Wall clock time and date at job start Tue Mar 31 2020 03:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47153 * 2 1 4 4 C 1.46501 * 119.99736 * 269.99948 * 3 2 1 5 5 C 1.50708 * 109.47162 * 269.99779 * 4 3 2 6 6 H 1.07999 * 119.99560 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00051 * 179.97438 * 5 4 3 8 8 N 1.31506 * 119.99778 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99906 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47017 * 90.00176 * 9 7 5 11 11 H 1.48498 * 109.47168 * 210.00067 * 9 7 5 12 12 H 1.48504 * 109.47501 * 329.99829 * 9 7 5 13 13 C 1.34770 * 120.00416 * 89.99906 * 3 2 1 14 14 O 1.21289 * 120.00411 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00119 * 359.97438 * 13 3 2 16 16 O 1.45199 * 109.47668 * 179.97438 * 15 13 3 17 17 C 1.34890 * 117.00356 * 179.97438 * 16 15 13 18 18 O 1.21619 * 120.00118 * 0.02562 * 17 16 15 19 19 C 1.46489 * 120.00162 * 180.02562 * 17 16 15 20 20 C 1.37997 * 126.26553 * 179.69096 * 19 17 16 21 21 C 1.39797 * 106.97095 * 180.26346 * 20 19 17 22 22 C 1.35492 * 107.84203 * 0.02562 * 21 20 19 23 23 N 1.34956 * 108.98536 * 359.97438 * 22 21 20 24 24 C 1.46494 * 125.63679 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47425 * 300.00160 * 1 2 3 26 26 H 1.08997 * 109.47096 * 60.00662 * 1 2 3 27 27 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47180 * 239.99376 * 2 1 3 29 29 H 1.09001 * 109.46841 * 119.99782 * 2 1 3 30 30 H 1.09001 * 109.47099 * 29.99800 * 4 3 2 31 31 H 1.09004 * 109.47538 * 149.99821 * 4 3 2 32 32 H 0.96998 * 119.99907 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47124 * 60.00094 * 15 13 3 34 34 H 1.09002 * 109.47399 * 300.00428 * 15 13 3 35 35 H 1.07999 * 126.51087 * 0.22706 * 20 19 17 36 36 H 1.07997 * 126.08257 * 180.02562 * 21 20 19 37 37 H 1.07992 * 125.50807 * 180.02562 * 22 21 20 38 38 H 1.08995 * 109.47700 * 269.95911 * 24 23 22 39 39 H 1.09006 * 109.47068 * 29.95805 * 24 23 22 40 40 H 1.09008 * 109.47596 * 149.95590 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3895 -2.8781 8 7 5.3910 2.1824 -3.2579 9 14 3.0128 3.4349 -3.9293 10 1 3.1164 4.8552 -3.5084 11 1 3.4057 3.3116 -5.3561 12 1 1.6131 2.9689 -3.7594 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1603 1.1671 15 6 1.9913 1.3065 2.4722 16 8 2.3065 2.1958 3.5759 17 6 2.1337 1.7101 4.8224 18 8 1.7309 0.5737 4.9818 19 6 2.4312 2.5515 5.9841 20 6 2.2964 2.1907 7.3092 21 6 2.6834 3.2950 8.0742 22 6 3.0386 4.2865 7.2218 23 7 2.8907 3.8493 5.9536 24 6 3.1726 4.6266 4.7444 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1410 -1.1386 32 1 5.7169 2.5722 -4.0842 33 1 2.6211 0.4188 2.5303 34 1 0.9432 1.0127 2.5298 35 1 1.9559 1.2368 7.6840 36 1 2.6969 3.3483 9.1527 37 1 3.3848 5.2678 7.5105 38 1 2.2737 5.1619 4.4387 39 1 3.9691 5.3419 4.9497 40 1 3.4849 3.9547 3.9449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918801079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:58 Heat of formation + Delta-G solvation = -83.132053 kcal Electronic energy + Delta-G solvation = -23610.534406 eV Core-core repulsion = 20005.203085 eV Total energy + Delta-G solvation = -3605.331321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.50841 -41.37745 -40.43708 -37.67306 -37.02988 -34.90124 -33.85480 -32.11903 -31.25150 -30.29639 -28.64800 -27.44839 -24.90463 -24.41495 -23.73939 -21.60110 -21.02448 -20.18927 -19.15288 -19.06103 -18.25191 -17.93984 -17.79307 -17.16370 -16.51999 -16.32726 -16.05482 -15.62986 -15.07608 -14.80226 -14.56989 -14.48826 -14.33653 -14.13627 -13.79224 -13.70036 -13.43378 -13.31097 -13.21527 -13.18816 -12.92800 -12.59079 -12.44538 -12.17934 -12.03945 -11.98865 -11.83294 -11.75915 -10.85104 -10.81905 -9.78542 -9.55606 -9.35403 -8.35319 -6.41266 0.11746 1.13077 1.33394 1.36574 1.45170 1.53303 1.67691 1.83071 2.07322 2.29802 2.32094 2.98900 3.34975 3.54394 3.86440 3.91643 3.95487 4.11183 4.16499 4.33951 4.37464 4.41193 4.52165 4.56018 4.73769 4.81282 4.85047 4.92924 4.97049 5.01597 5.10378 5.25929 5.33695 5.42871 5.53498 5.70917 5.87758 6.19596 6.24253 6.46021 6.56820 6.60499 7.11776 7.26098 8.81610 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.003719 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.925940 B = 7526.544384 C = 8366.183595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.228 3.772 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.504 3.496 14 O -0.570 6.570 15 C 0.060 3.940 16 O -0.345 6.345 17 C 0.536 3.464 18 O -0.525 6.525 19 C -0.093 4.093 20 C -0.099 4.099 21 C -0.221 4.221 22 C 0.046 3.954 23 N -0.420 5.420 24 C 0.062 3.938 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.269 0.731 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.212 0.788 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 1.309 18.997 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.106 3.894 5 C -0.578 4.578 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.291 3.709 14 O -0.449 6.449 15 C -0.016 4.016 16 O -0.262 6.262 17 C 0.383 3.617 18 O -0.416 6.416 19 C -0.202 4.202 20 C -0.126 4.126 21 C -0.244 4.244 22 C -0.091 4.091 23 N -0.094 5.094 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.173 0.827 36 H 0.194 0.806 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.167 1.745 18.458 21.145 hybrid contribution 0.257 0.147 -1.045 1.086 sum -9.910 1.892 17.413 20.125 Atomic orbital electron populations 1.22177 0.93653 1.03949 1.02256 1.21892 0.95914 0.80820 1.04378 1.47951 1.63815 1.15298 1.05305 1.19378 0.95034 0.93200 0.81805 1.21548 0.97019 1.32375 1.06861 0.95294 1.25846 0.96711 0.97141 0.98899 1.70045 1.17480 1.46469 1.24456 0.85718 0.80492 0.79037 0.77734 1.20036 1.20113 1.15933 1.20393 0.78138 0.86703 0.85623 1.90653 1.46760 1.19815 1.87673 1.22839 1.04769 0.92056 0.81962 1.86668 1.79450 1.45211 1.14830 1.20205 0.74138 0.85308 0.82019 1.90849 1.44956 1.19240 1.86544 1.19455 1.20474 0.87681 0.92567 1.21629 1.00991 1.00837 0.89156 1.21271 1.09433 0.92718 1.00945 1.22785 1.02954 1.02098 0.81292 1.44233 1.46795 1.10016 1.08322 1.22409 1.03892 0.96830 0.84668 0.92366 0.92740 0.88557 0.89931 0.89038 0.92703 0.95895 0.92212 0.87105 0.85805 0.82733 0.80638 0.77149 0.89824 0.86454 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.09 2.64 5.93 86.38 0.51 3.15 16 3 N -0.59 -23.50 2.46 -826.14 -2.03 -25.53 16 4 C 0.23 10.79 4.23 85.64 0.36 11.15 16 5 C -0.54 -31.30 9.94 25.60 0.25 -31.04 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.71 5.47 84.66 0.46 1.18 16 8 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 9 Si 0.95 43.52 27.47 68.60 1.88 45.41 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 13 C 0.50 20.49 7.75 87.66 0.68 21.17 16 14 O -0.57 -28.10 16.08 15.74 0.25 -27.85 16 15 C 0.06 1.90 4.51 71.23 0.32 2.22 16 16 O -0.35 -11.54 7.19 -51.65 -0.37 -11.92 16 17 C 0.54 16.83 7.92 69.97 0.55 17.39 16 18 O -0.53 -17.63 16.68 19.45 0.32 -17.31 16 19 C -0.09 -2.51 6.89 40.31 0.28 -2.23 16 20 C -0.10 -2.22 10.66 22.59 0.24 -1.98 16 21 C -0.22 -3.59 10.81 22.01 0.24 -3.36 16 22 C 0.05 0.72 11.35 83.58 0.95 1.67 16 23 N -0.42 -9.37 3.15 -534.85 -1.68 -11.05 16 24 C 0.06 1.34 10.55 127.77 1.35 2.69 16 25 H 0.06 1.20 7.22 -2.39 -0.02 1.19 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 29 H 0.09 2.20 6.44 -2.39 -0.02 2.19 16 30 H 0.06 2.37 7.13 -2.39 -0.02 2.35 16 31 H 0.02 1.16 6.85 -2.38 -0.02 1.14 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.11 3.20 7.40 -2.39 -0.02 3.18 16 34 H 0.12 3.19 7.18 -2.39 -0.02 3.18 16 35 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.21 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.08 2.21 6.17 -2.38 -0.01 2.20 16 Total: -1.00 -79.93 343.53 6.60 -73.33 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.99 Total: 14.63 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 6.94 Total: 19.20 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -3.41 Total: -95.49 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: 0.21 Total: -57.07 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.41 kcal Total: -79.93 6.60 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918801079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.803 kcal (2) G-P(sol) polarization free energy of solvation -79.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds