Wall clock time and date at job start Tue Mar 31 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99968 * 2 1 4 4 H 1.09000 * 109.46959 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.47379 * 239.99719 * 3 2 1 6 6 O 1.42903 * 109.46980 * 119.99635 * 3 2 1 7 7 N 1.41597 * 114.00103 * 204.99894 * 6 3 2 8 8 C 1.34776 * 119.99876 * 180.27759 * 7 6 3 9 9 O 1.21364 * 120.00413 * 359.72624 * 8 7 6 10 10 C 1.49310 * 119.99757 * 179.72816 * 8 7 6 11 11 O 1.21403 * 120.00339 * 0.02562 * 10 8 7 12 12 N 1.34776 * 119.99757 * 179.97438 * 10 8 7 13 13 C 1.40303 * 119.99783 * 180.02562 * 12 10 8 14 14 C 1.40719 * 126.09670 * 359.68832 * 13 12 10 15 15 N 1.30877 * 108.36944 * 179.85862 * 14 13 12 16 16 N 1.40062 * 108.44184 * 0.40083 * 15 14 13 17 17 C 1.37286 * 126.05905 * 179.74091 * 16 15 14 18 18 H 1.07998 * 120.00349 * 174.13026 * 17 16 15 19 19 C 1.39004 * 120.00099 * 354.12835 * 17 16 15 20 20 N 1.31278 * 120.00193 * 5.93685 * 19 17 16 21 21 Si 1.86805 * 120.00196 * 185.93387 * 19 17 16 22 22 H 1.48490 * 109.47088 * 94.97965 * 21 19 17 23 23 H 1.48500 * 109.47046 * 214.98324 * 21 19 17 24 24 H 1.48499 * 109.47010 * 334.97948 * 21 19 17 25 25 C 1.35791 * 126.09657 * 180.02562 * 13 12 10 26 26 H 1.08005 * 119.99714 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00441 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00441 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46740 * 60.00157 * 5 3 2 30 30 H 1.08996 * 109.47295 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.47583 * 300.00240 * 5 3 2 32 32 H 0.97001 * 119.99934 * 0.02562 * 7 6 3 33 33 H 0.97001 * 120.00145 * 359.97438 * 12 10 8 34 34 H 1.07996 * 125.81563 * 359.97438 * 14 13 12 35 35 H 0.97000 * 120.00507 * 179.97438 * 20 19 17 36 36 H 1.07997 * 126.25422 * 359.94030 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3863 -1.2491 6 8 2.8850 1.3809 1.1668 7 7 3.1895 2.7030 1.5720 8 6 3.9618 2.9146 2.6561 9 8 4.3921 1.9720 3.2880 10 6 4.2879 4.3087 3.0798 11 8 3.8571 5.2516 2.4480 12 7 5.0597 4.5203 4.1642 13 6 5.3657 5.8303 4.5626 14 6 4.9429 7.0110 3.9245 15 7 5.4239 8.0325 4.5864 16 7 6.1771 7.5478 5.6632 17 6 6.8467 8.3093 6.5887 18 1 7.3206 7.8363 7.4361 19 6 6.9148 9.6891 6.4351 20 7 6.2429 10.2764 5.4723 21 14 7.9623 10.7079 7.5989 22 1 9.3004 10.9300 6.9946 23 1 7.3043 12.0173 7.8395 24 1 8.1148 9.9864 8.8878 25 6 6.1280 6.1847 5.6290 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 2.3164 1.3285 -2.1392 30 1 3.4877 2.3304 -1.2494 31 1 3.6515 0.5578 -1.2492 32 1 2.8453 3.4564 1.0672 33 1 5.4030 3.7669 4.6696 34 1 4.3251 7.0651 3.0404 35 1 6.2902 11.2394 5.3653 36 1 6.6072 5.5108 6.3237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328728548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:42 Heat of formation + Delta-G solvation = 26.776528 kcal Electronic energy + Delta-G solvation = -22284.287613 eV Core-core repulsion = 18580.181942 eV Total energy + Delta-G solvation = -3704.105671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04079 -41.13468 -39.71694 -38.86886 -36.28085 -35.51872 -34.98916 -32.93567 -32.28864 -30.73960 -29.88557 -27.23617 -25.64202 -24.21902 -22.94871 -22.18076 -21.36271 -20.93885 -19.93029 -19.25213 -18.85155 -17.57567 -17.41566 -17.15422 -16.83128 -16.42006 -15.91179 -15.67690 -15.38693 -15.30783 -14.94046 -14.86101 -14.47929 -14.43321 -13.51765 -13.38944 -13.18291 -13.01776 -12.90539 -12.86176 -12.57545 -12.20403 -12.06340 -11.99712 -11.92585 -11.08405 -10.86965 -10.75031 -10.56400 -10.19446 -10.13517 -8.63894 -8.48917 -6.26104 0.18793 0.23699 1.26836 1.29648 1.42264 1.59909 1.71658 1.99395 2.03928 2.24876 2.50070 2.79999 3.07454 3.32436 3.46153 3.70118 3.89766 4.06185 4.40395 4.40630 4.52506 4.69336 4.74714 4.94464 4.96458 4.99430 5.16605 5.17510 5.29085 5.42905 5.58333 5.65152 5.74261 5.93168 6.22292 6.42075 6.66688 6.80325 6.99125 7.41596 7.63092 8.50527 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.051946 B = 0.002505 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.888961 B =11177.064344 C =11446.626631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.172 4.172 3 C 0.077 3.923 4 H 0.097 0.903 5 C -0.172 4.172 6 O -0.148 6.148 7 N -0.557 5.557 8 C 0.536 3.464 9 O -0.531 6.531 10 C 0.506 3.494 11 O -0.536 6.536 12 N -0.574 5.574 13 C -0.058 4.058 14 C -0.045 4.045 15 N -0.309 5.309 16 N -0.163 5.163 17 C -0.353 4.353 18 H 0.142 0.858 19 C -0.004 4.004 20 N -0.820 5.820 21 Si 1.019 2.981 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.244 1.244 25 C -0.071 4.071 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.430 0.570 33 H 0.425 0.575 34 H 0.179 0.821 35 H 0.278 0.722 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -15.701 -8.719 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.191 4.191 3 C 0.019 3.981 4 H 0.115 0.885 5 C -0.230 4.230 6 O -0.153 6.153 7 N -0.260 5.260 8 C 0.317 3.683 9 O -0.406 6.406 10 C 0.287 3.713 11 O -0.414 6.414 12 N -0.220 5.220 13 C -0.164 4.164 14 C -0.220 4.220 15 N -0.140 5.140 16 N 0.069 4.931 17 C -0.484 4.484 18 H 0.159 0.841 19 C -0.217 4.217 20 N -0.447 5.447 21 Si 0.838 3.162 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.167 1.167 25 C -0.222 4.222 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.275 0.725 33 H 0.263 0.737 34 H 0.196 0.804 35 H 0.088 0.912 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.039 -14.417 -8.662 18.233 hybrid contribution 0.120 -0.427 -0.077 0.450 sum -6.919 -14.844 -8.739 18.563 Atomic orbital electron populations 1.24248 0.95028 1.03893 0.95319 1.22609 0.96056 0.96470 1.03961 1.22077 0.92537 0.98658 0.84782 0.88478 1.22308 1.00544 1.02935 0.97182 1.90661 1.72662 1.04114 1.47815 1.46921 1.51142 0.99538 1.28434 1.19725 0.79188 0.88982 0.80443 1.90759 1.52252 1.43677 1.53958 1.19438 0.81424 0.88122 0.82342 1.90669 1.52975 1.43401 1.54374 1.41942 1.46824 1.06664 1.26520 1.17239 1.13015 0.83856 1.02262 1.24291 1.05494 0.89352 1.02904 1.78163 1.13519 1.21473 1.00842 1.44844 1.27967 1.03328 1.16962 1.20649 1.32355 0.90245 1.05129 0.84092 1.26870 0.97527 0.98345 0.98919 1.70368 1.33861 1.11490 1.29016 0.84576 0.76998 0.76827 0.77826 1.19200 1.20093 1.16654 1.22019 1.10333 0.86034 1.03814 0.85723 0.87331 0.86083 0.88981 0.92102 0.91796 0.72517 0.73654 0.80424 0.91213 0.79374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 14.32 67.79 0.97 -0.49 16 2 C -0.17 -2.30 9.15 25.66 0.23 -2.07 16 3 C 0.08 1.20 3.22 29.85 0.10 1.30 16 4 H 0.10 1.22 7.58 -2.39 -0.02 1.20 16 5 C -0.17 -2.32 9.54 71.98 0.69 -1.63 16 6 O -0.15 -3.58 10.73 -21.40 -0.23 -3.81 16 7 N -0.56 -13.93 6.37 -174.60 -1.11 -15.04 16 8 C 0.54 16.48 8.03 87.23 0.70 17.18 16 9 O -0.53 -18.57 16.88 14.09 0.24 -18.34 16 10 C 0.51 17.52 7.85 87.23 0.69 18.21 16 11 O -0.54 -20.59 13.62 -3.41 -0.05 -20.64 16 12 N -0.57 -20.62 5.45 -305.32 -1.66 -22.28 16 13 C -0.06 -2.58 6.90 37.82 0.26 -2.32 16 14 C -0.04 -2.31 10.85 85.44 0.93 -1.39 16 15 N -0.31 -17.93 10.41 -56.44 -0.59 -18.52 16 16 N -0.16 -8.82 3.73 -189.99 -0.71 -9.53 16 17 C -0.35 -18.21 10.24 84.02 0.86 -17.35 16 18 H 0.14 6.32 7.84 -2.91 -0.02 6.30 16 19 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 20 N -0.82 -46.02 11.84 21.66 0.26 -45.76 16 21 Si 1.02 37.67 29.56 68.60 2.03 39.70 16 22 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.24 -8.15 7.11 99.48 0.71 -7.44 16 25 C -0.07 -3.22 11.50 83.41 0.96 -2.26 16 26 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 27 H 0.11 0.90 7.83 -2.91 -0.02 0.87 16 28 H 0.12 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.43 8.84 7.89 -92.71 -0.73 8.11 16 33 H 0.43 12.88 8.29 -92.71 -0.77 12.11 16 34 H 0.18 8.91 5.92 -2.91 -0.02 8.89 16 35 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.19 6.79 8.06 -2.91 -0.02 6.76 16 Total: -1.00 -72.44 329.26 4.66 -67.77 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.36 Total: 37.01 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 6.85 Total: 9.43 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.82 Total: -111.14 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.04 Total: -42.79 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -72.44 4.66 -67.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328728548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.550 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds