Wall clock time and date at job start Tue Mar 31 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47109 * 275.15835 * 3 2 1 5 5 H 1.48500 * 109.47134 * 35.15377 * 3 2 1 6 6 H 1.48493 * 109.47264 * 155.15269 * 3 2 1 7 7 C 1.38947 * 119.99922 * 179.72717 * 2 1 3 8 8 H 1.08005 * 120.00164 * 346.46875 * 7 2 1 9 9 N 1.37095 * 120.00244 * 166.46924 * 7 2 1 10 10 C 1.46499 * 120.00299 * 130.98359 * 9 7 2 11 11 C 1.50701 * 109.46736 * 97.00011 * 10 9 7 12 12 O 1.20827 * 120.00532 * 359.56973 * 11 10 9 13 13 O 1.34237 * 119.99785 * 179.56831 * 11 10 9 14 14 C 1.34781 * 120.00005 * 310.98627 * 9 7 2 15 15 O 1.21297 * 119.99458 * 5.64268 * 14 9 7 16 16 C 1.50694 * 119.99961 * 185.63653 * 14 9 7 17 17 H 1.08993 * 109.71642 * 36.20021 * 16 14 9 18 18 C 1.53427 * 109.71459 * 156.80056 * 16 14 9 19 19 C 1.53141 * 109.26253 * 168.29799 * 18 16 14 20 20 C 1.53303 * 109.54507 * 290.90723 * 19 18 16 21 21 N 1.46308 * 108.76759 * 50.11096 * 20 19 18 22 22 N 1.39755 * 128.30867 * 162.91199 * 21 20 19 23 23 C 1.30967 * 106.58275 * 180.14181 * 22 21 20 24 24 N 1.33476 * 109.00745 * 359.96416 * 23 22 21 25 25 C 1.30327 * 109.72530 * 359.97073 * 24 23 22 26 26 H 0.96996 * 120.00341 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47200 * 216.99933 * 10 9 7 28 28 H 1.09000 * 109.47144 * 337.00179 * 10 9 7 29 29 H 0.96695 * 117.00162 * 179.97438 * 13 11 10 30 30 H 1.08997 * 109.51210 * 288.29352 * 18 16 14 31 31 H 1.08999 * 109.50673 * 48.42500 * 18 16 14 32 32 H 1.09001 * 109.46723 * 170.86819 * 19 18 16 33 33 H 1.09003 * 109.41872 * 50.91657 * 19 18 16 34 34 H 1.09003 * 109.58561 * 290.32676 * 20 19 18 35 35 H 1.08994 * 109.59240 * 169.89473 * 20 19 18 36 36 H 1.08005 * 125.49901 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3866 2.1093 -1.3944 5 1 1.5043 2.6187 0.8061 6 1 3.5958 1.4112 0.5883 7 6 2.0089 -1.2033 0.0057 8 1 1.4913 -2.1246 0.2290 9 7 3.3513 -1.2212 -0.2720 10 6 4.2726 -1.9401 0.6115 11 6 4.5467 -3.3092 0.0445 12 8 4.0199 -3.6524 -0.9873 13 8 5.3763 -4.1474 0.6857 14 6 3.8235 -0.5773 -1.3578 15 8 3.0781 0.1021 -2.0317 16 6 5.2773 -0.7014 -1.7344 17 1 5.6283 -1.7103 -1.5182 18 6 5.4522 -0.4017 -3.2289 19 6 6.9429 -0.2421 -3.5411 20 6 7.4671 1.0458 -2.8956 21 7 7.0609 1.0671 -1.4902 22 7 7.5703 1.8530 -0.4529 23 6 6.9030 1.5265 0.6257 24 7 6.0096 0.5846 0.3158 25 6 6.0929 0.2998 -0.9533 26 1 -0.4850 0.8400 0.0004 27 1 5.2077 -1.3855 0.6902 28 1 3.8247 -2.0393 1.6003 29 1 5.5208 -5.0149 0.2837 30 1 5.0427 -1.2241 -3.8155 31 1 4.9282 0.5208 -3.4789 32 1 7.0846 -0.1910 -4.6207 33 1 7.4901 -1.0967 -3.1431 34 1 7.0470 1.9098 -3.4105 35 1 8.5547 1.0715 -2.9619 36 1 7.0516 1.9511 1.6076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:57 Heat of formation + Delta-G solvation = -10.514675 kcal Electronic energy + Delta-G solvation = -25300.216604 eV Core-core repulsion = 21594.493866 eV Total energy + Delta-G solvation = -3705.722739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29814 -40.05464 -38.83989 -36.71947 -35.76993 -34.50300 -33.23505 -31.93965 -30.52241 -29.63907 -27.95417 -25.73834 -23.73979 -22.83094 -21.89482 -21.63656 -19.84650 -18.86764 -17.80640 -17.64853 -16.68577 -16.58980 -15.96901 -15.63219 -15.47456 -15.02757 -14.89163 -14.72559 -14.09055 -13.81137 -13.45061 -13.03295 -12.83456 -12.53528 -12.24474 -12.16977 -12.13485 -11.70210 -11.43601 -11.20130 -11.09442 -10.95664 -10.87870 -10.26555 -10.14229 -10.05800 -9.72959 -9.50290 -9.42586 -8.69500 -8.54409 -7.72830 -6.17899 -4.06928 1.67541 2.30560 2.62373 3.01477 3.12431 3.43555 3.66550 3.68298 3.78643 4.16160 4.19673 4.29607 4.58594 4.60524 4.65571 4.95245 5.04778 5.10015 5.20679 5.24926 5.39332 5.47741 5.61711 5.69116 5.72811 5.83545 5.93090 6.09348 6.23070 6.41566 6.55980 6.79290 6.83178 7.80457 7.90703 8.22605 8.29057 8.67746 8.78183 9.37589 9.65330 10.86208 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.009056 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.571666 B = 3091.270878 C = 3924.133885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.095 3.905 3 Si 0.899 3.101 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.246 1.246 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.433 5.433 10 C 0.104 3.896 11 C 0.449 3.551 12 O -0.501 6.501 13 O -0.524 6.524 14 C 0.484 3.516 15 O -0.528 6.528 16 C -0.032 4.032 17 H 0.107 0.893 18 C -0.113 4.113 19 C -0.136 4.136 20 C 0.127 3.873 21 N -0.374 5.374 22 N -0.323 5.323 23 C 0.198 3.802 24 N -0.524 5.524 25 C 0.290 3.710 26 H 0.273 0.727 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.400 0.600 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.292 -2.247 -2.353 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.115 4.115 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.241 1.241 6 H -0.169 1.169 7 C -0.473 4.473 8 H 0.113 0.887 9 N -0.154 5.154 10 C -0.022 4.022 11 C 0.289 3.711 12 O -0.387 6.387 13 O -0.335 6.335 14 C 0.272 3.728 15 O -0.408 6.408 16 C -0.057 4.057 17 H 0.125 0.875 18 C -0.151 4.151 19 C -0.174 4.174 20 C 0.005 3.995 21 N -0.166 5.166 22 N -0.151 5.151 23 C -0.105 4.105 24 N -0.251 5.251 25 C 0.013 3.987 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.257 0.743 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 16.895 -1.105 -2.658 17.138 hybrid contribution 0.370 0.068 -0.307 0.486 sum 17.265 -1.037 -2.966 17.548 Atomic orbital electron populations 1.69710 1.06842 1.28257 1.45364 1.25342 0.94944 0.99513 0.91673 0.86426 0.81117 0.81584 0.78070 1.19326 1.24080 1.16921 1.18807 0.80242 0.95493 1.52715 0.88743 1.43086 1.07035 1.45640 1.19608 1.21447 0.98422 0.85964 0.96347 1.25005 0.74820 0.88420 0.82826 1.90730 1.47541 1.76399 1.24060 1.84596 1.62859 1.29737 1.56348 1.19649 0.87191 0.84455 0.81509 1.90537 1.57843 1.40427 1.51995 1.20288 0.94378 0.96096 0.94931 0.87500 1.21606 0.95240 1.05466 0.92818 1.22032 0.96896 0.96386 1.02108 1.21906 1.01516 1.00231 0.75828 1.50251 1.27610 1.29429 1.09280 1.77876 1.23946 1.17481 0.95756 1.26079 0.91286 0.94387 0.98710 1.70317 1.24349 1.18654 1.11817 1.23904 0.90388 0.94474 0.89892 0.91759 0.86111 0.85820 0.74261 0.88866 0.89174 0.88171 0.90516 0.89321 0.88631 0.76596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.75 13.96 55.50 0.77 -25.98 16 2 C 0.09 2.81 4.99 -17.47 -0.09 2.72 16 3 Si 0.90 24.30 24.69 -169.99 -4.20 20.10 16 4 H -0.27 -7.70 6.45 56.52 0.36 -7.33 16 5 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 6 H -0.25 -6.27 6.32 56.52 0.36 -5.91 16 7 C -0.35 -9.85 9.61 -14.94 -0.14 -9.99 16 8 H 0.10 2.85 8.06 -52.48 -0.42 2.43 16 9 N -0.43 -10.40 1.63 -116.10 -0.19 -10.59 16 10 C 0.10 1.98 5.66 -5.19 -0.03 1.95 16 11 C 0.45 7.82 7.07 36.01 0.25 8.07 16 12 O -0.50 -10.39 16.81 -18.75 -0.32 -10.70 16 13 O -0.52 -6.81 13.42 -39.28 -0.53 -7.34 16 14 C 0.48 11.44 4.86 -10.99 -0.05 11.38 16 15 O -0.53 -14.42 11.46 5.54 0.06 -14.36 16 16 C -0.03 -0.58 2.10 -92.60 -0.19 -0.78 16 17 H 0.11 1.76 6.06 -51.93 -0.31 1.45 16 18 C -0.11 -1.65 5.02 -26.44 -0.13 -1.78 16 19 C -0.14 -1.33 5.94 -26.50 -0.16 -1.49 16 20 C 0.13 1.39 7.30 -3.99 -0.03 1.36 16 21 N -0.37 -5.83 4.04 -58.29 -0.24 -6.06 16 22 N -0.32 -5.19 12.74 29.38 0.37 -4.81 16 23 C 0.20 3.11 13.04 -91.39 -1.19 1.92 16 24 N -0.52 -9.63 8.33 -11.83 -0.10 -9.73 16 25 C 0.29 5.15 6.65 -155.78 -1.04 4.11 16 26 H 0.27 7.94 8.31 -40.82 -0.34 7.60 16 27 H 0.12 2.14 4.82 -51.93 -0.25 1.89 16 28 H 0.12 2.21 7.99 -51.93 -0.41 1.79 16 29 H 0.40 3.36 9.10 45.56 0.41 3.78 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.49 7.44 -51.93 -0.39 1.10 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.22 2.49 8.06 -52.48 -0.42 2.06 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -38.54 299.70 -5.76 -44.30 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.13 Total: 3.17 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: -2.80 Total: 17.49 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.63 Total: -57.17 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.78 Total: -32.40 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -4.20 Total: 20.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -38.54 -5.76 -44.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.782 kcal (2) G-P(sol) polarization free energy of solvation -38.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds