Wall clock time and date at job start Tue Mar 31 2020 03:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99958 * 2 1 4 4 O 1.42910 * 109.46784 * 84.36140 * 3 2 1 5 5 C 1.42893 * 113.99966 * 285.25038 * 4 3 2 6 6 C 1.50696 * 109.47585 * 204.35948 * 3 2 1 7 7 O 1.21284 * 119.99631 * 3.02898 * 6 3 2 8 8 N 1.34772 * 120.00520 * 183.02517 * 6 3 2 9 9 C 1.46510 * 119.99587 * 2.36178 * 8 6 3 10 10 C 1.50694 * 109.47020 * 269.73560 * 9 8 6 11 11 H 1.08008 * 120.00231 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99956 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99905 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00052 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47317 * 60.00375 * 14 12 10 16 16 H 1.48504 * 109.47365 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47544 * 300.00188 * 14 12 10 18 18 C 1.46497 * 120.00595 * 182.35945 * 8 6 3 19 19 C 1.50701 * 109.47257 * 270.00712 * 18 8 6 20 20 C 1.38674 * 120.41262 * 270.24728 * 19 18 8 21 21 C 1.38634 * 118.41910 * 180.23990 * 20 19 18 22 22 C 1.38224 * 119.15957 * 359.75473 * 21 20 19 23 23 N 1.31865 * 120.76619 * 359.97438 * 22 21 20 24 24 C 1.31882 * 121.72123 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.47348 * 66.54211 * 1 2 3 26 26 H 1.08996 * 109.47059 * 186.54417 * 1 2 3 27 27 H 1.08997 * 109.47001 * 306.54071 * 1 2 3 28 28 H 1.09001 * 109.47717 * 324.36839 * 3 2 1 29 29 H 1.09009 * 109.47253 * 193.24551 * 5 4 3 30 30 H 1.09005 * 109.47280 * 313.23920 * 5 4 3 31 31 H 1.09000 * 109.47418 * 73.24639 * 5 4 3 32 32 H 1.08998 * 109.47139 * 29.73621 * 9 8 6 33 33 H 1.09003 * 109.46887 * 149.73763 * 9 8 6 34 34 H 0.97005 * 119.99555 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.47652 * 149.99841 * 18 8 6 36 36 H 1.09012 * 109.46755 * 29.99922 * 18 8 6 37 37 H 1.08000 * 120.79462 * 359.97185 * 20 19 18 38 38 H 1.07993 * 120.41996 * 179.72779 * 21 20 19 39 39 H 1.08002 * 119.62082 * 180.02562 * 22 21 20 40 40 H 1.08003 * 119.61873 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 2.0830 1.7944 1.3409 5 6 0.8257 2.2119 1.8763 6 6 3.3970 1.2381 -0.5860 7 8 3.8228 0.1873 -1.0166 8 7 4.1639 2.3453 -0.6317 9 6 3.6695 3.6026 -0.0649 10 6 2.9364 4.3791 -1.1282 11 1 2.8472 3.9761 -2.1263 12 6 2.3786 5.6033 -0.8267 13 7 2.4868 6.0937 0.3888 14 14 1.4693 6.5655 -2.1445 15 1 0.3237 5.7622 -2.6422 16 1 0.9682 7.8400 -1.5701 17 1 2.3933 6.8595 -3.2692 18 6 5.4918 2.2919 -1.2480 19 6 6.5163 1.9310 -0.2034 20 6 7.1497 2.9224 0.5306 21 6 8.0890 2.5441 1.4775 22 6 8.3573 1.2006 1.6607 23 7 7.7314 0.2845 0.9481 24 6 6.8323 0.6078 0.0390 25 1 -0.3634 0.4091 -0.9427 26 1 -0.3633 -1.0209 0.1171 27 1 -0.3633 0.6118 0.8256 28 1 1.3950 1.9772 -0.5987 29 1 0.9912 2.7803 2.7916 30 1 0.3105 2.8382 1.1480 31 1 0.2162 1.3358 2.0980 32 1 2.9910 3.3871 0.7605 33 1 4.5105 4.1920 0.3005 34 1 2.0946 6.9553 0.6008 35 1 5.7343 3.2655 -1.6738 36 1 5.4963 1.5392 -2.0366 37 1 6.9201 3.9647 0.3656 38 1 8.6049 3.2897 2.0642 39 1 9.0873 0.8976 2.3966 40 1 6.3405 -0.1704 -0.5257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709520572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:41 Heat of formation + Delta-G solvation = -95.912152 kcal Electronic energy + Delta-G solvation = -24692.718522 eV Core-core repulsion = 21086.833014 eV Total energy + Delta-G solvation = -3605.885508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56269 -40.83078 -39.34902 -37.44533 -36.63876 -34.80297 -33.53215 -32.63944 -30.19252 -29.33084 -27.73505 -26.94148 -26.03236 -24.86643 -24.30916 -23.11484 -20.63085 -18.83282 -18.78201 -18.38316 -18.00673 -17.86623 -17.17580 -16.84384 -16.49187 -16.37882 -15.94436 -15.43294 -15.20541 -14.98212 -14.69855 -14.49887 -14.25314 -14.17414 -13.93303 -13.73859 -13.43136 -13.16874 -13.06395 -12.85952 -12.55537 -12.50070 -12.38557 -12.04959 -11.73575 -11.11191 -11.00095 -10.80622 -10.70473 -10.52126 -10.41034 -9.95786 -9.54776 -8.17186 -6.31558 0.12221 0.34266 1.30162 1.43161 1.45868 1.52029 1.87753 2.41131 2.80441 2.90694 3.06819 3.13416 3.53890 3.59637 3.76083 3.90126 3.94120 4.10436 4.11404 4.18430 4.38137 4.42929 4.47651 4.55650 4.66825 4.69819 4.73851 4.87192 4.88071 4.89954 5.20141 5.35807 5.38045 5.67254 5.75425 5.79530 5.90121 5.92101 6.07976 6.42507 6.79917 7.01707 7.12572 7.39219 8.87896 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.006696 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.531835 B = 4180.776120 C = 5666.628518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.398 6.398 3 C 0.244 3.756 4 O -0.392 6.392 5 C 0.022 3.978 6 C 0.527 3.473 7 O -0.562 6.562 8 N -0.576 5.576 9 C 0.235 3.765 10 C -0.552 4.552 11 H 0.054 0.946 12 C 0.030 3.970 13 N -0.912 5.912 14 Si 0.950 3.050 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.161 3.839 19 C -0.158 4.158 20 C -0.066 4.066 21 C -0.167 4.167 22 C 0.089 3.911 23 N -0.513 5.513 24 C 0.104 3.896 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.169 0.831 39 H 0.187 0.813 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 -3.763 2.251 4.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.318 6.318 3 C 0.146 3.854 4 O -0.313 6.313 5 C -0.073 4.073 6 C 0.313 3.687 7 O -0.442 6.442 8 N -0.307 5.307 9 C 0.115 3.885 10 C -0.591 4.591 11 H 0.072 0.928 12 C -0.172 4.172 13 N -0.550 5.550 14 Si 0.776 3.224 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.038 3.962 19 C -0.161 4.161 20 C -0.093 4.093 21 C -0.186 4.186 22 C -0.068 4.068 23 N -0.223 5.223 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.160 0.840 38 H 0.186 0.814 39 H 0.204 0.796 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.139 -5.167 2.378 6.076 hybrid contribution -1.293 1.852 -0.888 2.427 sum 0.846 -3.315 1.489 3.731 Atomic orbital electron populations 1.23454 0.78639 1.05154 1.01732 1.88044 1.22283 1.27574 1.93903 1.22755 0.93485 0.83941 0.85238 1.88046 1.33010 1.81111 1.29110 1.23183 0.84903 0.99423 0.99815 1.19859 0.85812 0.83606 0.79379 1.90597 1.73215 1.30070 1.50296 1.48121 1.15067 1.10847 1.56656 1.19574 0.95232 0.79057 0.94662 1.21652 1.35969 1.04245 0.97218 0.92820 1.25533 0.96614 0.97866 0.97144 1.70016 1.45274 1.19520 1.20200 0.85737 0.79122 0.78053 0.79534 1.19674 1.20814 1.19898 1.20272 0.79480 1.03445 0.92986 1.21261 0.99146 0.95000 1.00725 1.21814 0.93777 1.00121 0.93566 1.22478 0.98807 0.98363 0.98992 1.23369 0.97299 0.89376 0.96784 1.67708 1.08250 1.39638 1.06656 1.22662 0.93336 0.94898 0.94392 0.92820 0.86985 0.91696 0.89512 0.88589 0.93275 0.91321 0.92300 0.95968 0.92355 0.88218 0.89641 0.84041 0.81360 0.79606 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 10.69 113.37 1.21 1.35 16 2 O -0.40 -15.15 10.11 -119.31 -1.21 -16.35 16 3 C 0.24 9.94 2.47 71.23 0.18 10.11 16 4 O -0.39 -15.79 7.99 -126.21 -1.01 -16.80 16 5 C 0.02 0.68 9.89 113.37 1.12 1.80 16 6 C 0.53 23.55 7.44 87.66 0.65 24.21 16 7 O -0.56 -26.68 15.54 15.98 0.25 -26.43 16 8 N -0.58 -24.65 2.44 -830.49 -2.03 -26.67 16 9 C 0.23 10.97 4.93 85.63 0.42 11.39 16 10 C -0.55 -27.25 9.39 25.60 0.24 -27.01 16 11 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 12 C 0.03 1.47 5.46 84.65 0.46 1.93 16 13 N -0.91 -47.33 13.29 21.45 0.28 -47.05 16 14 Si 0.95 39.40 29.54 68.60 2.03 41.43 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 C 0.16 5.95 5.54 85.63 0.47 6.42 16 19 C -0.16 -5.51 5.48 -19.77 -0.11 -5.62 16 20 C -0.07 -2.02 9.86 22.47 0.22 -1.80 16 21 C -0.17 -4.18 10.11 22.36 0.23 -3.96 16 22 C 0.09 2.36 11.18 84.68 0.95 3.30 16 23 N -0.51 -17.41 10.36 -195.84 -2.03 -19.44 16 24 C 0.10 3.76 10.85 84.67 0.92 4.68 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 1.50 4.61 -2.39 -0.01 1.49 16 28 H 0.09 3.50 7.60 -2.39 -0.02 3.48 16 29 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 30 H 0.05 1.53 7.85 -2.38 -0.02 1.51 16 31 H 0.07 1.73 5.89 -2.39 -0.01 1.72 16 32 H 0.06 2.92 4.90 -2.39 -0.01 2.91 16 33 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 34 H 0.27 13.23 8.31 -92.70 -0.77 12.46 16 35 H 0.10 3.46 8.03 -2.39 -0.02 3.44 16 36 H 0.09 3.11 7.41 -2.38 -0.02 3.09 16 37 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.14 5.47 7.51 -2.91 -0.02 5.44 16 Total: -1.00 -64.45 340.47 4.30 -60.15 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.05 Total: 24.34 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 6.97 Total: 26.82 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.77 Total: -93.16 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -1.97 Total: -59.58 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -64.45 4.30 -60.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709520572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.763 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds