Wall clock time and date at job start Tue Mar 31 2020 04:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99735 * 2 1 4 4 H 1.48501 * 109.46674 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47221 * 299.99426 * 3 2 1 6 6 H 1.48500 * 109.47289 * 59.99944 * 3 2 1 7 7 C 1.38816 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99176 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.46492 * 119.99902 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46827 * 59.99778 * 11 10 9 13 13 O 1.42894 * 109.46870 * 300.00219 * 11 10 9 14 14 C 1.52994 * 109.47537 * 179.97438 * 11 10 9 15 15 N 1.46495 * 109.47425 * 185.00098 * 14 11 10 16 16 C 1.34774 * 120.00289 * 179.97438 * 15 14 11 17 17 O 1.21694 * 119.99999 * 0.02562 * 16 15 14 18 18 C 1.46656 * 120.00360 * 179.97438 * 16 15 14 19 19 O 1.34942 * 126.00327 * 0.03368 * 18 16 15 20 20 C 1.33954 * 109.37664 * 179.97438 * 19 18 16 21 21 C 1.35145 * 108.75142 * 0.02562 * 20 19 18 22 22 C 1.36469 * 126.00859 * 179.97438 * 18 16 15 23 23 C 1.51072 * 143.67076 * 0.03237 * 22 18 16 24 24 C 1.54377 * 105.24220 * 197.15463 * 23 22 18 25 25 C 1.51140 * 143.44130 * 179.97438 * 21 20 19 26 26 H 0.96998 * 119.99945 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99618 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47356 * 59.99754 * 10 9 7 29 29 H 1.08999 * 109.47202 * 299.99911 * 10 9 7 30 30 H 0.96705 * 114.00248 * 299.99117 * 13 11 10 31 31 H 1.08999 * 109.46852 * 64.99711 * 14 11 10 32 32 H 1.09000 * 109.47220 * 305.00254 * 14 11 10 33 33 H 0.97003 * 119.99786 * 0.02562 * 15 14 11 34 34 H 1.07994 * 125.62301 * 180.25735 * 20 19 18 35 35 H 1.09003 * 110.29018 * 316.09506 * 23 22 18 36 36 H 1.09002 * 110.29614 * 78.11070 * 23 22 18 37 37 H 1.08995 * 110.76343 * 91.85657 * 24 23 22 38 38 H 1.09000 * 110.75791 * 215.04954 * 24 23 22 39 39 H 1.09000 * 110.29225 * 281.80118 * 25 21 20 40 40 H 1.08998 * 110.29123 * 43.90858 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8198 0.0021 12 1 0.4376 -4.7626 -0.8882 13 8 0.2419 -4.7432 1.1684 14 6 1.8288 -6.1447 0.0026 15 7 0.8814 -7.2557 -0.1174 16 6 1.3315 -8.5258 -0.1389 17 8 2.5249 -8.7500 -0.0581 18 6 0.3831 -9.6380 -0.2585 19 8 -0.9585 -9.5296 -0.3551 20 6 -1.4976 -10.7522 -0.4491 21 6 -0.5050 -11.6686 -0.4135 22 6 0.7022 -10.9644 -0.2927 23 6 1.8544 -11.9406 -0.2489 24 6 1.2826 -13.2680 -0.7912 25 6 -0.2204 -13.1524 -0.4559 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6841 -3.7141 0.8921 29 1 2.6854 -3.7149 -0.8878 30 1 0.7337 -4.7881 1.9999 31 1 2.3866 -6.2418 0.9340 32 1 2.5210 -6.1650 -0.8391 33 1 -0.0698 -7.0770 -0.1822 34 1 -2.5513 -10.9696 -0.5422 35 1 2.6691 -11.5925 -0.8840 36 1 2.2031 -12.0682 0.7759 37 1 1.4349 -13.3431 -1.8679 38 1 1.7305 -14.1195 -0.2789 39 1 -0.4294 -13.6052 0.5134 40 1 -0.8170 -13.6296 -1.2332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497025570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:16 Heat of formation + Delta-G solvation = -86.709206 kcal Electronic energy + Delta-G solvation = -22695.729179 eV Core-core repulsion = 19090.242741 eV Total energy + Delta-G solvation = -3605.486438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.89723 -40.71880 -38.96227 -38.26501 -36.10515 -35.40653 -33.22181 -31.82061 -31.58670 -30.52432 -28.29357 -26.96705 -24.88608 -23.82385 -22.81993 -22.62183 -21.30107 -20.74523 -19.26250 -18.77222 -17.77739 -17.65466 -17.22488 -16.97188 -16.51365 -16.38775 -16.00766 -15.66246 -15.52827 -15.06492 -14.98831 -14.78044 -14.21770 -14.01261 -13.88103 -13.67150 -13.29515 -12.96594 -12.79328 -12.68602 -12.65044 -12.13861 -12.08916 -12.07031 -11.98844 -11.83188 -11.59174 -11.02671 -10.94779 -10.42035 -10.22701 -9.57661 -9.02347 -7.95800 -5.25545 -0.03543 1.29198 1.47323 1.48279 1.58315 1.60413 2.00947 2.14268 2.55422 3.02975 3.34934 3.43473 3.53894 3.68701 3.82089 3.99155 4.11657 4.15225 4.16804 4.18659 4.37133 4.51621 4.57919 4.67034 4.78225 4.81385 4.91808 4.93922 5.00411 5.08054 5.13700 5.18340 5.20866 5.32266 5.42241 5.47757 5.78306 6.25384 6.34779 6.76326 6.92103 7.32481 8.07537 8.30751 9.27671 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.002388 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.671462 B =11720.745276 C =12171.964096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.108 3.892 12 H 0.101 0.899 13 O -0.563 6.563 14 C 0.101 3.899 15 N -0.703 5.703 16 C 0.600 3.400 17 O -0.558 6.558 18 C -0.099 4.099 19 O -0.164 6.164 20 C 0.024 3.976 21 C -0.232 4.232 22 C -0.120 4.120 23 C -0.062 4.062 24 C -0.113 4.113 25 C -0.043 4.043 26 H 0.251 0.749 27 H 0.377 0.623 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.385 0.615 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.253 0.747 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -30.110 -0.758 30.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.384 5.384 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.119 0.881 13 O -0.370 6.370 14 C -0.023 4.023 15 N -0.353 5.353 16 C 0.388 3.612 17 O -0.439 6.439 18 C -0.150 4.150 19 O -0.061 6.061 20 C -0.045 4.045 21 C -0.233 4.233 22 C -0.123 4.123 23 C -0.099 4.099 24 C -0.150 4.150 25 C -0.080 4.080 26 H 0.060 0.940 27 H 0.209 0.791 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.234 0.766 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.269 0.731 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.560 -29.813 -1.139 29.875 hybrid contribution 0.078 1.378 0.359 1.426 sum -1.481 -28.435 -0.780 28.484 Atomic orbital electron populations 1.69849 1.06682 1.26041 1.59325 1.25627 0.96435 1.01277 1.03638 0.85038 0.78214 0.79609 0.76662 1.18946 1.22001 1.22020 1.19685 0.91549 0.85266 1.41344 0.90463 1.42424 1.05810 1.00756 1.89366 1.21390 0.94130 0.85584 0.99358 1.22100 0.92327 0.91190 0.89618 0.88141 1.86564 1.37614 1.96387 1.16432 1.21988 0.91910 0.84707 1.03696 1.45742 1.11916 1.04698 1.72989 1.16733 0.86242 0.81699 0.76538 1.90837 1.15714 1.84550 1.52774 1.20919 0.81817 0.94343 1.17965 1.84191 1.18343 1.32468 1.71057 1.24321 1.00416 0.79274 1.00472 1.21806 0.92350 0.99615 1.09539 1.21706 1.00088 0.91609 0.98866 1.20715 0.94217 0.92540 1.02438 1.22428 0.94537 0.96018 1.01997 1.20549 0.96494 0.87406 1.03569 0.93989 0.79082 0.94894 0.94627 0.76563 0.90169 0.89868 0.74843 0.73087 0.91338 0.89634 0.90458 0.88002 0.88971 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.46 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -37.65 5.49 -343.47 -1.89 -39.53 16 10 C 0.12 4.67 5.92 86.38 0.51 5.18 16 11 C 0.11 3.28 3.08 30.59 0.09 3.37 16 12 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 13 O -0.56 -17.92 13.03 -148.98 -1.94 -19.86 16 14 C 0.10 2.65 5.31 86.38 0.46 3.11 16 15 N -0.70 -18.06 5.50 -467.13 -2.57 -20.63 16 16 C 0.60 17.35 7.79 86.44 0.67 18.02 16 17 O -0.56 -19.18 16.87 -4.33 -0.07 -19.25 16 18 C -0.10 -2.53 7.13 24.06 0.17 -2.36 16 19 O -0.16 -3.50 10.40 -5.55 -0.06 -3.56 16 20 C 0.02 0.35 12.08 67.11 0.81 1.16 16 21 C -0.23 -3.80 6.93 -19.94 -0.14 -3.94 16 22 C -0.12 -2.69 6.66 -19.66 -0.13 -2.82 16 23 C -0.06 -1.13 6.76 30.43 0.21 -0.93 16 24 C -0.11 -1.21 7.06 31.55 0.22 -0.99 16 25 C -0.04 -0.43 6.76 30.47 0.21 -0.23 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.38 20.80 7.54 -92.71 -0.70 20.10 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.39 10.13 9.05 -74.05 -0.67 9.46 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.41 9.82 8.23 -92.71 -0.76 9.06 16 34 H 0.25 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -74.73 344.76 -0.87 -75.60 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -1.04 Total: 36.06 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.39 Total: 2.56 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.17 Total: -120.01 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -2.07 Total: -42.67 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.73 -0.87 -75.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497025570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.108 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds