Wall clock time and date at job start Tue Mar 31 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35537 * 116.99870 * 2 1 4 4 C 1.39010 * 120.47138 * 180.25951 * 3 2 1 5 5 C 1.39116 * 118.28740 * 180.23725 * 4 3 2 6 6 N 1.39072 * 120.48419 * 179.78175 * 5 4 3 7 7 C 1.34780 * 119.99951 * 179.79444 * 6 5 4 8 8 O 1.21573 * 119.99739 * 5.63824 * 7 6 5 9 9 N 1.34776 * 120.00158 * 185.64403 * 7 6 5 10 10 C 1.47581 * 134.49389 * 180.02562 * 9 7 6 11 11 C 1.53948 * 86.11601 * 155.35094 * 10 9 7 12 12 O 1.42898 * 113.73995 * 269.15121 * 11 10 9 13 13 C 1.50702 * 113.73824 * 137.95303 * 11 10 9 14 14 H 1.07996 * 120.00330 * 17.11426 * 13 11 10 15 15 C 1.37878 * 119.99812 * 197.11725 * 13 11 10 16 16 N 1.31508 * 119.99946 * 189.73667 * 15 13 11 17 17 Si 1.86800 * 119.99813 * 9.73501 * 15 13 11 18 18 H 1.48504 * 109.47072 * 180.02562 * 17 15 13 19 19 H 1.48510 * 109.47310 * 299.99668 * 17 15 13 20 20 H 1.48498 * 109.47607 * 60.00077 * 17 15 13 21 21 C 1.47812 * 134.45405 * 359.85455 * 9 7 6 22 22 N 1.33078 * 119.02705 * 359.50925 * 5 4 3 23 23 C 1.31722 * 120.85073 * 0.25214 * 22 5 4 24 24 N 1.31776 * 121.88641 * 359.97438 * 23 22 5 25 25 H 1.09001 * 109.46929 * 299.99542 * 1 2 3 26 26 H 1.09000 * 109.47370 * 59.99947 * 1 2 3 27 27 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.85210 * 0.02601 * 4 3 2 29 29 H 0.96995 * 120.00329 * 359.79139 * 6 5 4 30 30 H 1.09002 * 113.76685 * 41.04595 * 10 9 7 31 31 H 1.08999 * 113.76973 * 269.65430 * 10 9 7 32 32 H 0.96701 * 114.00148 * 174.33250 * 12 11 10 33 33 H 0.97003 * 120.00066 * 354.90647 * 16 15 13 34 34 H 1.09007 * 113.76549 * 90.38899 * 21 9 7 35 35 H 1.08999 * 113.83884 * 318.92804 * 21 9 7 36 36 H 1.08000 * 119.05523 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4319 1.2919 -0.0054 5 6 4.0157 2.5546 -0.0001 6 7 5.3996 2.6919 -0.0006 7 6 5.9549 3.9200 0.0004 8 8 5.2507 4.9054 0.1051 9 7 7.2909 4.0556 -0.1149 10 6 8.2145 5.2062 -0.1500 11 6 9.2885 4.2257 0.3551 12 8 9.3875 4.1645 1.7793 13 6 10.6257 4.3899 -0.3202 14 1 10.8475 5.2951 -0.8660 15 6 11.5659 3.3846 -0.2414 16 7 12.7937 3.5982 -0.6612 17 14 11.0957 1.7191 0.4619 18 1 12.2772 0.8198 0.4370 19 1 10.6311 1.8864 1.8625 20 1 10.0052 1.1272 -0.3540 21 6 8.4192 3.1109 -0.2538 22 7 3.2306 3.6290 -0.0001 23 6 1.9190 3.5072 0.0000 24 7 1.3294 2.3287 -0.0004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 4.0408 0.4000 -0.0101 29 1 5.9653 1.9040 -0.0017 30 1 7.9656 5.9913 0.5640 31 1 8.4042 5.5868 -1.1537 32 1 9.9987 3.4885 2.1025 33 1 13.0195 4.4366 -1.0937 34 1 8.6692 2.8742 -1.2881 35 1 8.3334 2.2264 0.3775 36 1 1.3094 4.3988 -0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338891431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:28 Heat of formation + Delta-G solvation = 3.083565 kcal Electronic energy + Delta-G solvation = -23204.468002 eV Core-core repulsion = 19499.334927 eV Total energy + Delta-G solvation = -3705.133075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42771 -40.08697 -38.82880 -37.88240 -35.13633 -34.30870 -32.69156 -32.42218 -31.38709 -28.77189 -27.59071 -25.89622 -25.03213 -24.55627 -23.25622 -20.78341 -19.54569 -19.16328 -18.09130 -17.80669 -17.44005 -16.43371 -16.17382 -15.79753 -15.55851 -15.53687 -15.11124 -14.68808 -14.50521 -14.18197 -13.95134 -13.61239 -13.20682 -12.86621 -12.34393 -12.30084 -12.14968 -11.90844 -11.38983 -11.26465 -10.86148 -10.80317 -10.50324 -10.28003 -9.88542 -9.52449 -9.49059 -9.15155 -9.03697 -8.87840 -8.59175 -8.08178 -6.78167 -4.53749 0.86388 1.14473 2.23362 2.85188 2.99800 3.07014 3.27288 3.36836 3.72838 3.88831 3.96482 4.11252 4.35452 4.76243 4.78528 4.91199 5.00628 5.05675 5.11079 5.23564 5.32783 5.39912 5.69288 5.80470 5.88712 6.02887 6.16946 6.25305 6.40559 6.61451 6.68668 6.89858 7.24088 7.46352 8.02495 8.07347 8.26961 8.50726 8.62921 8.77805 9.22712 10.58336 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.003583 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.442908 B = 7813.868910 C = 8528.126433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.381 3.619 4 C -0.294 4.294 5 C 0.458 3.542 6 N -0.659 5.659 7 C 0.713 3.287 8 O -0.535 6.535 9 N -0.649 5.649 10 C 0.153 3.847 11 C 0.200 3.800 12 O -0.566 6.566 13 C -0.614 4.614 14 H 0.071 0.929 15 C 0.034 3.966 16 N -0.888 5.888 17 Si 1.043 2.957 18 H -0.277 1.277 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.054 3.946 22 N -0.528 5.528 23 C 0.363 3.637 24 N -0.604 5.604 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.416 0.584 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.367 0.633 33 H 0.274 0.726 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 -8.385 0.432 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.196 3.804 4 C -0.322 4.322 5 C 0.219 3.781 6 N -0.306 5.306 7 C 0.416 3.584 8 O -0.406 6.406 9 N -0.387 5.387 10 C 0.031 3.969 11 C 0.158 3.842 12 O -0.375 6.375 13 C -0.652 4.652 14 H 0.090 0.910 15 C -0.174 4.174 16 N -0.521 5.521 17 Si 0.871 3.129 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.068 4.068 22 N -0.252 5.252 23 C 0.073 3.927 24 N -0.338 5.338 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.169 0.831 29 H 0.253 0.747 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.217 0.783 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -19.155 -8.127 0.863 20.826 hybrid contribution 0.352 -0.136 -0.490 0.619 sum -18.803 -8.263 0.373 20.542 Atomic orbital electron populations 1.22929 0.76651 1.03147 1.02832 1.86215 1.23355 1.24116 1.87027 1.19574 0.88589 0.84972 0.87224 1.20963 0.93475 0.98345 1.19368 1.18028 0.84576 0.88472 0.87048 1.42775 1.03398 1.09935 1.74496 1.15532 0.81226 0.82734 0.78918 1.91009 1.59409 1.35831 1.54399 1.49424 1.01751 1.12921 1.74648 1.23164 0.82744 0.90137 1.00841 1.20409 0.93526 0.90223 0.79992 1.86401 1.67838 1.61245 1.22021 1.22214 0.99112 1.06207 1.37658 0.91047 1.25844 0.92822 1.03035 0.95710 1.70791 1.17437 1.28746 1.35104 0.84131 0.76521 0.76078 0.76169 1.20290 1.20684 1.19915 1.24750 0.84424 0.95548 1.02128 1.68560 1.05632 1.31034 1.19992 1.24680 0.87537 0.93671 0.86775 1.68119 1.41580 0.99126 1.24976 0.91978 0.91978 0.88410 0.83106 0.74688 0.90576 0.88963 0.78292 0.91495 0.88625 0.91859 0.78136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.29 10.49 -18.31 -0.19 -3.48 16 3 C 0.38 4.78 7.52 -16.77 -0.13 4.65 16 4 C -0.29 -3.67 9.99 -38.97 -0.39 -4.06 16 5 C 0.46 6.97 7.45 -154.38 -1.15 5.82 16 6 N -0.66 -10.25 5.39 -15.72 -0.08 -10.33 16 7 C 0.71 13.89 8.71 -86.92 -0.76 13.13 16 8 O -0.53 -12.05 15.38 5.30 0.08 -11.97 16 9 N -0.65 -12.59 3.61 -183.88 -0.66 -13.25 16 10 C 0.15 3.12 8.23 -2.97 -0.02 3.10 16 11 C 0.20 4.34 1.06 -90.85 -0.10 4.25 16 12 O -0.57 -12.60 13.46 -35.23 -0.47 -13.07 16 13 C -0.61 -15.27 9.05 -34.44 -0.31 -15.58 16 14 H 0.07 1.92 8.05 -52.49 -0.42 1.50 16 15 C 0.03 0.85 5.46 -17.82 -0.10 0.75 16 16 N -0.89 -24.50 13.70 55.43 0.76 -23.74 16 17 Si 1.04 21.06 24.74 -169.99 -4.21 16.86 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.09 5.63 56.52 0.32 -4.77 16 20 H -0.27 -4.89 6.29 56.52 0.36 -4.53 16 21 C 0.05 1.02 5.34 -2.85 -0.02 1.00 16 22 N -0.53 -8.69 8.04 -13.80 -0.11 -8.80 16 23 C 0.36 4.74 12.28 -92.23 -1.13 3.60 16 24 N -0.60 -7.60 9.38 -14.71 -0.14 -7.74 16 25 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.42 5.19 8.34 -40.82 -0.34 4.85 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 32 H 0.37 7.54 5.63 45.56 0.26 7.80 16 33 H 0.27 7.58 8.72 -40.82 -0.36 7.22 16 34 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 35 H 0.06 1.06 6.79 -51.93 -0.35 0.71 16 36 H 0.20 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 311.08 15.07 4.69 4.69 Total: -1.00 -32.06 311.08 -6.91 -38.96 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -3.51 Total: 13.87 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: -3.05 Total: 18.01 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.24 Total: -63.86 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.58 Total: -28.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.21 Total: 16.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.06 -6.91 -38.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338891431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.047 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds