Wall clock time and date at job start Tue Mar 31 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47137 * 239.99936 * 3 2 1 5 5 H 1.48496 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46625 * 120.00033 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00531 * 163.08586 * 7 2 1 9 9 N 1.36936 * 119.99782 * 343.08514 * 7 2 1 10 10 C 1.46927 * 120.63328 * 331.83092 * 9 7 2 11 11 C 1.53186 * 108.77479 * 233.58439 * 10 9 7 12 12 C 1.53043 * 109.31437 * 305.36434 * 11 10 9 13 13 C 1.53032 * 109.53877 * 61.36566 * 12 11 10 14 14 H 1.09002 * 109.49679 * 58.58857 * 13 12 11 15 15 C 1.52999 * 109.49995 * 178.68217 * 13 12 11 16 16 N 1.46499 * 109.47477 * 184.99769 * 15 13 12 17 17 C 1.34774 * 120.00141 * 179.97438 * 16 15 13 18 18 O 1.21667 * 119.99944 * 0.02562 * 17 16 15 19 19 C 1.46731 * 120.00278 * 180.02562 * 17 16 15 20 20 N 1.29712 * 126.53832 * 359.68397 * 19 17 16 21 21 N 1.39162 * 112.70781 * 179.82812 * 20 19 17 22 22 C 1.34862 * 111.30078 * 0.46635 * 21 20 19 23 23 O 1.21244 * 127.30468 * 179.71441 * 22 21 20 24 24 C 1.51443 * 126.54750 * 180.02562 * 19 17 16 25 25 C 1.46933 * 120.63148 * 151.54973 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58266 * 353.37584 * 10 9 7 28 28 H 1.09008 * 109.58073 * 113.65523 * 10 9 7 29 29 H 1.08996 * 109.50109 * 65.31494 * 11 10 9 30 30 H 1.09007 * 109.49432 * 185.38366 * 11 10 9 31 31 H 1.09003 * 109.45993 * 181.38826 * 12 11 10 32 32 H 1.08997 * 109.45947 * 301.35843 * 12 11 10 33 33 H 1.08995 * 109.47509 * 305.00452 * 15 13 12 34 34 H 1.09002 * 109.47153 * 65.00113 * 15 13 12 35 35 H 0.97002 * 120.00054 * 0.02562 * 16 15 13 36 36 H 0.97000 * 124.35018 * 180.19265 * 21 20 19 37 37 H 1.08999 * 110.58050 * 298.54564 * 24 19 17 38 38 H 1.09003 * 110.58120 * 61.44451 * 24 19 17 39 39 H 1.08998 * 109.58974 * 246.20756 * 25 9 7 40 40 H 1.09003 * 109.58500 * 6.62795 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3700 -2.3621 0.3461 10 6 0.2261 -2.3399 1.2679 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8358 13 6 2.0672 -4.6174 0.9645 14 1 2.9022 -4.2538 1.5634 15 6 2.3995 -6.0054 0.4133 16 7 3.6656 -5.9488 -0.3216 17 6 4.1605 -7.0620 -0.8982 18 8 3.5555 -8.1138 -0.8087 19 6 5.4288 -7.0054 -1.6338 20 7 6.1717 -5.9573 -1.8127 21 7 7.3176 -6.2311 -2.5534 22 6 7.3687 -7.5293 -2.9148 23 8 8.2322 -8.0773 -3.5660 24 6 6.1167 -8.1579 -2.3352 25 6 1.8101 -3.6522 -0.2026 26 1 -0.4850 0.8400 -0.0004 27 1 0.0993 -1.3343 1.6686 28 1 -0.6775 -2.6380 0.7359 29 1 1.3472 -2.9679 2.9994 30 1 -0.3830 -3.3838 3.0535 31 1 0.9812 -5.4055 2.6500 32 1 -0.0282 -5.0408 1.2302 33 1 2.4896 -6.7120 1.2383 34 1 1.6042 -6.3299 -0.2577 35 1 4.1481 -5.1103 -0.3927 36 1 7.9908 -5.5719 -2.7838 37 1 6.3759 -8.9406 -1.6223 38 1 5.4845 -8.5556 -3.1292 39 1 1.0336 -4.0574 -0.8513 40 1 2.7289 -3.5126 -0.7723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748322689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:22 Heat of formation + Delta-G solvation = -25.517027 kcal Electronic energy + Delta-G solvation = -23331.780369 eV Core-core repulsion = 19761.240174 eV Total energy + Delta-G solvation = -3570.540195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42954 -40.72338 -39.30535 -38.60717 -36.30612 -34.70681 -33.20019 -32.25694 -31.81805 -30.36044 -27.40962 -27.11053 -24.77848 -23.73620 -22.69520 -22.37146 -21.27429 -20.42199 -19.07792 -18.66771 -18.21616 -17.53256 -17.04153 -16.80011 -16.44007 -15.93394 -15.82979 -15.70515 -15.43563 -15.01511 -14.95397 -14.47490 -14.10802 -13.96616 -13.70942 -13.52003 -13.34755 -12.99000 -12.83276 -12.49992 -12.43564 -12.28308 -11.96022 -11.77778 -11.70766 -11.50296 -11.32355 -11.09199 -11.01979 -10.50104 -10.42424 -10.09178 -8.63636 -7.84338 -5.30047 -0.33164 1.13182 1.34422 1.48492 1.50715 1.56984 1.80521 1.98905 2.53120 2.69941 3.20194 3.30509 3.52800 3.64490 4.03092 4.06970 4.11493 4.21742 4.25268 4.46938 4.61163 4.64112 4.67432 4.82654 4.93429 4.96611 5.04700 5.17108 5.21388 5.36016 5.40691 5.41450 5.49692 5.61239 5.70716 5.83555 5.97656 6.38727 6.42766 6.64853 6.94938 7.18316 7.90457 8.41558 9.21351 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.003638 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.894454 B = 7694.192847 C = 9153.602818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.172 3.828 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.103 4.103 14 H 0.077 0.923 15 C 0.134 3.866 16 N -0.698 5.698 17 C 0.598 3.402 18 O -0.546 6.546 19 C 0.059 3.941 20 N -0.183 5.183 21 N -0.555 5.555 22 C 0.505 3.495 23 O -0.527 6.527 24 C -0.145 4.145 25 C 0.149 3.851 26 H 0.248 0.752 27 H 0.048 0.952 28 H -0.007 1.007 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.448 0.552 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.010 0.990 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 -14.575 0.865 17.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.134 4.134 13 C -0.123 4.123 14 H 0.096 0.904 15 C 0.011 3.989 16 N -0.349 5.349 17 C 0.381 3.619 18 O -0.421 6.421 19 C -0.135 4.135 20 N 0.001 4.999 21 N -0.305 5.305 22 C 0.293 3.707 23 O -0.401 6.401 24 C -0.187 4.187 25 C 0.024 3.976 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.296 0.704 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.028 0.972 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.709 -14.548 0.715 17.505 hybrid contribution 0.621 1.417 -0.624 1.668 sum 10.330 -13.131 0.092 16.708 Atomic orbital electron populations 1.70185 1.06711 1.25775 1.55548 1.25772 0.95941 1.01444 1.01434 0.85406 0.77588 0.79487 0.78354 1.20140 1.22392 1.20356 1.19507 0.92912 0.86018 1.40727 0.91250 1.44311 1.35941 1.02356 1.50661 1.20639 0.87688 0.97754 0.89316 1.21995 1.00886 0.96161 0.97916 1.21333 0.96531 0.96592 0.98971 1.21820 0.99206 0.93546 0.97737 0.90446 1.21481 0.84243 0.97052 0.96137 1.45983 1.24508 1.11712 1.52688 1.16567 0.82391 0.84136 0.78818 1.90883 1.59796 1.30259 1.61157 1.24790 0.95879 0.93428 0.99389 1.75594 0.94537 1.24613 1.05191 1.47700 1.20996 1.11570 1.50241 1.21533 0.87547 0.83023 0.78618 1.90825 1.41396 1.68206 1.39704 1.21939 0.94469 0.98552 1.03708 1.21163 0.97144 0.85773 0.93541 0.94256 0.93310 0.98888 0.92942 0.91346 0.89778 0.92367 0.89444 0.91141 0.74797 0.70383 0.81766 0.82060 0.97238 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.66 11.20 21.65 0.24 -54.42 16 2 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 3 Si 0.96 43.81 29.59 68.60 2.03 45.84 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.26 -13.79 9.58 84.03 0.81 -12.99 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -28.93 2.99 -698.24 -2.09 -31.02 16 10 C 0.17 7.95 5.30 86.36 0.46 8.41 16 11 C -0.13 -4.45 6.08 30.67 0.19 -4.27 16 12 C -0.10 -2.62 5.16 30.62 0.16 -2.46 16 13 C -0.10 -2.81 2.38 -10.57 -0.03 -2.84 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.13 2.96 5.06 86.38 0.44 3.40 16 16 N -0.70 -14.52 5.33 -467.06 -2.49 -17.01 16 17 C 0.60 12.50 7.79 86.46 0.67 13.18 16 18 O -0.55 -14.02 16.98 -4.24 -0.07 -14.09 16 19 C 0.06 1.01 7.39 45.33 0.34 1.35 16 20 N -0.18 -3.24 11.99 -42.79 -0.51 -3.75 16 21 N -0.55 -8.82 7.11 -172.70 -1.23 -10.05 16 22 C 0.51 9.14 8.89 87.94 0.78 9.92 16 23 O -0.53 -13.14 18.02 -2.92 -0.05 -13.19 16 24 C -0.15 -1.98 6.76 29.63 0.20 -1.78 16 25 C 0.15 5.52 5.63 86.51 0.49 6.00 16 26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.05 2.60 6.06 -2.39 -0.01 2.59 16 28 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 8.38 7.42 -92.71 -0.69 7.69 16 36 H 0.45 5.40 8.96 -213.92 -1.92 3.48 16 37 H 0.17 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.05 1.96 7.16 -2.39 -0.02 1.94 16 Total: -1.00 -68.68 334.84 -0.78 -69.46 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -1.52 Total: 12.65 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 4.91 Total: 15.57 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.07 Total: -116.24 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.12 Total: -27.28 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.68 -0.78 -69.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748322689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.940 kcal (2) G-P(sol) polarization free energy of solvation -68.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds