Wall clock time and date at job start Tue Mar 31 2020 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.09002 * 109.49679 * 58.58857 * 13 12 11 15 15 C 1.52999 * 109.49995 * 178.68217 * 13 12 11 16 16 N 1.46499 * 109.47477 * 184.99769 * 15 13 12 17 17 C 1.34774 * 120.00141 * 179.97438 * 16 15 13 18 18 O 1.21667 * 119.99944 * 0.02562 * 17 16 15 19 19 C 1.46731 * 120.00278 * 180.02562 * 17 16 15 20 20 N 1.29712 * 126.53832 * 359.68397 * 19 17 16 21 21 N 1.39162 * 112.70781 * 179.82812 * 20 19 17 22 22 C 1.34862 * 111.30078 * 0.46635 * 21 20 19 23 23 O 1.21244 * 127.30468 * 179.71441 * 22 21 20 24 24 C 1.51443 * 126.54750 * 180.02562 * 19 17 16 25 25 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 28 28 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 29 29 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 30 30 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 31 31 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 32 32 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 33 33 H 1.08995 * 109.47509 * 305.00452 * 15 13 12 34 34 H 1.09002 * 109.47153 * 65.00113 * 15 13 12 35 35 H 0.97002 * 120.00054 * 0.02562 * 16 15 13 36 36 H 0.97000 * 124.35018 * 180.19265 * 21 20 19 37 37 H 1.08999 * 110.58050 * 298.54564 * 24 19 17 38 38 H 1.09003 * 110.58120 * 61.44451 * 24 19 17 39 39 H 1.08998 * 109.58974 * 246.20756 * 25 9 7 40 40 H 1.09003 * 109.58500 * 6.62795 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9022 -4.2538 1.5634 15 6 2.3995 -6.0054 0.4133 16 7 3.6656 -5.9488 -0.3216 17 6 4.1605 -7.0620 -0.8982 18 8 3.5555 -8.1138 -0.8087 19 6 5.4288 -7.0054 -1.6338 20 7 6.1717 -5.9573 -1.8127 21 7 7.3176 -6.2311 -2.5534 22 6 7.3687 -7.5293 -2.9148 23 8 8.2322 -8.0773 -3.5660 24 6 6.1167 -8.1579 -2.3352 25 6 1.8101 -3.6522 -0.2026 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3343 1.6686 28 1 -0.6775 -2.6380 0.7359 29 1 1.3472 -2.9679 2.9994 30 1 -0.3830 -3.3838 3.0535 31 1 0.9812 -5.4055 2.6500 32 1 -0.0282 -5.0408 1.2302 33 1 2.4896 -6.7120 1.2383 34 1 1.6042 -6.3299 -0.2577 35 1 4.1481 -5.1103 -0.3927 36 1 7.9908 -5.5719 -2.7838 37 1 6.3759 -8.9406 -1.6223 38 1 5.4845 -8.5556 -3.1292 39 1 1.0336 -4.0574 -0.8513 40 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748322689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:23 Heat of formation + Delta-G solvation = -2.059279 kcal Electronic energy + Delta-G solvation = -23330.763165 eV Core-core repulsion = 19761.240174 eV Total energy + Delta-G solvation = -3569.522991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65246 -39.74193 -37.96534 -37.66768 -35.02670 -33.15764 -32.33461 -30.54300 -30.44664 -29.57052 -26.19578 -25.32147 -23.73726 -22.11538 -21.94907 -21.00992 -20.21766 -19.07623 -18.29789 -17.44412 -16.77866 -16.68606 -16.02930 -15.43191 -15.15658 -15.01568 -14.83822 -14.34381 -14.09335 -13.74054 -13.48462 -13.26460 -12.84958 -12.71549 -12.40247 -12.29723 -12.22943 -11.74012 -11.35492 -11.05130 -10.76826 -10.71931 -10.56822 -10.35256 -10.28049 -10.20968 -9.96248 -9.64469 -9.61579 -9.47491 -9.13979 -8.49843 -6.71271 -5.82826 -3.26352 0.46320 1.90603 2.08323 2.65924 2.86224 3.35140 3.41511 3.42087 3.43175 3.98656 4.28753 4.44717 4.78126 4.94979 5.04524 5.22042 5.26970 5.36750 5.40135 5.56378 5.75114 5.82450 5.91715 6.07676 6.15875 6.18702 6.29572 6.33386 6.54456 6.64276 6.71034 6.76379 6.80517 6.90227 7.30147 7.35973 7.37311 7.63781 7.75048 7.87208 8.40852 9.16974 9.80200 10.36851 11.25343 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.003638 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.894454 B = 7694.192847 C = 9153.602818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.168 3.832 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.119 4.119 14 H 0.075 0.925 15 C 0.124 3.876 16 N -0.698 5.698 17 C 0.592 3.408 18 O -0.523 6.523 19 C 0.057 3.943 20 N -0.176 5.176 21 N -0.563 5.563 22 C 0.504 3.496 23 O -0.493 6.493 24 C -0.151 4.151 25 C 0.152 3.848 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.440 0.560 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.020 0.980 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -13.148 0.182 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.140 4.140 14 H 0.094 0.906 15 C 0.001 3.999 16 N -0.350 5.350 17 C 0.374 3.626 18 O -0.397 6.397 19 C -0.137 4.137 20 N 0.008 4.992 21 N -0.313 5.313 22 C 0.290 3.710 23 O -0.364 6.364 24 C -0.193 4.193 25 C 0.025 3.975 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.249 0.751 36 H 0.287 0.713 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.484 -13.118 0.024 15.622 hybrid contribution 1.012 0.973 -0.388 1.456 sum 9.496 -12.145 -0.364 15.421 Atomic orbital electron populations 1.70024 1.05285 1.25672 1.53583 1.25045 0.95260 0.98418 1.00727 0.86385 0.78941 0.83385 0.78133 1.20880 1.21630 1.21005 1.19124 0.92501 0.84821 1.42133 0.91735 1.44036 1.35977 1.01367 1.49926 1.20803 0.88540 0.98336 0.88058 1.22166 1.00154 0.95924 0.99835 1.21336 0.96618 0.97830 0.97942 1.22066 0.99067 0.93313 0.99565 0.90619 1.21643 0.83952 0.98656 0.95619 1.46014 1.24749 1.11460 1.52755 1.16511 0.82190 0.84703 0.79241 1.90887 1.58989 1.29532 1.60287 1.25010 0.96529 0.92690 0.99504 1.75594 0.94235 1.24426 1.04959 1.47671 1.21208 1.11445 1.50935 1.21327 0.87538 0.82879 0.79288 1.90836 1.40016 1.67541 1.37993 1.21860 0.95502 0.98836 1.03134 1.21008 0.97587 0.86914 0.91961 0.93541 0.89591 0.96401 0.92720 0.93138 0.93343 0.92378 0.91224 0.90826 0.75094 0.71328 0.83729 0.83652 0.96221 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 2 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 21.06 29.59 -169.99 -5.03 16.04 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.72 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.65 7.89 -52.48 -0.41 1.23 16 9 N -0.59 -13.94 2.99 -172.05 -0.51 -14.45 16 10 C 0.17 3.82 5.30 -3.71 -0.02 3.80 16 11 C -0.14 -2.51 6.08 -26.61 -0.16 -2.67 16 12 C -0.10 -1.49 5.16 -26.69 -0.14 -1.63 16 13 C -0.12 -1.78 2.38 -90.28 -0.22 -1.99 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.12 1.55 5.06 -4.04 -0.02 1.53 16 16 N -0.70 -8.11 5.33 -61.61 -0.33 -8.44 16 17 C 0.59 6.89 7.79 -12.83 -0.10 6.79 16 18 O -0.52 -7.37 16.98 5.22 0.09 -7.28 16 19 C 0.06 0.55 7.39 -79.69 -0.59 -0.04 16 20 N -0.18 -1.73 11.99 35.12 0.42 -1.31 16 21 N -0.56 -4.94 7.11 31.47 0.22 -4.71 16 22 C 0.50 4.96 8.89 -10.50 -0.09 4.86 16 23 O -0.49 -6.37 18.02 5.59 0.10 -6.27 16 24 C -0.15 -1.21 6.76 -28.22 -0.19 -1.41 16 25 C 0.15 2.87 5.63 -3.48 -0.02 2.85 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 28 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.41 4.62 7.42 -40.82 -0.30 4.32 16 36 H 0.44 2.95 8.96 -183.30 -1.64 1.31 16 37 H 0.15 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.15 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.94 7.16 -51.93 -0.37 0.56 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -31.44 334.84 -7.98 -39.42 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.83 Total: 1.56 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.78 Total: 5.28 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.42 Total: -53.80 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.19 Total: -13.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.44 -7.98 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748322689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.360 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds