Wall clock time and date at job start Tue Mar 31 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31204 * 1 3 3 Si 1.86797 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47379 * 275.00344 * 3 2 1 5 5 H 1.48504 * 109.47116 * 35.00536 * 3 2 1 6 6 H 1.48504 * 109.46961 * 155.00060 * 3 2 1 7 7 C 1.39297 * 119.99380 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99571 * 214.64503 * 7 2 1 9 9 N 1.36479 * 120.00590 * 34.65513 * 7 2 1 10 10 C 1.46503 * 119.99762 * 5.71522 * 9 7 2 11 11 C 1.50696 * 109.47353 * 262.85400 * 10 9 7 12 12 O 1.20823 * 120.00240 * 359.97438 * 11 10 9 13 13 O 1.34228 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00297 * 185.72621 * 9 7 2 15 15 O 1.21637 * 119.99556 * 0.34098 * 14 9 7 16 16 C 1.47579 * 119.99819 * 180.34143 * 14 9 7 17 17 C 1.34056 * 125.58582 * 170.54838 * 16 14 9 18 18 C 1.50978 * 130.84255 * 0.82461 * 17 16 14 19 19 C 1.53839 * 106.41846 * 156.09222 * 18 17 16 20 20 C 1.52649 * 110.20539 * 53.13577 * 19 18 17 21 21 N 1.46660 * 111.70867 * 298.94848 * 20 19 18 22 22 C 1.30466 * 119.15593 * 33.88203 * 21 20 19 23 23 N 1.37158 * 131.34788 * 176.45531 * 22 21 20 24 24 N 1.38729 * 125.59013 * 350.52954 * 16 14 9 25 25 H 0.97001 * 119.99992 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46966 * 22.85925 * 10 9 7 27 27 H 1.09005 * 109.46953 * 142.84716 * 10 9 7 28 28 H 0.96698 * 117.00308 * 179.97438 * 13 11 10 29 29 H 1.09000 * 110.05574 * 275.31408 * 18 17 16 30 30 H 1.08999 * 110.06155 * 36.85765 * 18 17 16 31 31 H 1.08994 * 109.35239 * 173.36363 * 19 18 17 32 32 H 1.09005 * 109.34684 * 292.91959 * 19 18 17 33 33 H 1.08989 * 109.03826 * 178.37057 * 20 19 18 34 34 H 1.08995 * 108.96284 * 59.47734 * 20 19 18 35 35 H 0.96998 * 126.20210 * 2.53568 * 23 22 21 36 36 H 0.97000 * 125.33694 * 0.24558 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2461 1.6177 0.0000 4 1 2.3879 2.1075 -1.3947 5 1 1.5004 2.6198 0.8032 6 1 3.5925 1.4118 0.5917 7 6 2.0084 -1.2064 -0.0005 8 1 2.9449 -1.2896 0.5312 9 7 1.5076 -2.2832 -0.6731 10 6 0.3047 -2.1378 -1.4966 11 6 -0.9005 -2.5819 -0.7085 12 8 -0.7683 -2.9796 0.4248 13 8 -2.1208 -2.5366 -1.2658 14 6 2.1195 -3.4805 -0.5794 15 8 3.1145 -3.6027 0.1095 16 6 1.5822 -4.6431 -1.3127 17 6 2.1905 -5.8302 -1.4464 18 6 3.5133 -6.3272 -0.9147 19 6 3.4092 -7.8609 -0.8548 20 6 2.9755 -8.4133 -2.2101 21 7 1.6575 -7.9064 -2.6059 22 6 1.3135 -6.6951 -2.2646 23 7 0.1930 -5.9570 -2.5494 24 7 0.3647 -4.6867 -1.9764 25 1 -0.4850 0.8400 0.0004 26 1 0.1858 -1.0933 -1.7848 27 1 0.4005 -2.7528 -2.3915 28 1 -2.8633 -2.8321 -0.7214 29 1 4.3202 -6.0332 -1.5860 30 1 3.6902 -5.9251 0.0828 31 1 4.3801 -8.2786 -0.5885 32 1 2.6770 -8.1439 -0.0985 33 1 2.9361 -9.5010 -2.1546 34 1 3.7088 -8.1223 -2.9623 35 1 -0.5779 -6.2580 -3.0552 36 1 -0.2688 -3.9546 -2.0350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:13 Heat of formation + Delta-G solvation = -10.430786 kcal Electronic energy + Delta-G solvation = -24749.491049 eV Core-core repulsion = 21043.771948 eV Total energy + Delta-G solvation = -3705.719101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.50757 -41.14533 -39.92893 -37.79000 -37.25008 -36.69465 -34.35291 -33.72826 -31.45127 -31.18049 -29.74032 -27.57279 -26.06428 -24.27963 -23.49236 -23.04381 -20.68670 -19.92735 -19.52425 -19.14082 -18.93738 -17.97204 -17.63254 -16.98882 -16.68180 -16.48364 -16.22084 -15.93027 -15.68020 -15.13446 -14.83746 -14.62169 -14.21247 -14.03287 -13.96720 -13.75280 -13.60570 -13.01078 -12.79875 -12.47468 -12.41883 -12.37109 -12.14865 -11.97995 -11.83810 -11.47514 -11.08883 -10.90171 -10.28585 -10.14924 -9.81090 -8.70804 -8.12678 -5.98274 0.08260 0.69906 1.29402 1.36985 1.46779 1.57727 1.70514 1.97079 2.20707 2.33388 2.59808 2.79674 2.94235 3.36383 3.69783 3.80594 4.06623 4.18537 4.28980 4.36489 4.41999 4.52830 4.76137 4.82568 4.89386 5.06491 5.17630 5.25445 5.35071 5.36057 5.55334 5.64704 5.83708 6.13752 6.25305 6.67610 6.87947 7.00003 7.12207 7.32214 7.66328 8.37308 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.005754 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.122449 B = 4865.119467 C = 5804.866867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.018 3.982 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.411 5.411 10 C 0.105 3.895 11 C 0.475 3.525 12 O -0.530 6.530 13 O -0.509 6.509 14 C 0.485 3.515 15 O -0.587 6.587 16 C 0.136 3.864 17 C -0.242 4.242 18 C -0.036 4.036 19 C -0.136 4.136 20 C 0.076 3.924 21 N -0.634 5.634 22 C 0.421 3.579 23 N -0.487 5.487 24 N -0.521 5.521 25 H 0.287 0.713 26 H 0.147 0.853 27 H 0.124 0.876 28 H 0.423 0.577 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.459 0.541 36 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -4.941 -8.033 10.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.111 0.889 9 N -0.127 5.127 10 C -0.022 4.022 11 C 0.316 3.684 12 O -0.418 6.418 13 O -0.323 6.323 14 C 0.274 3.726 15 O -0.472 6.472 16 C 0.022 3.978 17 C -0.260 4.260 18 C -0.075 4.075 19 C -0.175 4.175 20 C -0.054 4.054 21 N -0.369 5.369 22 C 0.146 3.854 23 N -0.225 5.225 24 N -0.259 5.259 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.141 0.859 28 H 0.284 0.716 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.310 0.690 36 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -3.333 -5.489 -8.117 10.350 hybrid contribution -0.690 1.467 1.171 2.000 sum -4.023 -4.022 -6.946 8.979 Atomic orbital electron populations 1.70017 1.07424 1.30359 1.41776 1.26041 0.95706 1.02453 0.94645 0.85021 0.78435 0.76166 0.79353 1.18012 1.20293 1.19901 1.19709 1.06776 0.87644 1.34360 0.88929 1.43508 1.21079 1.08069 1.40073 1.21605 0.81210 1.07287 0.92053 1.23803 0.85166 0.73070 0.86364 1.90705 1.86626 1.43949 1.20489 1.84448 1.17324 1.80457 1.50031 1.17355 0.87585 0.81420 0.86192 1.90623 1.28836 1.82905 1.44829 1.19956 0.86699 0.96108 0.95008 1.21775 1.01742 0.93643 1.08799 1.20133 0.91279 0.95435 1.00615 1.21978 1.02914 0.94195 0.98411 1.21825 0.88757 1.00089 0.94741 1.72220 1.19754 1.09687 1.35198 1.19964 0.85210 0.89852 0.90326 1.42968 1.20207 1.02458 1.56827 1.45510 1.19816 1.05156 1.55460 0.90282 0.83567 0.85936 0.71568 0.90556 0.91622 0.88439 0.93141 0.88863 0.92023 0.69021 0.70189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -39.76 10.15 21.72 0.22 -39.54 16 2 C 0.02 0.86 4.65 85.04 0.40 1.25 16 3 Si 0.99 37.34 29.67 68.60 2.04 39.37 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 5 H -0.28 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.36 -18.73 9.36 84.22 0.79 -17.94 16 8 H 0.09 5.28 7.36 -2.90 -0.02 5.26 16 9 N -0.41 -19.80 2.18 -643.23 -1.40 -21.20 16 10 C 0.10 4.07 4.76 85.63 0.41 4.47 16 11 C 0.48 18.14 4.75 71.23 0.34 18.47 16 12 O -0.53 -25.28 17.01 21.97 0.37 -24.91 16 13 O -0.51 -13.86 13.36 -51.40 -0.69 -14.54 16 14 C 0.48 23.99 7.35 86.71 0.64 24.62 16 15 O -0.59 -32.63 14.90 -4.15 -0.06 -32.69 16 16 C 0.14 5.62 6.58 39.56 0.26 5.88 16 17 C -0.24 -9.44 6.06 -18.18 -0.11 -9.55 16 18 C -0.04 -1.30 5.84 30.22 0.18 -1.13 16 19 C -0.14 -3.93 5.96 30.76 0.18 -3.75 16 20 C 0.08 2.14 6.93 86.23 0.60 2.74 16 21 N -0.63 -21.06 11.07 -339.74 -3.76 -24.82 16 22 C 0.42 14.52 8.35 136.59 1.14 15.66 16 23 N -0.49 -14.15 7.49 -51.56 -0.39 -14.53 16 24 N -0.52 -17.29 6.11 -48.95 -0.30 -17.59 16 25 H 0.29 12.19 8.30 -92.71 -0.77 11.42 16 26 H 0.15 5.71 5.91 -2.39 -0.01 5.70 16 27 H 0.12 3.89 5.19 -2.38 -0.01 3.88 16 28 H 0.42 8.02 9.10 -74.06 -0.67 7.34 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 2.65 7.10 -2.39 -0.02 2.64 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.46 9.64 8.96 -213.12 -1.91 7.73 16 36 H 0.44 13.37 3.44 -213.12 -0.73 12.63 16 Total: -1.00 -69.58 299.90 -1.28 -70.86 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -2.13 Total: 38.86 kcal Atomic # 6 Polarization: 35.92 SS G_CDS: 4.81 Total: 40.73 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -5.63 Total: -117.68 kcal Atomic # 8 Polarization: -71.77 SS G_CDS: -0.37 Total: -72.14 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.04 Total: 39.37 kcal Total: -69.58 -1.28 -70.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.427 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds