Wall clock time and date at job start Tue Mar 31 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47087 * 2 1 4 4 C 1.37101 * 119.99610 * 264.74320 * 3 2 1 5 5 H 1.08001 * 119.99593 * 146.16425 * 4 3 2 6 6 C 1.38945 * 120.00230 * 326.16732 * 4 3 2 7 7 N 1.31414 * 120.00185 * 337.69898 * 6 4 3 8 8 Si 1.86804 * 120.00190 * 157.70073 * 6 4 3 9 9 H 1.48499 * 109.46874 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46980 * 119.99664 * 8 6 4 11 11 H 1.48500 * 109.47297 * 239.99908 * 8 6 4 12 12 C 1.34773 * 120.00537 * 84.74385 * 3 2 1 13 13 O 1.21290 * 120.00298 * 179.72322 * 12 3 2 14 14 C 1.50702 * 119.99597 * 0.02562 * 12 3 2 15 15 C 1.52995 * 109.46952 * 179.72307 * 14 12 3 16 16 N 1.46506 * 109.47332 * 179.97438 * 15 14 12 17 17 C 1.35890 * 119.46234 * 90.00037 * 16 15 14 18 18 C 1.50699 * 119.56465 * 0.02562 * 17 16 15 19 19 C 1.35030 * 120.88117 * 180.02562 * 17 16 15 20 20 C 1.40915 * 119.80652 * 0.02562 * 19 17 16 21 21 O 1.35454 * 120.50888 * 179.97438 * 20 19 17 22 22 C 1.38253 * 118.97953 * 359.97438 * 20 19 17 23 23 C 1.34592 * 119.46709 * 269.73119 * 16 15 14 24 24 O 1.22115 * 119.93248 * 0.02562 * 23 16 15 25 25 H 1.08997 * 109.46548 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47198 * 300.00518 * 1 2 3 27 27 H 1.09005 * 109.46913 * 60.00940 * 1 2 3 28 28 H 1.08998 * 109.47588 * 239.99379 * 2 1 3 29 29 H 1.09005 * 109.46913 * 119.99060 * 2 1 3 30 30 H 0.96996 * 120.00398 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46801 * 299.72121 * 14 12 3 32 32 H 1.09000 * 109.47678 * 59.71958 * 14 12 3 33 33 H 1.08998 * 109.47496 * 299.99734 * 15 14 12 34 34 H 1.09003 * 109.47592 * 60.00018 * 15 14 12 35 35 H 1.09004 * 109.47210 * 89.99751 * 18 17 16 36 36 H 1.08998 * 109.47888 * 210.00450 * 18 17 16 37 37 H 1.09000 * 109.47108 * 330.00575 * 18 17 16 38 38 H 1.08000 * 120.09219 * 180.02562 * 19 17 16 39 39 H 0.96705 * 113.99449 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.44201 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9912 -1.1824 5 1 2.1815 3.0506 -1.3090 6 6 2.9007 1.2466 -2.2178 7 7 3.5049 0.1085 -1.9594 8 14 2.7831 1.8630 -3.9772 9 1 2.0601 3.1599 -4.0000 10 1 4.1493 2.0488 -4.5290 11 1 2.0471 0.8708 -4.8013 12 6 2.1422 2.0523 1.1622 13 8 2.5512 3.1942 1.1626 14 6 1.7788 1.3816 2.4619 15 6 2.0162 2.3522 3.6205 16 7 1.6625 1.7005 4.8840 17 6 2.6105 1.0057 5.5660 18 6 4.0095 0.9172 5.0128 19 6 2.3157 0.3935 6.7329 20 6 1.0092 0.4724 7.2548 21 8 0.6977 -0.1367 8.4239 22 6 0.0501 1.1810 6.5552 23 6 0.4052 1.8041 5.3531 24 8 -0.4291 2.4374 4.7254 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8895 -0.4115 -2.6822 31 1 0.7282 1.0920 2.4400 32 1 2.3974 0.4946 2.5985 33 1 3.0668 2.6419 3.6424 34 1 1.3976 3.2393 3.4840 35 1 4.6033 1.7490 5.3917 36 1 4.4637 -0.0241 5.3220 37 1 3.9733 0.9629 3.9244 38 1 3.0792 -0.1549 7.2646 39 1 -0.2237 -0.0218 8.6940 40 1 -0.9586 1.2571 6.9337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275719181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:07 Heat of formation + Delta-G solvation = -105.724742 kcal Electronic energy + Delta-G solvation = -24058.439328 eV Core-core repulsion = 20452.128315 eV Total energy + Delta-G solvation = -3606.311013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60417 -40.52035 -39.45475 -38.15807 -37.02563 -35.03988 -34.01176 -32.60079 -31.56482 -31.17748 -28.40414 -27.43689 -25.52378 -23.96889 -23.76089 -23.01008 -20.66896 -19.69520 -18.91516 -18.49246 -18.27913 -17.36045 -17.01481 -16.81681 -16.53393 -16.21920 -15.94166 -15.19140 -15.00188 -14.79712 -14.66317 -14.57382 -14.37082 -14.32528 -13.98466 -13.70641 -13.51515 -13.43691 -12.99647 -12.87859 -12.71299 -12.67163 -12.38259 -12.18763 -12.08244 -11.96200 -11.80523 -11.15641 -10.92378 -10.47785 -10.18271 -9.50660 -9.02204 -8.36867 -6.05769 -0.12905 0.86790 1.34912 1.41801 1.53012 1.57826 1.97579 2.28997 2.57497 2.68907 2.97841 3.05747 3.49581 3.64326 3.80242 3.95955 4.02195 4.07989 4.17234 4.23049 4.36956 4.45509 4.54861 4.62479 4.66819 4.71181 4.83918 4.90659 4.97614 5.05711 5.08741 5.14915 5.25072 5.43992 5.51358 5.53542 6.13732 6.17850 6.48997 6.53995 7.02216 7.14509 7.43081 8.01466 8.65593 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.003708 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.798650 B = 7549.641508 C = 7694.298514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 N -0.448 5.448 4 C -0.345 4.345 5 H 0.062 0.938 6 C 0.009 3.991 7 N -0.882 5.882 8 Si 0.978 3.022 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.263 1.263 12 C 0.448 3.552 13 O -0.626 6.626 14 C -0.127 4.127 15 C 0.117 3.883 16 N -0.501 5.501 17 C 0.197 3.803 18 C -0.135 4.135 19 C -0.248 4.248 20 C 0.266 3.734 21 O -0.459 6.459 22 C -0.393 4.393 23 C 0.513 3.487 24 O -0.613 6.613 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.276 0.724 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.185 0.815 39 H 0.428 0.572 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -7.665 17.689 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.166 5.166 4 C -0.473 4.473 5 H 0.080 0.920 6 C -0.194 4.194 7 N -0.520 5.520 8 Si 0.802 3.198 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.188 1.188 12 C 0.237 3.763 13 O -0.514 6.514 14 C -0.168 4.168 15 C -0.005 4.005 16 N -0.212 5.212 17 C 0.088 3.912 18 C -0.192 4.192 19 C -0.270 4.270 20 C 0.212 3.788 21 O -0.263 6.263 22 C -0.416 4.416 23 C 0.320 3.680 24 O -0.502 6.502 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.203 0.797 39 H 0.285 0.715 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.061 -7.086 17.197 18.600 hybrid contribution -0.986 0.698 -0.986 1.559 sum -1.046 -6.389 16.211 17.456 Atomic orbital electron populations 1.22114 0.96032 1.02410 1.00847 1.21711 0.93514 0.83565 1.04086 1.43776 1.55219 1.13046 1.04603 1.19422 1.42078 0.94893 0.90888 0.91972 1.25992 0.93385 0.96526 1.03525 1.69960 1.32103 1.15695 1.34221 0.85122 0.78278 0.78600 0.77807 1.20000 1.20074 1.18809 1.20780 0.81953 0.87584 0.85956 1.90484 1.52583 1.20624 1.87711 1.21731 1.03521 0.99754 0.91764 1.21453 1.03343 0.95404 0.80307 1.45659 1.10816 1.43842 1.20875 1.20944 0.91981 0.87542 0.90772 1.21388 0.88463 1.07254 1.02059 1.20135 0.96576 1.12032 0.98296 1.19218 0.92510 0.83935 0.83119 1.84781 1.37824 1.69541 1.34125 1.22155 1.02845 1.16043 1.00558 1.17086 0.80812 0.82570 0.87490 1.90943 1.49252 1.47483 1.62504 0.89564 0.93885 0.93927 0.88642 0.91374 0.91467 0.89939 0.87301 0.86925 0.90946 0.87099 0.85486 0.91068 0.79742 0.71471 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 10.15 71.98 0.73 -5.05 16 2 C 0.09 4.07 5.44 86.38 0.47 4.54 16 3 N -0.45 -23.10 2.56 -635.53 -1.63 -24.73 16 4 C -0.34 -19.66 8.98 84.04 0.75 -18.91 16 5 H 0.06 3.84 7.70 -2.91 -0.02 3.82 16 6 C 0.01 0.46 4.92 84.92 0.42 0.88 16 7 N -0.88 -46.08 11.33 21.66 0.25 -45.84 16 8 Si 0.98 41.99 29.61 68.60 2.03 44.02 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 C 0.45 22.29 7.59 87.66 0.67 22.96 16 13 O -0.63 -35.76 15.81 -3.06 -0.05 -35.81 16 14 C -0.13 -4.77 4.44 29.85 0.13 -4.64 16 15 C 0.12 4.07 3.96 86.38 0.34 4.41 16 16 N -0.50 -14.67 2.59 -637.16 -1.65 -16.32 16 17 C 0.20 4.01 6.65 41.19 0.27 4.28 16 18 C -0.14 -1.98 9.04 71.24 0.64 -1.33 16 19 C -0.25 -4.12 9.57 22.19 0.21 -3.91 16 20 C 0.27 4.85 6.95 22.93 0.16 5.01 16 21 O -0.46 -5.45 13.58 -87.51 -1.19 -6.64 16 22 C -0.39 -9.75 9.71 22.70 0.22 -9.53 16 23 C 0.51 17.41 7.39 84.69 0.63 18.04 16 24 O -0.61 -26.94 16.61 -5.69 -0.09 -27.04 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.04 1.58 6.60 -2.39 -0.02 1.57 16 27 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 28 H 0.10 4.52 5.34 -2.39 -0.01 4.50 16 29 H 0.07 2.58 6.65 -2.38 -0.02 2.56 16 30 H 0.28 13.32 8.31 -92.71 -0.77 12.54 16 31 H 0.08 3.19 6.55 -2.38 -0.02 3.18 16 32 H 0.11 3.47 6.56 -2.39 -0.02 3.46 16 33 H 0.11 3.55 6.43 -2.39 -0.02 3.53 16 34 H 0.07 3.04 7.32 -2.39 -0.02 3.02 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.05 8.07 -2.39 -0.02 1.04 16 37 H 0.07 1.38 5.58 -2.39 -0.01 1.37 16 38 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.43 1.16 8.75 -74.05 -0.65 0.52 16 40 H 0.16 3.36 8.00 -2.91 -0.02 3.34 16 Total: -1.00 -79.65 332.53 3.75 -75.90 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.43 Total: 19.72 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 5.65 Total: 16.75 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -3.03 Total: -86.89 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -1.33 Total: -69.49 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -79.65 3.75 -75.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275719181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.828 kcal (2) G-P(sol) polarization free energy of solvation -79.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds