Wall clock time and date at job start Tue Mar 31 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.39511 * 119.99994 * 179.97438 * 13 11 10 15 15 C 1.36098 * 126.21386 * 359.69402 * 14 13 11 16 16 C 1.39766 * 107.82293 * 179.84227 * 15 14 13 17 17 N 1.30836 * 108.32120 * 0.41949 * 16 15 14 18 18 N 1.35244 * 126.21289 * 179.97438 * 14 13 11 19 19 C 1.46499 * 126.04819 * 0.03906 * 18 14 13 20 20 C 1.53008 * 109.47191 * 89.99907 * 19 18 14 21 21 H 1.09000 * 110.45328 * 52.39395 * 20 19 18 22 22 C 1.54502 * 110.51333 * 175.00074 * 20 19 18 23 23 C 1.54474 * 104.06150 * 118.64661 * 22 20 19 24 24 O 1.44418 * 104.80770 * 23.97676 * 23 22 20 25 25 C 1.44429 * 105.27328 * 319.48837 * 24 23 22 26 26 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 28 28 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 29 29 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 30 30 H 0.97005 * 120.00332 * 0.02562 * 13 11 10 31 31 H 1.08004 * 126.08574 * 359.97438 * 15 14 13 32 32 H 1.08008 * 125.83719 * 180.14334 * 16 15 14 33 33 H 1.09000 * 109.47003 * 209.99666 * 19 18 14 34 34 H 1.08998 * 109.47282 * 330.00356 * 19 18 14 35 35 H 1.09001 * 110.51208 * 237.29318 * 22 20 19 36 36 H 1.09004 * 110.51163 * 359.85994 * 22 20 19 37 37 H 1.09002 * 110.37086 * 142.81580 * 23 22 20 38 38 H 1.09010 * 110.36963 * 265.14602 * 23 22 20 39 39 H 1.08995 * 110.37504 * 281.67965 * 25 24 23 40 40 H 1.09002 * 110.36935 * 159.33859 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0078 11 6 1.7536 -4.8833 -0.0086 12 8 0.5582 -5.1055 -0.0037 13 7 2.6294 -5.9077 -0.0147 14 6 2.1643 -7.2230 -0.0150 15 6 0.8611 -7.6151 -0.0036 16 6 0.8347 -9.0125 -0.0121 17 7 2.0687 -9.4471 -0.0189 18 7 2.9267 -8.3401 -0.0212 19 6 4.3910 -8.3844 -0.0282 20 6 4.9076 -8.4033 1.4120 21 1 4.4253 -9.1994 1.9792 22 6 6.4428 -8.5760 1.4343 23 6 6.9550 -7.2911 2.1220 24 8 5.8404 -6.8273 2.9147 25 6 4.6739 -7.0344 2.0888 26 1 -0.4851 0.8401 0.0004 27 1 0.6283 -2.5592 0.8921 28 1 0.6202 -2.5546 -0.8878 29 1 3.1566 -3.4354 -0.0113 30 1 3.5831 -5.7305 -0.0182 31 1 0.0006 -6.9626 0.0077 32 1 -0.0527 -9.6282 -0.0088 33 1 4.7249 -9.2837 -0.5457 34 1 4.7788 -7.5046 -0.5416 35 1 6.7197 -9.4562 2.0146 36 1 6.8336 -8.6504 0.4195 37 1 7.8078 -7.5175 2.7621 38 1 7.2270 -6.5441 1.3762 39 1 4.5960 -6.2483 1.3379 40 1 3.7741 -7.0637 2.7034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332599896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:01 Heat of formation + Delta-G solvation = 12.002221 kcal Electronic energy + Delta-G solvation = -23723.706110 eV Core-core repulsion = 20154.792872 eV Total energy + Delta-G solvation = -3568.913238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48315 -39.69696 -39.25511 -35.01321 -34.62949 -34.12344 -32.41694 -31.51334 -29.42343 -28.87999 -27.01765 -26.07732 -23.34700 -23.14263 -21.63715 -21.20239 -20.44327 -19.89125 -18.52180 -17.75756 -16.70910 -16.20891 -15.96466 -15.74205 -15.36978 -15.19009 -14.80592 -14.54410 -14.19840 -14.15565 -13.48736 -13.27154 -13.22945 -12.98820 -12.49493 -12.24059 -12.05958 -12.04828 -11.71614 -11.37856 -11.07565 -11.05187 -10.97540 -10.69132 -10.60443 -10.31230 -10.13582 -9.49809 -9.46917 -8.92143 -8.82302 -8.17353 -7.71439 -6.21528 -4.29109 1.94547 2.12239 3.04584 3.05743 3.22514 3.28037 3.29348 3.59558 3.75278 4.08492 4.19934 4.26457 4.36525 4.52200 4.66638 4.68373 4.85486 4.96865 5.01881 5.14936 5.17395 5.27275 5.38554 5.45076 5.54798 5.55927 5.72534 5.76045 6.17509 6.34012 6.42094 6.81899 6.93219 7.19587 7.32178 7.39809 7.44968 7.66461 7.86829 7.93324 8.55809 8.73871 9.04230 9.37525 10.88466 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.003948 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.817766 B = 7091.318121 C = 8608.818314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.717 5.717 11 C 0.698 3.302 12 O -0.564 6.564 13 N -0.671 5.671 14 C 0.337 3.663 15 C -0.284 4.284 16 C 0.062 3.938 17 N -0.305 5.305 18 N -0.395 5.395 19 C 0.143 3.857 20 C -0.142 4.142 21 H 0.097 0.903 22 C -0.147 4.147 23 C 0.041 3.959 24 O -0.369 6.369 25 C 0.051 3.949 26 H 0.268 0.732 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.388 0.612 30 H 0.398 0.602 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -17.031 0.746 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.369 5.369 11 C 0.397 3.603 12 O -0.440 6.440 13 N -0.323 5.323 14 C 0.116 3.884 15 C -0.316 4.316 16 C -0.124 4.124 17 N -0.126 5.126 18 N -0.184 5.184 19 C 0.021 3.979 20 C -0.161 4.161 21 H 0.115 0.885 22 C -0.185 4.185 23 C -0.036 4.036 24 O -0.287 6.287 25 C -0.026 4.026 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.221 0.779 30 H 0.234 0.766 31 H 0.193 0.807 32 H 0.200 0.800 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.643 -17.869 0.948 21.910 hybrid contribution 0.953 1.731 -0.254 1.992 sum 13.597 -16.138 0.694 21.113 Atomic orbital electron populations 1.69958 1.06088 1.27565 1.48447 1.24924 0.94922 0.99402 0.94590 0.86456 0.79414 0.82241 0.78690 1.20078 1.21007 1.20034 1.21139 0.93246 0.90264 1.53801 0.91927 1.19112 0.87605 0.80606 0.98069 1.45770 1.11256 1.03712 1.76143 1.15888 0.84804 0.80644 0.78957 1.90836 1.13591 1.82945 1.56610 1.42396 1.09861 1.02158 1.77902 1.17745 0.90992 0.79556 1.00118 1.21733 0.95882 0.94947 1.19050 1.23759 0.95326 0.94865 0.98436 1.77383 1.00719 1.06446 1.28096 1.48514 1.05460 1.02383 1.62049 1.21662 0.75361 1.04457 0.96418 1.23064 0.96600 0.99943 0.96538 0.88487 1.22954 0.93653 0.99663 1.02261 1.23467 0.90796 0.94266 0.95068 1.89194 1.15703 1.84803 1.39037 1.23561 0.90177 0.94291 0.94535 0.92273 0.95256 0.95256 0.77912 0.76610 0.80663 0.79966 0.87968 0.89553 0.89968 0.89926 0.88820 0.91945 0.92719 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 13.29 55.43 0.74 -24.66 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 9 C 0.27 6.77 5.43 -5.19 -0.03 6.75 16 10 N -0.72 -14.27 5.55 -66.42 -0.37 -14.64 16 11 C 0.70 13.53 8.53 -86.92 -0.74 12.78 16 12 O -0.56 -13.02 13.47 5.29 0.07 -12.95 16 13 N -0.67 -9.88 4.96 -15.85 -0.08 -9.95 16 14 C 0.34 5.12 7.20 -153.14 -1.10 4.01 16 15 C -0.28 -4.68 9.65 -39.78 -0.38 -5.06 16 16 C 0.06 0.86 12.01 -17.41 -0.21 0.65 16 17 N -0.30 -4.30 12.56 30.60 0.38 -3.92 16 18 N -0.40 -5.08 3.56 -60.39 -0.21 -5.30 16 19 C 0.14 1.26 5.43 -4.04 -0.02 1.24 16 20 C -0.14 -1.22 3.35 -89.05 -0.30 -1.51 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C -0.15 -0.92 6.74 -25.17 -0.17 -1.09 16 23 C 0.04 0.31 7.63 37.93 0.29 0.60 16 24 O -0.37 -4.26 11.65 -35.23 -0.41 -4.67 16 25 C 0.05 0.55 6.49 37.93 0.25 0.79 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.39 6.49 8.34 -40.82 -0.34 6.15 16 30 H 0.40 4.51 5.84 -40.82 -0.24 4.27 16 31 H 0.18 3.29 5.82 -52.48 -0.31 2.99 16 32 H 0.18 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.62 7.32 -51.93 -0.38 0.24 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.36 7.73 -51.93 -0.40 -0.04 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 39 H 0.05 0.54 5.20 -51.93 -0.27 0.27 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -32.84 332.44 -8.00 -40.84 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.27 Total: 8.68 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -2.84 Total: 6.23 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.46 Total: -58.47 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.34 Total: -17.62 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.84 -8.00 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332599896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.840 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds