.24458 * 14 12 11 16 16 C 1.53148 * 117.51521 * 248.41624 * 14 12 11 17 17 C 1.52319 * 59.82534 * 252.56574 * 16 14 12 18 18 C 1.53284 * 128.82047 * 117.89236 * 17 16 14 19 19 N 1.47729 * 85.85323 * 116.62750 * 18 17 16 20 20 C 1.34782 * 134.39204 * 204.09517 * 19 18 17 21 21 O 1.21285 * 119.99533 * 180.02562 * 20 19 18 22 22 C 1.50694 * 119.99899 * 0.02562 * 20 19 18 23 23 O 1.42902 * 109.46826 * 180.02562 * 22 20 19 24 24 C 1.47721 * 91.21376 * 24.09594 * 19 18 17 25 25 C 1.47583 * 91.01934 * 24.63724 * 11 10 9 26 26 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 27 27 H 1.09004 * 112.94881 * 48.41102 * 9 7 2 28 28 H 1.09003 * 113.76162 * 336.35097 * 10 9 7 29 29 H 1.08991 * 113.76848 * 107.74320 * 10 9 7 30 30 H 1.09004 * 117.52116 * 0.02562 * 16 14 12 31 31 H 1.09003 * 117.51805 * 145.12559 * 16 14 12 32 32 H 1.08995 * 113.81411 * 230.85868 * 18 17 16 33 33 H 1.08997 * 113.81040 * 2.39497 * 18 17 16 34 34 H 1.08996 * 109.47215 * 299.99695 * 22 20 19 35 35 H 1.08996 * 109.47153 * 60.00489 * 22 20 19 36 36 H 0.96704 * 113.99807 * 180.02562 * 23 22 20 37 37 H 1.08998 * 113.81429 * 221.66872 * 24 19 18 38 38 H 1.09002 * 113.91591 * 90.14868 * 24 19 18 39 39 H 1.08999 * 113.77005 * 221.06103 * 25 11 10 40 40 H 1.09004 * 113.87008 * 89.67045 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 0.7999 -2.9531 1.4018 11 7 1.2212 -4.3059 0.9891 12 6 0.8830 -5.5558 1.3631 13 8 1.4105 -6.5109 0.8336 14 6 -0.1505 -5.7665 2.4395 15 1 -0.9578 -5.0345 2.4661 16 6 0.3267 -6.3438 3.7753 17 6 -0.4897 -7.2025 2.8180 18 6 -0.0878 -8.5026 2.1125 19 7 -1.1719 -9.1347 2.8920 20 6 -1.4254 -10.3918 3.3070 21 8 -2.4250 -10.6273 3.9522 22 6 -0.4669 -11.5044 2.9693 23 8 -0.9516 -12.7328 3.5154 24 6 -1.8671 -7.8392 3.0349 25 6 2.1616 -3.7405 0.0021 26 1 -0.4850 -0.8401 -0.0004 27 1 0.4613 -2.5345 -0.7487 28 1 1.3967 -2.5353 2.2126 29 1 -0.2730 -2.8591 1.5695 30 1 1.3881 -6.5707 3.8755 31 1 -0.1666 -5.9914 4.6812 32 1 -0.2666 -8.4934 1.0374 33 1 0.9085 -8.8569 2.3770 34 1 -0.3839 -11.5964 1.8864 35 1 0.5129 -11.2805 3.3911 36 1 -0.3829 -13.4942 3.3367 37 1 -2.2793 -7.6683 4.0294 38 1 -2.5794 -7.6296 2.2369 39 1 2.1759 -4.2752 -0.9476 40 1 3.1590 -3.5536 0.4001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271968427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:51 Heat of formation + Delta-G solvation = -16.639281 kcal Electronic energy + Delta-G solvation = -23017.381883 eV Core-core repulsion = 19414.933905 eV Total energy + Delta-G solvation = -3602.447978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88441 -39.57660 -38.54382 -37.12130 -36.48730 -34.59418 -32.94368 -29.83013 -29.09540 -26.78657 -26.13780 -25.53096 -25.05066 -23.28829 -20.80082 -19.95433 -18.91867 -18.32816 -18.05913 -17.29202 -16.86566 -16.50249 -16.40435 -16.00589 -15.30084 -14.97474 -14.95345 -14.49222 -13.87679 -13.60098 -13.53513 -13.33305 -13.19720 -12.75415 -12.42848 -12.29744 -11.99548 -11.77032 -11.58288 -11.10805 -11.04717 -10.85753 -10.73916 -10.60318 -10.45305 -10.23623 -9.82531 -9.74972 -9.53509 -8.93646 -8.70153 -8.60208 -8.07562 -6.57906 -4.31819 2.29969 2.37672 2.75193 3.20963 3.34582 3.36026 3.52072 3.61055 3.86665 4.05024 4.29838 4.38281 4.41974 4.61692 4.76876 4.85537 4.94355 5.04946 5.11819 5.19262 5.28509 5.34790 5.46209 5.51496 5.58598 5.69641 5.74262 5.83370 5.94835 6.05652 6.16196 6.32410 6.35716 6.52903 7.13790 7.20237 7.43188 7.90696 7.93542 8.21001 8.26379 8.51689 8.64545 9.41154 10.81541 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.046238 B = 0.002621 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.416658 B =10681.351674 C =10985.438094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.071 2.929 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.597 4.597 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.096 3.904 11 N -0.633 5.633 12 C 0.554 3.446 13 O -0.563 6.563 14 C -0.154 4.154 15 H 0.127 0.873 16 C -0.111 4.111 17 C -0.152 4.152 18 C 0.157 3.843 19 N -0.646 5.646 20 C 0.536 3.464 21 O -0.526 6.526 22 C 0.066 3.934 23 O -0.550 6.550 24 C 0.153 3.847 25 C 0.113 3.887 26 H 0.270 0.730 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.386 0.614 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -15.135 5.509 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.181 4.181 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.635 4.635 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.026 4.026 11 N -0.366 5.366 12 C 0.343 3.657 13 O -0.444 6.444 14 C -0.175 4.175 15 H 0.145 0.855 16 C -0.149 4.149 17 C -0.154 4.154 18 C 0.035 3.965 19 N -0.385 5.385 20 C 0.325 3.675 21 O -0.401 6.401 22 C -0.015 4.015 23 O -0.354 6.354 24 C 0.031 3.969 25 C -0.009 4.009 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.074 -14.155 5.917 15.342 hybrid contribution 0.691 -1.869 -0.248 2.008 sum 0.765 -16.024 5.668 17.014 Atomic orbital electron populations 1.70800 1.06897 1.30791 1.45257 1.25892 0.96442 1.02807 0.92941 0.83496 0.74723 0.74901 0.76977 1.21290 1.21314 1.20913 1.21835 0.94330 0.90626 1.56685 0.92481 1.20654 0.94927 0.93146 0.91930 1.23888 0.99138 0.77332 1.02260 1.50342 1.41898 1.04560 1.39781 1.19171 0.82368 0.81922 0.82230 1.90611 1.56597 1.40321 1.56870 1.22137 1.01539 0.96623 0.97234 0.85498 1.22814 1.00474 0.99196 0.92382 1.22494 0.97709 0.91101 1.04052 1.22638 0.91116 0.86332 0.96401 1.49896 1.27311 1.06221 1.55030 1.19927 0.86533 0.81468 0.79615 1.90729 1.28324 1.81809 1.39261 1.21745 0.95942 0.84944 0.98893 1.86567 1.52453 1.16974 1.79454 1.22610 0.93285 0.78270 1.02753 1.23365 0.94296 0.92752 0.90466 0.91908 0.92748 0.90143 0.92112 0.87708 0.87163 0.88255 0.89585 0.90424 0.90461 0.76642 0.89539 0.88857 0.91945 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.65 55.43 0.76 -23.82 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.07 22.86 29.90 -169.99 -5.08 17.77 16 4 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.60 -14.76 8.77 -34.44 -0.30 -15.07 16 8 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.01 0.28 3.09 -90.84 -0.28 0.00 16 10 C 0.10 1.85 8.13 -2.98 -0.02 1.82 16 11 N -0.63 -11.66 3.61 -178.42 -0.64 -12.31 16 12 C 0.55 9.42 7.84 -10.98 -0.09 9.34 16 13 O -0.56 -10.63 15.86 5.56 0.09 -10.54 16 14 C -0.15 -1.98 5.94 -92.04 -0.55 -2.53 16 15 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 16 C -0.11 -1.19 10.23 -27.00 -0.28 -1.46 16 17 C -0.15 -1.71 3.03 -155.02 -0.47 -2.18 16 18 C 0.16 1.72 7.04 -3.22 -0.02 1.70 16 19 N -0.65 -7.59 3.61 -181.77 -0.66 -8.24 16 20 C 0.54 7.16 8.13 -10.99 -0.09 7.07 16 21 O -0.53 -9.37 17.23 -14.36 -0.25 -9.62 16 22 C 0.07 0.60 7.27 36.00 0.26 0.87 16 23 O -0.55 -5.60 13.19 -55.14 -0.73 -6.32 16 24 C 0.15 1.64 8.85 -3.22 -0.03 1.61 16 25 C 0.11 2.20 8.39 -2.97 -0.02 2.18 16 26 H 0.27 7.21 7.04 -40.82 -0.29 6.93 16 27 H 0.05 1.28 7.61 -51.93 -0.40 0.89 16 28 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.14 8.01 -51.93 -0.42 0.72 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 1.58 9.12 45.56 0.42 2.00 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -33.25 347.75 -8.22 -41.46 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.96 Total: 2.48 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.99 Total: 3.89 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.54 Total: -44.37 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.89 Total: -26.48 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.08 Total: 17.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.25 -8.22 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271968427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.823 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds