Wall clock time and date at job start Tue Mar 31 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34324 * 126.60019 * 2 1 4 4 C 1.50702 * 126.60085 * 359.71583 * 3 2 1 5 5 C 1.47961 * 106.79424 * 179.73794 * 3 2 1 6 6 O 1.21396 * 125.79773 * 179.97438 * 5 3 2 7 7 N 1.34520 * 108.40996 * 0.02562 * 5 3 2 8 8 C 1.46501 * 125.20701 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47321 * 89.99604 * 8 7 5 10 10 C 1.50691 * 109.47287 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00316 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99948 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99982 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46971 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46931 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00583 * 0.02562 * 15 14 13 17 17 C 1.37888 * 119.99973 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99805 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99910 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47273 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46823 * 120.00367 * 19 17 15 22 22 H 1.48499 * 109.47252 * 240.00253 * 19 17 15 23 23 C 1.34521 * 109.59101 * 359.97438 * 7 5 3 24 24 O 1.21398 * 125.79619 * 180.02562 * 23 7 5 25 25 H 1.08996 * 109.47507 * 90.00091 * 1 2 3 26 26 H 1.09007 * 109.46838 * 209.99987 * 1 2 3 27 27 H 1.09004 * 109.47500 * 329.99491 * 1 2 3 28 28 H 1.08999 * 109.47129 * 90.00328 * 4 3 2 29 29 H 1.08998 * 109.46823 * 209.99937 * 4 3 2 30 30 H 1.08999 * 109.47564 * 330.00289 * 4 3 2 31 31 H 1.08999 * 109.47489 * 210.00580 * 8 7 5 32 32 H 1.09001 * 109.46892 * 329.99913 * 8 7 5 33 33 H 1.08994 * 109.47196 * 300.00732 * 9 8 7 34 34 H 1.09000 * 109.46199 * 60.00010 * 9 8 7 35 35 H 0.97004 * 120.00130 * 0.02562 * 12 10 9 36 36 H 1.09002 * 109.47438 * 300.00319 * 13 12 10 37 37 H 1.08996 * 109.46983 * 60.00899 * 13 12 10 38 38 H 1.08999 * 109.47126 * 299.99689 * 14 13 12 39 39 H 1.09001 * 109.47389 * 60.00211 * 14 13 12 40 40 H 0.96994 * 120.00091 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0784 0.0000 4 6 1.8724 2.5211 -0.0060 5 6 3.7000 0.5770 0.0065 6 8 4.7017 1.2628 0.0078 7 7 3.6672 -0.7678 0.0095 8 6 4.8433 -1.6413 0.0165 9 6 5.2466 -1.9420 1.4615 10 6 6.4560 -2.8410 1.4687 11 8 6.9473 -3.2051 0.4213 12 7 6.9922 -3.2397 2.6391 13 6 8.1683 -4.1133 2.6462 14 6 8.5715 -4.4140 4.0911 15 6 9.7816 -5.3121 4.0983 16 1 10.2196 -5.6357 3.1657 17 6 10.3304 -5.7200 5.2958 18 7 9.7974 -5.3256 6.4315 19 14 11.8299 -6.8338 5.3047 20 1 12.2332 -7.1322 3.9071 21 1 12.9475 -6.1536 6.0075 22 1 11.5016 -8.1004 6.0069 23 6 2.3892 -1.1878 0.0061 24 8 2.0221 -2.3450 0.0080 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.7633 2.8720 1.0202 29 1 2.6214 3.1245 -0.5186 30 1 0.9174 2.6102 -0.5238 31 1 4.6066 -2.5736 -0.4963 32 1 5.6678 -1.1446 -0.4950 33 1 5.4833 -1.0097 1.9741 34 1 4.4220 -2.4386 1.9728 35 1 6.5995 -2.9483 3.4769 36 1 7.9314 -5.0458 2.1338 37 1 8.9927 -3.6168 2.1345 38 1 8.8084 -3.4818 4.6038 39 1 7.7470 -4.9107 4.6026 40 1 10.1831 -5.6127 7.2739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907322311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:26 Heat of formation + Delta-G solvation = -109.384045 kcal Electronic energy + Delta-G solvation = -22547.422281 eV Core-core repulsion = 18940.952589 eV Total energy + Delta-G solvation = -3606.469693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44081 -40.80496 -39.87214 -37.47967 -36.84559 -36.31729 -34.86873 -33.07281 -31.46866 -30.76483 -28.37339 -26.71633 -25.52129 -24.76284 -22.88684 -21.58245 -21.20870 -20.88454 -18.87854 -18.46997 -17.86435 -17.54057 -17.13948 -16.74030 -16.71528 -16.52042 -16.35107 -15.50354 -15.26705 -14.80693 -14.57860 -14.47126 -14.37397 -14.26606 -14.24846 -13.74601 -13.54609 -13.42222 -13.25094 -13.01591 -12.98054 -12.54694 -12.52102 -12.27686 -11.77135 -11.71576 -11.48956 -11.38132 -11.23927 -10.89539 -10.63904 -10.27415 -10.09657 -8.26995 -6.37509 -1.01655 1.11202 1.39272 1.40224 1.43928 1.51334 1.53429 1.59546 2.22535 2.43011 2.64297 3.05478 3.07840 3.51897 3.69903 3.77221 3.95826 4.05265 4.22736 4.29373 4.39602 4.47590 4.47785 4.51759 4.70108 4.79832 4.81528 4.84584 4.87733 5.01677 5.18401 5.22543 5.33001 5.44536 5.51636 5.54341 5.75301 6.04802 6.12858 6.42772 6.50716 6.75872 7.15066 7.31973 8.85160 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.033300 B = 0.002369 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.631661 B =11818.148205 C =11944.830344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.116 4.116 3 C -0.116 4.116 4 C -0.095 4.095 5 C 0.543 3.457 6 O -0.485 6.485 7 N -0.593 5.593 8 C 0.132 3.868 9 C -0.144 4.144 10 C 0.514 3.486 11 O -0.586 6.586 12 N -0.716 5.716 13 C 0.139 3.861 14 C 0.022 3.978 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.543 3.457 24 O -0.485 6.485 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.412 0.588 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.150 17.203 -11.714 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.151 4.151 5 C 0.334 3.666 6 O -0.357 6.357 7 N -0.335 5.335 8 C 0.011 3.989 9 C -0.184 4.184 10 C 0.301 3.699 11 O -0.467 6.467 12 N -0.366 5.366 13 C 0.016 3.984 14 C -0.016 4.016 15 C -0.585 4.585 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.202 1.202 23 C 0.334 3.666 24 O -0.357 6.357 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.350 16.609 -12.266 30.428 hybrid contribution 1.265 -0.939 0.706 1.727 sum -21.085 15.670 -11.560 28.701 Atomic orbital electron populations 1.20653 0.84135 1.05413 1.04912 1.23162 0.99129 0.89921 0.99782 1.23162 0.89497 0.99554 0.99776 1.20652 1.03567 0.85952 1.04940 1.19888 0.91610 0.81248 0.73834 1.90796 1.39143 1.61687 1.44071 1.46876 1.08949 1.09226 1.68400 1.21274 0.86044 0.94813 0.96759 1.21880 0.96475 1.01075 0.99011 1.20786 0.85092 0.80713 0.83344 1.90678 1.64375 1.58863 1.32757 1.46145 1.31268 1.50257 1.08947 1.21258 0.86011 0.92264 0.98896 1.19144 0.95855 0.96098 0.90463 1.21498 1.13484 1.30600 0.92945 0.92309 1.25891 1.00522 0.97769 0.95094 1.70058 1.42349 1.46248 0.97969 0.85378 0.78705 0.78367 0.78487 1.18997 1.20159 1.20151 1.19889 0.82719 0.90140 0.73833 1.90796 1.79276 1.21553 1.44071 0.87967 0.90406 0.86964 0.87967 0.90410 0.86957 0.88629 0.88631 0.86645 0.86659 0.75220 0.93393 0.93389 0.97273 0.97265 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.07 71.24 0.72 0.28 16 2 C -0.12 -1.36 6.38 -18.18 -0.12 -1.48 16 3 C -0.12 -1.36 6.38 -18.18 -0.12 -1.48 16 4 C -0.10 -0.44 10.07 71.24 0.72 0.28 16 5 C 0.54 11.01 8.03 86.86 0.70 11.70 16 6 O -0.48 -12.71 17.74 -3.39 -0.06 -12.77 16 7 N -0.59 -12.76 2.64 -762.72 -2.02 -14.77 16 8 C 0.13 3.28 5.11 86.38 0.44 3.72 16 9 C -0.14 -3.47 6.02 29.85 0.18 -3.29 16 10 C 0.51 17.19 7.83 87.65 0.69 17.87 16 11 O -0.59 -24.02 15.98 -3.03 -0.05 -24.06 16 12 N -0.72 -25.00 5.56 -463.07 -2.57 -27.57 16 13 C 0.14 6.07 5.61 86.38 0.48 6.56 16 14 C 0.02 1.11 5.09 29.85 0.15 1.26 16 15 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.34 5.46 84.66 0.46 0.80 16 18 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 19 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.54 11.01 8.03 86.86 0.70 11.70 16 24 O -0.48 -12.71 17.74 -3.40 -0.06 -12.77 16 25 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.11 -0.08 7.88 -2.39 -0.02 -0.10 16 28 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 -0.09 7.88 -2.39 -0.02 -0.11 16 31 H 0.10 2.54 7.97 -2.39 -0.02 2.53 16 32 H 0.10 2.54 7.97 -2.39 -0.02 2.52 16 33 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.41 12.23 8.47 -92.71 -0.79 11.45 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -75.24 354.62 3.06 -72.17 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.27 Total: 10.85 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.24 Total: 17.28 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -4.30 Total: -96.75 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.17 Total: -49.60 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -75.24 3.06 -72.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907322311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.211 kcal (2) G-P(sol) polarization free energy of solvation -75.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds