Wall clock time and date at job start Tue Mar 31 2020 03:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34956 * 125.52950 * 2 1 4 4 C 1.41209 * 108.24286 * 179.97438 * 3 2 1 5 5 N 1.32936 * 126.37667 * 180.02562 * 4 3 2 6 6 C 1.33832 * 120.00100 * 359.97438 * 5 4 3 7 7 O 1.21843 * 119.99758 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00054 * 179.97438 * 6 5 4 9 9 C 1.46493 * 119.99908 * 179.97438 * 8 6 5 10 10 C 1.53000 * 112.99797 * 48.17829 * 9 8 6 11 11 C 1.54035 * 113.82230 * 276.18923 * 9 8 6 12 12 O 1.44170 * 85.52196 * 223.19708 * 11 9 8 13 13 C 1.44181 * 93.33780 * 24.19166 * 12 11 9 14 14 N 1.37423 * 107.24573 * 359.97438 * 4 3 2 15 15 H 0.96994 * 126.36745 * 179.97438 * 14 4 3 16 16 N 1.36455 * 125.52241 * 179.97438 * 2 1 3 17 17 C 1.46504 * 125.85005 * 359.75529 * 16 2 1 18 18 C 1.50696 * 109.47499 * 85.00220 * 17 16 2 19 19 H 1.08010 * 119.99905 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00630 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00588 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99714 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47250 * 89.99871 * 22 20 18 24 24 H 1.48496 * 109.47399 * 210.00366 * 22 20 18 25 25 H 1.48500 * 109.47125 * 330.00285 * 22 20 18 26 26 H 1.09002 * 109.46771 * 270.02541 * 1 2 3 27 27 H 1.08999 * 109.47026 * 30.01980 * 1 2 3 28 28 H 1.08993 * 109.47364 * 150.02269 * 1 2 3 29 29 H 1.07998 * 125.87489 * 359.97438 * 3 2 1 30 30 H 0.97004 * 119.99760 * 0.02562 * 8 6 5 31 31 H 1.08998 * 109.47503 * 69.66778 * 10 9 8 32 32 H 1.09005 * 109.47229 * 189.66679 * 10 9 8 33 33 H 1.09001 * 109.47404 * 309.66039 * 10 9 8 34 34 H 1.09006 * 113.85846 * 337.34716 * 11 9 8 35 35 H 1.08999 * 113.86247 * 109.04264 * 11 9 8 36 36 H 1.09006 * 113.86168 * 221.66093 * 13 12 11 37 37 H 1.09001 * 113.98327 * 89.96904 * 13 12 11 38 38 H 1.09004 * 109.46556 * 204.99809 * 17 16 2 39 39 H 1.08999 * 109.47484 * 324.99661 * 17 16 2 40 40 H 0.97003 * 120.00422 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0983 0.0000 4 6 3.6396 0.6787 0.0006 5 7 4.7104 1.4664 0.0013 6 6 4.5627 2.7965 0.0009 7 8 3.4467 3.2855 0.0004 8 7 5.6484 3.5951 0.0021 9 6 5.4867 5.0511 0.0011 10 6 4.4858 5.5421 1.0490 11 6 5.2691 5.6520 -1.4004 12 8 6.1963 6.6739 -0.9825 13 6 6.8186 5.8248 0.0026 14 7 3.6386 -0.6955 0.0015 15 1 4.4192 -1.2712 0.0018 16 7 2.2998 -1.1106 0.0005 17 6 1.8319 -2.4989 0.0062 18 6 1.5492 -2.9396 -1.4069 19 1 1.7024 -2.2539 -2.2273 20 6 1.0941 -4.2176 -1.6525 21 7 0.8469 -4.6020 -2.8857 22 14 0.8285 -5.4032 -0.2337 23 1 -0.5630 -5.2711 0.2680 24 1 1.0561 -6.7941 -0.7016 25 1 1.7813 -5.0870 0.8606 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5134 29 1 1.9469 2.1219 -0.0004 30 1 6.5369 3.2057 0.0028 31 1 4.9045 5.4014 2.0454 32 1 4.2803 6.6003 0.8874 33 1 3.5594 4.9745 0.9606 34 1 5.6399 5.0250 -2.2114 35 1 4.2567 6.0180 -1.5709 36 1 7.0352 6.3281 0.9450 37 1 7.6630 5.2500 -0.3778 38 1 2.6000 -3.1393 0.4397 39 1 0.9202 -2.5726 0.5991 40 1 0.5270 -5.5013 -3.0585 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602922770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:08 Heat of formation + Delta-G solvation = 67.238560 kcal Electronic energy + Delta-G solvation = -23432.093272 eV Core-core repulsion = 19865.575261 eV Total energy + Delta-G solvation = -3566.518011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02838 -40.77069 -38.53783 -34.68860 -33.72987 -33.09744 -32.29701 -31.20534 -29.83680 -27.56951 -27.07902 -26.70768 -26.07760 -23.00018 -21.98489 -20.07346 -19.63109 -19.19784 -17.57812 -17.44079 -16.76732 -16.34420 -16.05912 -15.54714 -15.14475 -14.85171 -14.75262 -14.28996 -13.89874 -13.50872 -13.05676 -12.98718 -12.82579 -12.67025 -12.61920 -12.35022 -12.20939 -11.99803 -11.89453 -11.52178 -11.41180 -11.06692 -10.90122 -10.68391 -10.06416 -9.86101 -9.60407 -9.53165 -9.06465 -8.92079 -8.67357 -8.31728 -6.88600 -6.53236 -4.61676 1.67756 1.95447 2.94264 2.99135 3.04926 3.05665 3.46437 3.59789 3.95664 4.12633 4.31959 4.64164 4.75087 4.83650 4.96574 5.03659 5.20804 5.45628 5.50200 5.60315 5.70685 5.78557 5.78814 5.85460 5.91085 5.99322 6.02144 6.04732 6.13657 6.26756 6.38009 6.50659 6.68385 6.92227 7.01002 7.29795 7.55909 7.72129 7.99486 8.24469 8.41059 8.50965 8.99302 9.55728 10.58215 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.037168 B = 0.002985 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.153741 B = 9377.492948 C = 9515.713617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.192 3.808 3 C -0.330 4.330 4 C 0.491 3.509 5 N -0.713 5.713 6 C 0.688 3.312 7 O -0.625 6.625 8 N -0.722 5.722 9 C 0.134 3.866 10 C -0.156 4.156 11 C 0.029 3.971 12 O -0.378 6.378 13 C 0.033 3.967 14 N -0.471 5.471 15 H 0.444 0.556 16 N -0.344 5.344 17 C 0.229 3.771 18 C -0.562 4.562 19 H 0.085 0.915 20 C 0.084 3.916 21 N -0.876 5.876 22 Si 0.872 3.128 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.265 1.265 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.185 0.815 30 H 0.398 0.602 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 11.198 8.154 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 C -0.362 4.362 4 C 0.238 3.762 5 N -0.478 5.478 6 C 0.388 3.612 7 O -0.507 6.507 8 N -0.378 5.378 9 C 0.046 3.954 10 C -0.213 4.213 11 C -0.049 4.049 12 O -0.296 6.296 13 C -0.044 4.044 14 N -0.193 5.193 15 H 0.292 0.708 16 N -0.131 5.131 17 C 0.111 3.889 18 C -0.600 4.600 19 H 0.103 0.897 20 C -0.122 4.122 21 N -0.511 5.511 22 Si 0.698 3.302 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.202 0.798 30 H 0.233 0.767 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.942 11.046 7.943 14.475 hybrid contribution 0.247 -1.276 0.479 1.385 sum 5.189 9.770 8.422 13.903 Atomic orbital electron populations 1.20671 0.86444 1.05329 1.03473 1.21289 0.94427 0.85378 0.92238 1.22216 0.91052 1.00287 1.22687 1.18664 0.91093 0.81926 0.84469 1.68046 1.28717 1.03953 1.47055 1.16598 0.83006 0.84804 0.76809 1.90641 1.24422 1.78165 1.57480 1.44822 1.08588 1.04062 1.80294 1.23402 0.95812 0.80207 0.95996 1.22067 1.01436 1.01532 0.96304 1.24578 0.94879 0.88361 0.97127 1.89670 1.51939 1.32157 1.55792 1.24398 0.95337 0.91248 0.93430 1.44328 0.98562 1.05010 1.71423 0.70839 1.47305 0.92851 1.07355 1.65594 1.20277 0.95860 0.72644 1.00106 1.21232 1.48077 0.99896 0.90815 0.89669 1.24815 0.94035 0.97513 0.95858 1.69855 1.42633 1.19521 1.19116 0.86921 0.79584 0.81343 0.82356 1.19300 1.20284 1.18974 0.89927 0.89152 0.88954 0.79829 0.76736 0.92588 0.91799 0.87602 0.89990 0.88603 0.88622 0.89882 0.93469 0.92407 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.92 36.01 0.36 -1.01 16 2 C 0.19 3.31 6.92 -81.70 -0.57 2.74 16 3 C -0.33 -6.14 9.41 -39.62 -0.37 -6.52 16 4 C 0.49 9.41 8.07 -155.29 -1.25 8.15 16 5 N -0.71 -13.66 10.59 -15.79 -0.17 -13.82 16 6 C 0.69 12.77 8.24 -87.76 -0.72 12.04 16 7 O -0.62 -12.52 10.74 5.06 0.05 -12.47 16 8 N -0.72 -10.53 5.35 -58.82 -0.31 -10.85 16 9 C 0.13 1.73 1.35 -130.74 -0.18 1.55 16 10 C -0.16 -2.02 9.01 37.16 0.33 -1.69 16 11 C 0.03 0.37 8.57 37.61 0.32 0.69 16 12 O -0.38 -4.90 12.38 -35.23 -0.44 -5.33 16 13 C 0.03 0.35 8.50 37.61 0.32 0.67 16 14 N -0.47 -8.30 7.38 31.33 0.23 -8.07 16 15 H 0.44 6.81 8.96 -182.56 -1.64 5.17 16 16 N -0.34 -6.31 3.63 -58.04 -0.21 -6.52 16 17 C 0.23 4.42 4.78 -5.19 -0.02 4.39 16 18 C -0.56 -13.48 9.94 -34.45 -0.34 -13.82 16 19 H 0.09 2.36 8.06 -52.48 -0.42 1.93 16 20 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.88 -23.69 13.96 55.43 0.77 -22.92 16 22 Si 0.87 17.71 27.47 -169.99 -4.67 13.04 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.02 6.54 56.52 0.37 -4.65 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.36 7.81 -51.93 -0.41 0.95 16 29 H 0.18 3.55 5.77 -52.49 -0.30 3.24 16 30 H 0.40 5.07 8.73 -40.82 -0.36 4.71 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.74 8.06 -51.93 -0.42 0.33 16 33 H 0.11 1.68 5.44 -51.93 -0.28 1.40 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 36 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.08 0.73 8.11 -51.93 -0.42 0.30 16 38 H 0.05 0.88 7.20 -51.93 -0.37 0.51 16 39 H 0.06 1.03 7.32 -51.93 -0.38 0.65 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -30.07 334.98 -8.61 -38.68 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.70 Total: 14.03 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -2.22 Total: 9.18 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.31 Total: -62.19 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.38 Total: -17.80 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.67 Total: 13.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.07 -8.61 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602922770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.922 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds