Wall clock time and date at job start Tue Mar 31 2020 03:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99786 * 2 1 4 4 C 1.52999 * 109.46922 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47458 * 64.99836 * 4 3 2 6 6 C 1.46499 * 119.99846 * 274.73117 * 5 4 3 7 7 C 1.50705 * 109.46852 * 263.52593 * 6 5 4 8 8 H 1.07999 * 120.00130 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99914 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00014 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99940 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46932 * 60.00154 * 11 9 7 13 13 H 1.48495 * 109.47144 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47200 * 300.00505 * 11 9 7 15 15 C 1.34774 * 120.00150 * 94.72617 * 5 4 3 16 16 O 1.21394 * 119.99919 * 354.30197 * 15 5 4 17 17 C 1.49095 * 119.99996 * 174.58315 * 15 5 4 18 18 O 1.21608 * 119.99915 * 4.27657 * 17 15 5 19 19 C 1.41531 * 119.99736 * 184.28688 * 17 15 5 20 20 C 1.38804 * 126.31811 * 0.02562 * 19 17 15 21 21 C 1.39383 * 106.92631 * 179.97438 * 20 19 17 22 22 C 1.35880 * 107.91843 * 359.97438 * 21 20 19 23 23 N 1.34883 * 109.08074 * 359.75252 * 22 21 20 24 24 C 1.46501 * 125.64284 * 180.24886 * 23 22 21 25 25 H 1.09000 * 109.47014 * 300.00443 * 1 2 3 26 26 H 1.09003 * 109.46610 * 60.00154 * 1 2 3 27 27 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47495 * 59.99864 * 3 2 1 29 29 H 1.09001 * 109.47325 * 299.99706 * 3 2 1 30 30 H 1.09000 * 109.47182 * 304.99482 * 4 3 2 31 31 H 1.09001 * 109.46758 * 184.99896 * 4 3 2 32 32 H 1.09003 * 109.47159 * 23.52241 * 6 5 4 33 33 H 1.08997 * 109.47593 * 143.52220 * 6 5 4 34 34 H 0.96994 * 119.99748 * 179.97438 * 10 9 7 35 35 H 1.08000 * 126.53450 * 359.96072 * 20 19 17 36 36 H 1.07994 * 126.04292 * 180.02562 * 21 20 19 37 37 H 1.08004 * 125.45660 * 180.02562 * 22 21 20 38 38 H 1.09004 * 109.47387 * 270.17394 * 24 23 22 39 39 H 1.08995 * 109.47586 * 30.18122 * 24 23 22 40 40 H 1.09007 * 109.46670 * 150.18450 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0061 -0.8951 -1.3761 7 6 5.4001 -1.3940 -1.0949 8 1 6.1849 -0.6940 -0.8493 9 6 5.6734 -2.7443 -1.1511 10 7 4.7175 -3.5968 -1.4496 11 14 7.4014 -3.3627 -0.8033 12 1 7.7987 -2.9733 0.5736 13 1 7.4322 -4.8421 -0.9282 14 1 8.3472 -2.7642 -1.7792 15 6 4.3528 1.3364 -2.2911 16 8 4.2302 2.5424 -2.2267 17 6 4.9146 0.7088 -3.5213 18 8 4.9607 -0.5025 -3.6192 19 6 5.3945 1.5228 -4.5750 20 6 5.4060 2.9105 -4.6020 21 6 5.9629 3.2881 -5.8227 22 6 6.2765 2.1567 -6.5068 23 7 5.9431 1.0836 -5.7608 24 6 6.1293 -0.3169 -6.1486 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8515 0.5683 0.8410 31 1 3.9785 2.1766 0.0889 32 1 3.3115 -1.3347 -0.6602 33 1 3.7150 -1.1805 -2.3869 34 1 4.9099 -4.5466 -1.4896 35 1 5.0509 3.5716 -3.8253 36 1 6.1185 4.3007 -6.1640 37 1 6.7252 2.1224 -7.4886 38 1 5.2419 -0.6695 -6.6742 39 1 6.9966 -0.4003 -6.8035 40 1 6.2879 -0.9228 -5.2565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000672923225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:08 Heat of formation + Delta-G solvation = -59.625081 kcal Electronic energy + Delta-G solvation = -24557.566316 eV Core-core repulsion = 20953.254333 eV Total energy + Delta-G solvation = -3604.311982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53633 -41.04743 -39.20401 -38.64067 -36.67103 -34.56944 -33.82581 -31.43255 -30.87141 -28.96322 -27.42674 -27.31962 -26.18120 -24.76823 -23.84712 -21.99974 -20.90502 -19.82118 -18.69830 -18.18944 -17.90827 -17.34001 -17.04342 -16.82211 -16.52525 -16.39821 -16.05073 -15.59730 -15.48499 -15.09378 -14.55516 -14.41563 -14.19038 -14.09785 -13.58261 -13.35838 -13.21053 -13.13190 -13.09997 -12.93336 -12.79378 -12.77932 -12.66529 -12.23732 -12.04501 -11.74146 -11.62027 -10.63020 -10.60110 -9.95214 -9.67963 -9.55250 -9.17053 -8.12455 -6.22325 -0.22113 1.24090 1.36910 1.38660 1.46219 1.65820 1.94130 2.23845 2.42794 2.56085 2.93839 3.19829 3.31026 3.96904 4.10914 4.13543 4.18246 4.20086 4.35299 4.37131 4.49873 4.51840 4.54762 4.57933 4.61039 4.75345 4.83993 4.86517 5.03515 5.24239 5.31179 5.39691 5.58651 5.82647 5.83989 5.96582 6.14049 6.24914 6.36688 6.38454 6.54778 6.83663 7.11188 7.43274 8.95261 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.007344 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.048927 B = 3811.656632 C = 5785.358218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.565 5.565 6 C 0.257 3.743 7 C -0.524 4.524 8 H 0.042 0.958 9 C 0.022 3.978 10 N -0.920 5.920 11 Si 0.951 3.049 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.485 3.515 16 O -0.551 6.551 17 C 0.382 3.618 18 O -0.425 6.425 19 C -0.131 4.131 20 C -0.097 4.097 21 C -0.231 4.231 22 C 0.049 3.951 23 N -0.415 5.415 24 C 0.061 3.939 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.026 0.974 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.217 0.783 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 11.078 -6.809 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.022 4.022 4 C -0.014 4.014 5 N -0.295 5.295 6 C 0.137 3.863 7 C -0.563 4.563 8 H 0.060 0.940 9 C -0.178 4.178 10 N -0.560 5.560 11 Si 0.777 3.223 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.204 1.204 15 C 0.270 3.730 16 O -0.433 6.433 17 C 0.259 3.741 18 O -0.300 6.300 19 C -0.239 4.239 20 C -0.124 4.124 21 C -0.254 4.254 22 C -0.090 4.090 23 N -0.087 5.087 24 C -0.079 4.079 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.172 0.828 36 H 0.191 0.809 37 H 0.233 0.767 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.176 10.234 -6.869 12.381 hybrid contribution 0.459 -0.601 0.406 0.858 sum -0.717 9.633 -6.463 11.622 Atomic orbital electron populations 1.22872 0.79925 1.03268 1.00739 1.88029 1.21281 1.28440 1.95511 1.22941 0.93094 0.84805 1.01378 1.21756 0.93545 1.00008 0.86079 1.48305 1.59557 1.09307 1.12371 1.19357 0.96079 0.73127 0.97738 1.21437 0.95545 0.92280 1.47053 0.93965 1.25557 1.00483 0.96779 0.94958 1.70041 1.33921 1.02674 1.49336 0.85729 0.80450 0.77328 0.78820 1.19354 1.20329 1.20392 1.20518 0.79827 0.86939 0.85696 1.90527 1.56791 1.13853 1.82118 1.20235 0.78365 0.88604 0.86874 1.90786 1.43466 1.16205 1.79558 1.19401 1.17471 0.95056 0.92015 1.22270 0.98887 0.91978 0.99249 1.21349 1.08844 0.99795 0.95366 1.22909 1.02298 0.84707 0.99080 1.44127 1.43533 1.08242 1.12791 1.22408 1.04617 0.78071 1.02851 0.91984 0.94009 0.89568 0.89177 0.93862 0.89803 0.87497 0.95558 0.94856 0.92767 0.82832 0.80933 0.76663 0.89814 0.85885 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.31 9.21 -148.98 -1.37 -16.69 16 3 C 0.05 1.78 6.28 71.98 0.45 2.23 16 4 C 0.11 4.06 5.84 86.38 0.50 4.56 16 5 N -0.56 -26.10 2.46 -828.14 -2.04 -28.14 16 6 C 0.26 13.97 4.51 85.63 0.39 14.35 16 7 C -0.52 -30.17 7.91 25.60 0.20 -29.97 16 8 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.02 1.24 5.46 84.65 0.46 1.71 16 10 N -0.92 -55.44 13.29 21.45 0.28 -55.15 16 11 Si 0.95 45.23 29.54 68.60 2.03 47.25 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 C 0.49 22.07 7.63 87.16 0.66 22.73 16 16 O -0.55 -23.88 13.62 -3.38 -0.05 -23.93 16 17 C 0.38 17.38 6.83 26.00 0.18 17.56 16 18 O -0.42 -21.62 10.35 -4.06 -0.04 -21.67 16 19 C -0.13 -5.00 6.72 39.15 0.26 -4.74 16 20 C -0.10 -3.26 9.95 22.68 0.23 -3.04 16 21 C -0.23 -5.69 10.81 22.00 0.24 -5.45 16 22 C 0.05 1.09 11.35 83.68 0.95 2.04 16 23 N -0.41 -12.65 3.15 -538.87 -1.70 -14.34 16 24 C 0.06 1.64 10.53 127.77 1.34 2.99 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 3.19 8.11 -2.39 -0.02 3.17 16 31 H 0.11 3.62 7.37 -2.39 -0.02 3.60 16 32 H 0.03 1.53 6.83 -2.39 -0.02 1.51 16 33 H 0.03 2.01 5.73 -2.39 -0.01 1.99 16 34 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.15 5.38 6.09 -2.91 -0.02 5.37 16 36 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.48 6.27 -2.38 -0.01 2.47 16 Total: -1.00 -74.38 337.37 5.28 -69.10 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.05 Total: 16.59 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 7.12 Total: 26.97 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -3.45 Total: -97.64 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -1.46 Total: -62.28 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -74.38 5.28 -69.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000672923225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.476 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds