Wall clock time and date at job start Tue Mar 31 2020 03:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00033 * 2 1 4 4 H 1.09000 * 110.33081 * 330.69743 * 3 2 1 5 5 C 1.54664 * 110.36626 * 208.45340 * 3 2 1 6 6 C 1.53964 * 104.47484 * 242.73290 * 5 3 2 7 7 H 1.08997 * 112.88471 * 96.05924 * 6 5 3 8 8 C 1.50992 * 111.77944 * 223.95958 * 6 5 3 9 9 O 1.21232 * 127.34762 * 303.73163 * 8 6 5 10 10 N 1.35175 * 105.30483 * 123.74974 * 8 6 5 11 11 C 1.46501 * 124.33840 * 177.46896 * 10 8 6 12 12 C 1.52995 * 109.47422 * 272.25647 * 11 10 8 13 13 C 1.50696 * 115.55175 * 185.52653 * 12 11 10 14 14 H 1.08002 * 119.99967 * 144.39211 * 13 12 11 15 15 C 1.37875 * 120.00223 * 324.39043 * 13 12 11 16 16 N 1.31521 * 119.99821 * 351.22947 * 15 13 12 17 17 Si 1.86798 * 120.00424 * 171.22262 * 15 13 12 18 18 H 1.48504 * 109.46791 * 60.00242 * 17 15 13 19 19 H 1.48491 * 109.47150 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47235 * 300.00684 * 17 15 13 21 21 C 1.53001 * 117.49579 * 39.85911 * 12 11 10 22 22 C 1.53004 * 117.49741 * 331.20007 * 12 11 10 23 23 C 1.34379 * 111.31581 * 357.45303 * 10 8 6 24 24 O 1.21539 * 124.21134 * 169.10409 * 23 10 8 25 25 N 1.33344 * 111.56554 * 349.11984 * 23 10 8 26 26 C 1.46949 * 150.55354 * 202.76681 * 25 23 10 27 27 H 1.09004 * 109.46829 * 59.99839 * 1 2 3 28 28 H 1.08999 * 109.47073 * 300.00236 * 1 2 3 29 29 H 1.08993 * 109.47468 * 180.02562 * 1 2 3 30 30 H 1.08994 * 110.41740 * 1.49184 * 5 3 2 31 31 H 1.09003 * 110.41175 * 123.93456 * 5 3 2 32 32 H 1.08997 * 109.46896 * 32.26158 * 11 10 8 33 33 H 1.09004 * 109.46656 * 152.26183 * 11 10 8 34 34 H 0.96994 * 120.00029 * 185.00725 * 16 15 13 35 35 H 1.09000 * 117.50145 * 359.97438 * 21 12 11 36 36 H 1.08998 * 117.50306 * 145.02313 * 21 12 11 37 37 H 1.09005 * 117.49522 * 214.97460 * 22 12 11 38 38 H 1.08992 * 117.50075 * 359.97438 * 22 12 11 39 39 H 1.09002 * 110.48857 * 16.41736 * 26 25 23 40 40 H 1.08999 * 110.60051 * 253.81716 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3500 2.0139 -0.5002 5 6 3.3938 1.2786 -0.6908 6 6 4.3843 1.6851 0.4156 7 1 4.8461 0.8286 0.9067 8 6 5.4035 2.6812 -0.0833 9 8 6.1580 2.5532 -1.0235 10 7 5.2956 3.7460 0.7424 11 6 6.1385 4.9416 0.6637 12 6 7.4040 4.7294 1.4970 13 6 8.3110 5.9267 1.6180 14 1 8.8463 6.1078 2.5383 15 6 8.4574 6.7911 0.5539 16 7 7.9469 6.4831 -0.6185 17 14 9.3805 8.3996 0.7771 18 1 10.7745 8.1153 1.2027 19 1 9.3967 9.1435 -0.5080 20 1 8.7037 9.2189 1.8143 21 6 8.0603 3.3483 1.4454 22 6 7.3072 3.7917 2.7021 23 6 4.3158 3.5673 1.6445 24 8 4.1382 4.2822 2.6112 25 7 3.5630 2.5076 1.3471 26 6 2.2977 1.7674 1.4496 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.6184 0.2756 -1.0534 31 1 3.4230 1.9957 -1.5113 32 1 6.4138 5.1242 -0.3751 33 1 5.5887 5.7998 1.0501 34 1 8.1114 7.0550 -1.3844 35 1 7.5904 2.5908 0.8182 36 1 9.1481 3.3056 1.4995 37 1 7.8999 4.0407 3.5824 38 1 6.3419 3.3264 2.9015 39 1 1.5015 2.4206 1.8068 40 1 2.4091 0.9070 2.1093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348725129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:52 Heat of formation + Delta-G solvation = -24.591803 kcal Electronic energy + Delta-G solvation = -24849.133793 eV Core-core repulsion = 21246.340967 eV Total energy + Delta-G solvation = -3602.792825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27872 -38.96824 -38.02450 -37.00816 -36.08111 -34.39285 -32.20827 -30.98723 -29.70006 -27.09790 -26.32951 -25.23780 -24.92361 -21.91837 -21.44807 -20.85817 -19.99018 -18.90024 -17.76983 -16.81755 -16.64871 -16.32021 -15.98803 -15.63767 -15.18737 -14.91268 -14.57327 -14.47801 -14.13116 -13.86168 -13.24275 -13.14503 -13.01824 -12.45708 -12.27190 -12.06884 -11.95961 -11.80328 -11.53654 -11.05172 -10.97660 -10.82704 -10.49513 -10.40103 -10.19899 -10.14234 -10.01654 -9.70998 -9.11985 -8.97511 -8.85789 -8.53528 -8.07934 -6.11821 -4.15452 2.07409 2.30727 3.24317 3.28994 3.33109 3.36623 3.40840 3.52491 4.08159 4.22524 4.33251 4.50227 4.82128 4.83519 4.94573 4.95789 5.01540 5.03757 5.28437 5.35341 5.42100 5.47478 5.52867 5.66724 5.73996 6.08834 6.25010 6.30563 6.46029 6.68307 6.74448 6.78489 6.85434 7.08718 7.20842 7.35862 7.48932 7.71011 7.87636 7.93292 8.30983 8.55844 8.81567 9.44401 10.91281 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.031380 B = 0.004224 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.063240 B = 6627.516604 C = 6780.787702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.071 3.929 4 H 0.082 0.918 5 C -0.109 4.109 6 C 0.043 3.957 7 H 0.131 0.869 8 C 0.523 3.477 9 O -0.460 6.460 10 N -0.569 5.569 11 C 0.153 3.847 12 C 0.044 3.956 13 C -0.485 4.485 14 H 0.066 0.934 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.203 4.203 22 C -0.206 4.206 23 C 0.737 3.263 24 O -0.529 6.529 25 N -0.648 5.648 26 C 0.145 3.855 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 -11.855 -1.124 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.012 3.988 4 H 0.100 0.900 5 C -0.148 4.148 6 C -0.067 4.067 7 H 0.148 0.852 8 C 0.309 3.691 9 O -0.329 6.329 10 N -0.313 5.313 11 C 0.036 3.964 12 C 0.043 3.957 13 C -0.522 4.522 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.241 4.241 22 C -0.243 4.243 23 C 0.441 3.559 24 O -0.401 6.401 25 N -0.392 5.392 26 C 0.024 3.976 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.585 -11.309 -1.090 18.488 hybrid contribution 0.362 0.867 0.268 0.977 sum -14.223 -10.442 -0.823 17.664 Atomic orbital electron populations 1.22864 0.80675 1.03080 1.00303 1.87972 1.19991 1.26490 1.94739 1.23403 0.95338 0.85262 0.94836 0.89962 1.22344 0.91267 1.04614 0.96572 1.23374 0.93594 0.96402 0.93282 0.85171 1.20529 0.83428 0.83195 0.81958 1.90795 1.38467 1.78023 1.25603 1.47277 1.33586 1.21512 1.28962 1.22003 0.87876 0.80373 1.06166 1.19266 0.93634 0.89643 0.93198 1.20485 1.25818 1.06105 0.99841 0.91629 1.25041 0.95354 0.98214 0.94958 1.69662 1.44586 1.38363 0.99727 0.86458 0.80034 0.82935 0.77498 1.20149 1.21081 1.19945 1.23038 0.98529 1.02199 1.00369 1.22910 1.00024 1.08404 0.93007 1.15021 0.79024 0.79341 0.82489 1.90961 1.72867 1.49576 1.26698 1.48327 1.16071 1.22578 1.52186 1.22410 0.82880 0.95030 0.97280 0.93706 0.93738 0.89345 0.87848 0.89104 0.84076 0.90441 0.92269 0.91841 0.90359 0.90618 0.91659 0.89437 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.86 101.05 1.10 1.25 16 2 O -0.37 -3.22 10.33 -35.23 -0.36 -3.59 16 3 C 0.07 0.63 3.55 -24.89 -0.09 0.55 16 4 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 5 C -0.11 -1.16 6.44 -25.35 -0.16 -1.32 16 6 C 0.04 0.59 3.99 -67.08 -0.27 0.32 16 7 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 8 C 0.52 9.79 5.87 -10.66 -0.06 9.72 16 9 O -0.46 -9.85 16.97 5.60 0.10 -9.75 16 10 N -0.57 -11.79 1.85 -121.02 -0.22 -12.01 16 11 C 0.15 3.75 5.02 -4.04 -0.02 3.73 16 12 C 0.04 1.13 2.37 -155.66 -0.37 0.76 16 13 C -0.48 -13.40 9.05 -34.44 -0.31 -13.71 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 16 N -0.89 -24.36 10.69 55.43 0.59 -23.77 16 17 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 C -0.20 -4.93 9.62 -26.69 -0.26 -5.18 16 22 C -0.21 -4.88 9.58 -26.69 -0.26 -5.14 16 23 C 0.74 14.46 6.96 -88.55 -0.62 13.85 16 24 O -0.53 -12.09 17.04 5.33 0.09 -12.00 16 25 N -0.65 -9.62 4.17 -169.58 -0.71 -10.33 16 26 C 0.15 1.49 7.28 -2.83 -0.02 1.47 16 27 H 0.04 0.22 8.10 -51.93 -0.42 -0.20 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.97 7.99 -51.93 -0.42 0.55 16 31 H 0.09 1.00 7.85 -51.93 -0.41 0.60 16 32 H 0.14 3.74 5.88 -51.93 -0.31 3.44 16 33 H 0.08 1.96 7.97 -51.93 -0.41 1.55 16 34 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 35 H 0.06 1.49 5.38 -51.93 -0.28 1.21 16 36 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.06 1.51 5.55 -51.93 -0.29 1.22 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -31.96 327.45 -7.47 -39.43 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.44 Total: 3.18 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -1.43 Total: 8.01 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.34 Total: -46.11 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.18 Total: -25.33 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.96 -7.47 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348725129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.842 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds