Wall clock time and date at job start Tue Mar 31 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99786 * 2 1 4 4 C 1.52999 * 109.46922 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47458 * 64.99836 * 4 3 2 6 6 C 1.46499 * 119.99846 * 274.73117 * 5 4 3 7 7 C 1.50705 * 109.46852 * 263.52593 * 6 5 4 8 8 H 1.07999 * 120.00130 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99914 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00014 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99940 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46932 * 60.00154 * 11 9 7 13 13 H 1.48495 * 109.47144 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47200 * 300.00505 * 11 9 7 15 15 C 1.34774 * 120.00150 * 94.72617 * 5 4 3 16 16 O 1.21394 * 119.99919 * 354.30197 * 15 5 4 17 17 C 1.49095 * 119.99996 * 174.58315 * 15 5 4 18 18 O 1.21608 * 119.99915 * 4.27657 * 17 15 5 19 19 C 1.41531 * 119.99736 * 184.28688 * 17 15 5 20 20 C 1.38804 * 126.31811 * 0.02562 * 19 17 15 21 21 C 1.39383 * 106.92631 * 179.97438 * 20 19 17 22 22 C 1.35880 * 107.91843 * 359.97438 * 21 20 19 23 23 N 1.34883 * 109.08074 * 359.75252 * 22 21 20 24 24 C 1.46501 * 125.64284 * 180.24886 * 23 22 21 25 25 H 1.09000 * 109.47014 * 300.00443 * 1 2 3 26 26 H 1.09003 * 109.46610 * 60.00154 * 1 2 3 27 27 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47495 * 59.99864 * 3 2 1 29 29 H 1.09001 * 109.47325 * 299.99706 * 3 2 1 30 30 H 1.09000 * 109.47182 * 304.99482 * 4 3 2 31 31 H 1.09001 * 109.46758 * 184.99896 * 4 3 2 32 32 H 1.09003 * 109.47159 * 23.52241 * 6 5 4 33 33 H 1.08997 * 109.47593 * 143.52220 * 6 5 4 34 34 H 0.96994 * 119.99748 * 179.97438 * 10 9 7 35 35 H 1.08000 * 126.53450 * 359.96072 * 20 19 17 36 36 H 1.07994 * 126.04292 * 180.02562 * 21 20 19 37 37 H 1.08004 * 125.45660 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47387 * 270.17394 * 24 23 22 39 39 H 1.08995 * 109.47586 * 30.18122 * 24 23 22 40 40 H 1.09007 * 109.46670 * 150.18450 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0061 -0.8951 -1.3761 7 6 5.4001 -1.3940 -1.0949 8 1 6.1849 -0.6940 -0.8493 9 6 5.6734 -2.7443 -1.1511 10 7 4.7175 -3.5968 -1.4496 11 14 7.4014 -3.3627 -0.8033 12 1 7.7987 -2.9733 0.5736 13 1 7.4322 -4.8421 -0.9282 14 1 8.3472 -2.7642 -1.7792 15 6 4.3528 1.3364 -2.2911 16 8 4.2302 2.5424 -2.2267 17 6 4.9146 0.7088 -3.5213 18 8 4.9607 -0.5025 -3.6192 19 6 5.3945 1.5228 -4.5750 20 6 5.4060 2.9105 -4.6020 21 6 5.9629 3.2881 -5.8227 22 6 6.2765 2.1567 -6.5068 23 7 5.9431 1.0836 -5.7608 24 6 6.1293 -0.3169 -6.1486 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1766 0.0889 32 1 3.3115 -1.3347 -0.6602 33 1 3.7150 -1.1805 -2.3869 34 1 4.9099 -4.5466 -1.4896 35 1 5.0509 3.5716 -3.8253 36 1 6.1185 4.3007 -6.1640 37 1 6.7252 2.1224 -7.4886 38 1 5.2419 -0.6695 -6.6742 39 1 6.9966 -0.4003 -6.8035 40 1 6.2879 -0.9228 -5.2565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000672923225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:09 Heat of formation + Delta-G solvation = -38.588494 kcal Electronic energy + Delta-G solvation = -24556.654101 eV Core-core repulsion = 20953.254333 eV Total energy + Delta-G solvation = -3603.399767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21447 -39.45601 -37.70263 -37.14258 -34.92820 -32.66878 -32.47160 -29.87809 -29.51945 -27.01564 -26.27130 -26.07507 -24.66871 -22.80700 -22.40187 -20.65649 -19.60427 -18.31265 -16.77774 -16.65717 -16.34036 -15.87204 -15.52725 -15.34085 -15.17101 -14.75145 -14.34688 -14.18492 -14.09392 -13.56244 -13.19527 -13.01512 -12.75716 -12.24494 -12.07900 -11.98512 -11.89861 -11.78808 -11.64867 -11.50237 -11.44420 -10.91648 -10.83023 -10.66431 -10.28842 -9.86821 -9.61132 -9.35949 -8.57990 -8.47140 -8.14689 -7.92173 -7.71445 -5.98150 -4.00129 1.29831 2.66109 2.94853 3.19278 3.32380 3.36391 3.39452 3.73689 4.11233 4.21032 4.46072 4.92285 5.02131 5.16235 5.37501 5.39449 5.42230 5.50297 5.57161 5.64676 5.65972 5.66951 5.70411 5.74909 5.88712 5.91731 6.01384 6.32484 6.45958 6.50220 6.86709 7.03385 7.26806 7.45206 7.45837 7.52019 7.61457 7.94598 8.07325 8.28167 8.30720 8.79033 9.02491 9.61127 11.10052 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.007344 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.048927 B = 3811.656632 C = 5785.358218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.116 3.884 5 N -0.557 5.557 6 C 0.231 3.769 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.279 1.279 15 C 0.492 3.508 16 O -0.555 6.555 17 C 0.386 3.614 18 O -0.384 6.384 19 C -0.079 4.079 20 C -0.098 4.098 21 C -0.227 4.227 22 C 0.016 3.984 23 N -0.408 5.408 24 C 0.061 3.939 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.261 0.739 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.164 0.836 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.378 9.453 -5.414 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C -0.008 4.008 5 N -0.288 5.288 6 C 0.112 3.888 7 C -0.556 4.556 8 H 0.070 0.930 9 C -0.133 4.133 10 N -0.527 5.527 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.205 1.205 15 C 0.277 3.723 16 O -0.437 6.437 17 C 0.260 3.740 18 O -0.255 6.255 19 C -0.189 4.189 20 C -0.123 4.123 21 C -0.251 4.251 22 C -0.122 4.122 23 N -0.081 5.081 24 C -0.080 4.080 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.182 0.818 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.318 8.569 -5.500 10.443 hybrid contribution 0.835 -0.257 0.086 0.877 sum -1.483 8.311 -5.415 10.030 Atomic orbital electron populations 1.22686 0.82098 1.02472 0.99133 1.88084 1.18736 1.27243 1.95198 1.22983 0.94897 0.85118 0.99936 1.21505 0.91563 0.99823 0.87880 1.48340 1.59018 1.10550 1.10862 1.19956 0.97557 0.71096 1.00156 1.21291 0.95059 0.92091 1.47160 0.92997 1.24800 0.96716 0.96619 0.95194 1.69925 1.31971 1.02429 1.48348 0.86703 0.85140 0.77601 0.78771 1.20310 1.21236 1.20488 1.20243 0.79887 0.86775 0.85391 1.90551 1.56859 1.14253 1.82004 1.19964 0.79050 0.88655 0.86330 1.90800 1.40950 1.15011 1.78772 1.19599 1.13967 0.94614 0.90742 1.22177 0.99289 0.92778 0.98066 1.20931 1.09608 0.97715 0.96853 1.21987 1.05801 0.86167 0.98209 1.43892 1.43939 1.06886 1.13384 1.22348 1.02386 0.79335 1.03924 0.94715 0.94625 0.89816 0.92998 0.93237 0.89244 0.88984 0.93410 0.92192 0.92890 0.81774 0.84336 0.81853 0.90581 0.90168 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.82 9.21 -35.23 -0.32 -7.14 16 3 C 0.05 0.79 6.28 37.16 0.23 1.02 16 4 C 0.12 2.13 5.84 -4.04 -0.02 2.10 16 5 N -0.56 -12.33 2.46 -175.70 -0.43 -12.77 16 6 C 0.23 5.93 4.51 -5.19 -0.02 5.91 16 7 C -0.52 -14.30 7.91 -34.44 -0.27 -14.57 16 8 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.49 10.76 7.63 -11.75 -0.09 10.67 16 16 O -0.55 -11.79 13.62 5.46 0.07 -11.72 16 17 C 0.39 8.38 6.83 -33.82 -0.23 8.15 16 18 O -0.38 -9.17 10.35 5.27 0.05 -9.11 16 19 C -0.08 -1.51 6.72 -83.70 -0.56 -2.07 16 20 C -0.10 -1.68 9.95 -38.95 -0.39 -2.07 16 21 C -0.23 -3.21 10.81 -40.00 -0.43 -3.64 16 22 C 0.02 0.21 11.35 -17.06 -0.19 0.02 16 23 N -0.41 -6.58 3.15 -121.68 -0.38 -6.96 16 24 C 0.06 0.85 10.53 59.85 0.63 1.48 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.65 8.11 -51.93 -0.42 1.23 16 31 H 0.09 1.56 7.37 -51.93 -0.38 1.17 16 32 H 0.05 1.31 6.83 -51.93 -0.35 0.95 16 33 H 0.06 1.68 5.73 -51.93 -0.30 1.38 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.16 2.89 6.09 -52.49 -0.32 2.57 16 36 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.11 1.85 6.27 -51.92 -0.33 1.53 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -32.52 337.37 -6.00 -38.52 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.45 Total: 2.19 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.34 Total: 10.42 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.08 Total: -44.89 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.20 Total: -27.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.52 -6.00 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000672923225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.067 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds