Wall clock time and date at job start Tue Mar 31 2020 03:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47462 * 2 1 4 4 C 1.42897 * 114.00200 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46945 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47620 * 64.99710 * 5 4 3 7 7 C 1.42899 * 114.00394 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47309 * 180.02562 * 7 6 5 9 9 O 1.21271 * 120.00190 * 3.66977 * 8 7 6 10 10 N 1.34780 * 120.00223 * 183.66590 * 8 7 6 11 11 C 1.37213 * 119.99935 * 5.09826 * 10 8 7 12 12 H 1.07999 * 119.99768 * 305.39612 * 11 10 8 13 13 C 1.38897 * 120.00039 * 125.38735 * 11 10 8 14 14 N 1.31413 * 119.99648 * 163.34082 * 13 11 10 15 15 Si 1.86800 * 120.00138 * 343.34059 * 13 11 10 16 16 H 1.48497 * 109.46778 * 93.92308 * 15 13 11 17 17 H 1.48500 * 109.46956 * 213.92801 * 15 13 11 18 18 H 1.48503 * 109.46771 * 333.92583 * 15 13 11 19 19 C 1.39423 * 120.00028 * 185.09484 * 10 8 7 20 20 C 1.39070 * 119.69730 * 185.00319 * 19 10 8 21 21 C 1.38371 * 119.10167 * 180.02562 * 20 19 10 22 22 C 1.38826 * 118.49147 * 0.02562 * 21 20 19 23 23 C 1.38147 * 119.31197 * 0.24831 * 22 21 20 24 24 N 1.31878 * 120.84737 * 359.48194 * 23 22 21 25 25 H 1.08998 * 109.47375 * 300.00900 * 1 2 3 26 26 H 1.08997 * 109.46642 * 60.00195 * 1 2 3 27 27 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47375 * 239.99100 * 2 1 3 29 29 H 1.09009 * 109.46677 * 119.99403 * 2 1 3 30 30 H 1.08993 * 109.47167 * 59.99311 * 4 3 2 31 31 H 1.09001 * 109.46800 * 299.99402 * 4 3 2 32 32 H 1.09001 * 109.47288 * 304.99208 * 5 4 3 33 33 H 1.09007 * 109.46782 * 184.99676 * 5 4 3 34 34 H 1.09003 * 109.47182 * 59.99573 * 7 6 5 35 35 H 1.09002 * 109.46676 * 299.99984 * 7 6 5 36 36 H 0.96995 * 119.99858 * 180.02562 * 14 13 11 37 37 H 1.08002 * 120.44757 * 0.04480 * 20 19 10 38 38 H 1.08001 * 120.75477 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.34568 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.57352 * 179.74987 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 8 3.3986 3.5458 1.2197 7 6 3.7194 4.9346 1.3212 8 6 3.2261 5.4690 2.6410 9 8 2.7157 4.7194 3.4461 10 7 3.3523 6.7801 2.9268 11 6 3.8331 7.6461 1.9773 12 1 4.7838 7.4532 1.5026 13 6 3.0970 8.7705 1.6264 14 7 3.6746 9.7588 0.9810 15 14 1.2861 8.8778 2.0718 16 1 1.1360 9.5914 3.3654 17 1 0.5583 9.6186 1.0103 18 1 0.7244 7.5085 2.1938 19 6 2.9941 7.2565 4.1872 20 6 3.0275 8.6232 4.4423 21 6 2.6701 9.0824 5.6977 22 6 2.2906 8.1552 6.6588 23 6 2.2860 6.8116 6.3377 24 7 2.6268 6.4036 5.1308 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8333 0.9765 -0.8907 31 1 3.8340 0.9764 0.8892 32 1 3.3494 3.4411 -0.8430 33 1 4.9083 3.0253 -0.0911 34 1 3.2407 5.4785 0.5068 35 1 4.7999 5.0634 1.2584 36 1 3.1607 10.5442 0.7363 37 1 3.3281 9.3167 3.6709 38 1 2.6860 10.1381 5.9248 39 1 2.0062 8.4806 7.6486 40 1 1.9954 6.0864 7.0833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:16 Heat of formation + Delta-G solvation = -60.458738 kcal Electronic energy + Delta-G solvation = -23722.888039 eV Core-core repulsion = 20118.539907 eV Total energy + Delta-G solvation = -3604.348132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10317 -38.52697 -37.97463 -36.68539 -35.10667 -32.44116 -31.83539 -31.49126 -29.99956 -29.15036 -26.72292 -25.33172 -22.80234 -22.79582 -22.36399 -22.06025 -19.43877 -18.39541 -16.98104 -16.68231 -16.30495 -16.04666 -15.56376 -15.41939 -15.22061 -14.84429 -14.58147 -14.20708 -13.82792 -13.67123 -13.34669 -13.06612 -12.82684 -12.64203 -12.44552 -12.36132 -11.87380 -11.73609 -11.51962 -11.37589 -11.23514 -11.05435 -10.79459 -10.58622 -10.24795 -9.65075 -9.57680 -9.28977 -9.21750 -9.15143 -8.70788 -8.14920 -7.24257 -6.69122 -4.57700 1.87064 2.06673 3.05191 3.16418 3.28422 3.50094 3.63773 3.70142 4.00304 4.38311 4.59797 4.83991 4.98114 5.04079 5.23731 5.25864 5.30152 5.30697 5.46377 5.46552 5.50100 5.69977 5.72149 5.78490 5.82474 5.87668 5.88836 5.96884 6.06611 6.09407 6.13795 6.54279 6.72601 6.92750 7.15541 7.23573 7.42518 7.55701 7.90789 8.04925 8.58147 8.77849 9.10722 9.51194 10.35110 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.004433 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.724747 B = 6315.454657 C = 7034.076431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.067 3.933 5 C 0.063 3.937 6 O -0.363 6.363 7 C 0.063 3.937 8 C 0.500 3.500 9 O -0.493 6.493 10 N -0.410 5.410 11 C -0.373 4.373 12 H 0.112 0.888 13 C 0.088 3.912 14 N -0.847 5.847 15 Si 0.857 3.143 16 H -0.253 1.253 17 H -0.279 1.279 18 H -0.261 1.261 19 C 0.362 3.638 20 C -0.201 4.201 21 C -0.062 4.062 22 C -0.234 4.234 23 C 0.118 3.882 24 N -0.491 5.491 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.281 0.719 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 -9.137 -0.990 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.297 6.297 4 C -0.009 4.009 5 C -0.015 4.015 6 O -0.281 6.281 7 C -0.017 4.017 8 C 0.288 3.712 9 O -0.365 6.365 10 N -0.126 5.126 11 C -0.499 4.499 12 H 0.129 0.871 13 C -0.123 4.123 14 N -0.479 5.479 15 Si 0.681 3.319 16 H -0.178 1.178 17 H -0.205 1.205 18 H -0.185 1.185 19 C 0.132 3.868 20 C -0.225 4.225 21 C -0.088 4.088 22 C -0.256 4.256 23 C -0.041 4.041 24 N -0.206 5.206 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.170 0.830 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.418 -10.259 -0.861 10.392 hybrid contribution -0.471 1.238 0.006 1.324 sum -1.889 -9.021 -0.855 9.256 Atomic orbital electron populations 1.21733 0.93891 1.01862 1.03412 1.22428 0.95697 0.84216 0.99630 1.88022 1.20628 1.25769 1.95296 1.22497 0.82114 0.95879 1.00457 1.22496 0.98233 0.92391 0.88338 1.88006 1.80924 1.22238 1.36977 1.22041 1.00331 0.82053 0.97233 1.20528 0.80028 0.82568 0.88078 1.90693 1.40153 1.56811 1.48834 1.41445 1.56247 1.07037 1.07823 1.19001 1.06821 1.05695 1.18385 0.87102 1.25466 0.98367 0.94684 0.93765 1.69724 1.36925 1.05334 1.35885 0.87249 0.84825 0.80471 0.79379 1.17794 1.20539 1.18463 1.19188 0.92220 0.88969 0.86408 1.21925 1.05530 0.95923 0.99102 1.21259 0.95525 0.99453 0.92548 1.21796 1.08608 0.94798 1.00432 1.22485 0.94918 0.93859 0.92863 1.67703 1.14437 1.37807 1.00702 0.91555 0.91961 0.91390 0.93842 0.93486 0.92143 0.92442 0.92400 0.91835 0.89648 0.90659 0.90861 0.83010 0.85714 0.86029 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.22 16 2 C 0.06 0.66 6.66 37.16 0.25 0.91 16 3 O -0.38 -5.85 10.31 -40.09 -0.41 -6.26 16 4 C 0.07 0.88 6.32 37.16 0.23 1.11 16 5 C 0.06 0.91 6.32 37.16 0.23 1.15 16 6 O -0.36 -7.30 9.84 -59.71 -0.59 -7.88 16 7 C 0.06 1.29 5.25 36.00 0.19 1.47 16 8 C 0.50 12.53 7.66 -10.99 -0.08 12.44 16 9 O -0.49 -13.62 14.80 -14.32 -0.21 -13.84 16 10 N -0.41 -10.41 2.10 -60.71 -0.13 -10.54 16 11 C -0.37 -9.42 8.05 -14.90 -0.12 -9.54 16 12 H 0.11 2.83 7.97 -52.49 -0.42 2.41 16 13 C 0.09 2.23 3.80 -17.49 -0.07 2.16 16 14 N -0.85 -21.78 13.96 55.49 0.77 -21.00 16 15 Si 0.86 20.47 24.80 -169.99 -4.22 16.25 16 16 H -0.25 -5.82 6.15 56.52 0.35 -5.47 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.36 9.03 6.05 -154.65 -0.94 8.09 16 20 C -0.20 -4.59 6.06 -39.22 -0.24 -4.83 16 21 C -0.06 -1.18 10.16 -39.31 -0.40 -1.58 16 22 C -0.23 -4.11 10.11 -39.40 -0.40 -4.51 16 23 C 0.12 2.33 11.18 -17.56 -0.20 2.13 16 24 N -0.49 -11.99 7.92 -12.34 -0.10 -12.09 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.70 7.92 -51.93 -0.41 1.29 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.15 3.62 4.81 -52.49 -0.25 3.37 16 38 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -32.59 336.60 -6.72 -39.31 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.77 Total: 3.18 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -1.15 Total: 7.79 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.55 Total: -43.63 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.21 Total: -27.98 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.22 Total: 16.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.59 -6.72 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.146 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds