Wall clock time and date at job start Tue Mar 31 2020 03:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30454 * 125.98826 * 2 1 4 4 N 1.39935 * 108.89599 * 179.73688 * 3 2 1 5 5 H 0.97000 * 125.75050 * 180.02562 * 4 3 2 6 6 C 1.34254 * 108.49124 * 359.97438 * 4 3 2 7 7 C 1.38048 * 107.42037 * 0.02562 * 6 4 3 8 8 C 1.47425 * 126.41140 * 180.02562 * 7 6 4 9 9 O 1.21613 * 119.99466 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00699 * 359.95118 * 8 7 6 11 11 C 1.46498 * 120.00305 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46975 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.64005 * 56.69476 * 12 11 10 14 14 C 1.54323 * 110.72505 * 293.54734 * 12 11 10 15 15 N 1.47023 * 107.27332 * 219.44524 * 14 12 11 16 16 C 1.36940 * 125.64877 * 178.90372 * 15 14 12 17 17 H 1.07997 * 119.99475 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99768 * 179.97438 * 16 15 14 19 19 N 1.31612 * 120.00254 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99437 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47101 * 90.00517 * 20 18 16 22 22 H 1.48500 * 109.46900 * 210.00110 * 20 18 16 23 23 H 1.48495 * 109.47568 * 330.00209 * 20 18 16 24 24 C 1.47422 * 108.70213 * 358.94184 * 15 14 12 25 25 C 1.54905 * 104.83652 * 24.12592 * 24 15 14 26 26 H 1.08999 * 111.00451 * 81.06343 * 25 24 15 27 27 O 1.42893 * 111.01069 * 204.91788 * 25 24 15 28 28 H 1.08995 * 109.46918 * 90.02408 * 1 2 3 29 29 H 1.08998 * 109.46668 * 210.02685 * 1 2 3 30 30 H 1.09000 * 109.46714 * 330.02353 * 1 2 3 31 31 H 1.08007 * 126.28855 * 179.97438 * 6 4 3 32 32 H 0.97008 * 119.99572 * 0.02562 * 10 8 7 33 33 H 1.08993 * 109.47247 * 300.00438 * 11 10 8 34 34 H 1.09003 * 109.46831 * 60.00063 * 11 10 8 35 35 H 1.08999 * 109.88029 * 338.86475 * 14 12 11 36 36 H 1.09000 * 109.88043 * 100.02617 * 14 12 11 37 37 H 0.96993 * 119.99980 * 179.97438 * 19 18 16 38 38 H 1.08992 * 110.36735 * 142.96780 * 24 15 14 39 39 H 1.09007 * 110.36564 * 265.18024 * 24 15 14 40 40 H 0.96700 * 114.00101 * 292.20427 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6112 0.6443 0.0061 5 1 4.3842 1.2302 0.0077 6 6 3.6439 -0.6979 0.0104 7 6 2.3373 -1.1432 0.0065 8 6 1.8917 -2.5485 0.0096 9 8 0.7039 -2.8097 0.0061 10 7 2.8005 -3.5437 0.0159 11 6 2.3576 -4.9401 0.0185 12 6 3.5784 -5.8623 0.0251 13 1 4.2198 -5.6445 0.8791 14 6 4.3661 -5.7351 -1.2959 15 7 4.8128 -7.0851 -1.6695 16 6 5.5268 -7.4071 -2.7928 17 1 5.8088 -6.6349 -3.4932 18 6 5.8890 -8.7259 -3.0305 19 7 5.5458 -9.6668 -2.1767 20 14 6.8625 -9.1651 -4.5631 21 1 8.3154 -9.0798 -4.2681 22 1 6.5235 -10.5479 -4.9853 23 1 6.5224 -8.2171 -5.6543 24 6 4.3638 -8.0347 -0.6351 25 6 3.1417 -7.3512 0.0273 26 1 2.2418 -7.4952 -0.5707 27 8 2.9494 -7.8266 1.3610 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 4.5298 -1.3156 0.0151 32 1 3.7479 -3.3353 0.0188 33 1 1.7546 -5.1285 0.9067 34 1 1.7612 -5.1337 -0.8732 35 1 3.7205 -5.3294 -2.0748 36 1 5.2294 -5.0856 -1.1516 37 1 5.7986 -10.5883 -2.3430 38 1 4.0691 -8.9801 -1.0904 39 1 5.1533 -8.1976 0.0986 40 1 2.6759 -8.7527 1.4129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958300983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:37 Heat of formation + Delta-G solvation = -18.126999 kcal Electronic energy + Delta-G solvation = -23396.504188 eV Core-core repulsion = 19826.284449 eV Total energy + Delta-G solvation = -3570.219739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.39023 -40.46477 -39.49994 -36.62282 -36.04984 -34.09434 -33.86291 -32.06488 -30.75564 -29.24529 -28.85631 -27.21112 -25.34595 -23.78879 -22.30769 -21.37556 -21.35292 -20.61313 -19.43856 -18.88009 -18.25304 -17.43304 -17.02169 -16.54743 -16.48579 -15.91629 -15.63476 -15.33216 -15.20210 -14.71047 -14.70241 -14.21682 -14.02322 -13.84858 -13.71623 -13.62812 -13.20315 -13.07524 -12.95088 -12.74658 -12.33311 -12.29114 -11.98570 -11.87662 -11.82409 -11.35618 -10.94681 -10.73841 -10.69608 -10.51595 -10.14836 -9.72293 -8.89862 -7.77923 -5.22801 0.55335 1.09699 1.49039 1.50046 1.58806 1.81378 2.27858 2.47400 2.49606 3.23929 3.33282 3.50441 3.66464 3.78273 3.79653 3.96304 4.15482 4.22580 4.31719 4.47061 4.48877 4.52714 4.66604 4.78306 4.82430 4.91642 4.96664 5.00389 5.02846 5.32144 5.44716 5.46249 5.50089 5.52047 5.76678 6.27026 6.27043 6.48393 6.70011 6.90949 7.09566 7.34406 7.76420 8.38935 9.23912 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.003373 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.714808 B = 8298.687569 C = 9173.537439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.119 3.881 3 N -0.326 5.326 4 N -0.447 5.447 5 H 0.461 0.539 6 C 0.137 3.863 7 C -0.320 4.320 8 C 0.592 3.408 9 O -0.583 6.583 10 N -0.713 5.713 11 C 0.150 3.850 12 C -0.087 4.087 13 H 0.095 0.905 14 C 0.140 3.860 15 N -0.624 5.624 16 C -0.238 4.238 17 H 0.086 0.914 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.980 3.020 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.133 3.867 25 C 0.096 3.904 26 H 0.066 0.934 27 O -0.569 6.569 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.247 0.753 38 H 0.077 0.923 39 H -0.007 1.007 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 17.139 6.192 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 N -0.150 5.150 4 N -0.152 5.152 5 H 0.310 0.690 6 C -0.018 4.018 7 C -0.335 4.335 8 C 0.381 3.619 9 O -0.464 6.464 10 N -0.364 5.364 11 C 0.026 3.974 12 C -0.106 4.106 13 H 0.113 0.887 14 C 0.015 3.985 15 N -0.351 5.351 16 C -0.367 4.367 17 H 0.103 0.897 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.194 1.194 24 C 0.007 3.993 25 C 0.035 3.965 26 H 0.083 0.917 27 O -0.376 6.376 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.247 0.753 32 H 0.248 0.752 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.011 0.989 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.932 18.688 6.229 20.087 hybrid contribution 1.356 -1.795 -0.900 2.423 sum -2.576 16.893 5.328 17.900 Atomic orbital electron populations 1.20325 0.85516 1.03933 1.03774 1.22719 0.98042 0.89132 0.94989 1.77113 0.87648 1.22649 1.27606 1.46139 1.07499 1.05949 1.55647 0.69042 1.23762 0.99136 0.85787 0.93113 1.20280 0.93784 0.93431 1.26051 1.17499 0.85163 0.84325 0.74950 1.90718 1.17956 1.84935 1.52790 1.45668 1.10194 1.05272 1.75313 1.21090 0.95176 0.79429 1.01753 1.22237 0.96526 0.93292 0.98540 0.88698 1.21535 0.96019 0.87386 0.93578 1.44602 1.64036 1.03343 1.23150 1.19476 1.25962 0.93150 0.98065 0.89654 1.25620 1.02681 0.95859 1.01755 1.70005 1.51901 1.00280 1.37687 0.85056 0.78046 0.76964 0.79126 1.21410 1.22200 1.19360 1.22306 0.92334 0.95221 0.89406 1.22998 0.96940 0.93555 0.83023 0.91655 1.86341 1.91580 1.33334 1.26324 0.89918 0.90025 0.89732 0.75333 0.75217 0.91351 0.92409 0.94971 0.94045 0.94312 0.90535 0.98927 0.75716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.92 71.24 0.71 -0.94 16 2 C 0.12 2.78 7.26 43.51 0.32 3.09 16 3 N -0.33 -6.96 12.63 -46.67 -0.59 -7.55 16 4 N -0.45 -5.86 7.29 -56.31 -0.41 -6.27 16 5 H 0.46 2.43 8.96 -213.43 -1.91 0.52 16 6 C 0.14 1.78 11.52 84.28 0.97 2.75 16 7 C -0.32 -7.04 6.13 -20.15 -0.12 -7.17 16 8 C 0.59 15.92 7.81 86.66 0.68 16.60 16 9 O -0.58 -19.95 14.92 -4.07 -0.06 -20.01 16 10 N -0.71 -16.61 5.39 -466.38 -2.51 -19.12 16 11 C 0.15 4.21 4.99 86.38 0.43 4.64 16 12 C -0.09 -2.73 2.75 -9.60 -0.03 -2.75 16 13 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 14 C 0.14 5.14 6.52 86.73 0.57 5.71 16 15 N -0.62 -30.45 3.39 -692.01 -2.35 -32.80 16 16 C -0.24 -12.74 10.27 84.03 0.86 -11.88 16 17 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.07 -3.65 5.49 84.86 0.47 -3.19 16 19 N -0.95 -54.78 10.09 21.65 0.22 -54.56 16 20 Si 0.98 44.18 29.55 68.60 2.03 46.21 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 C 0.13 6.29 5.62 86.85 0.49 6.78 16 25 C 0.10 3.46 3.88 31.99 0.12 3.58 16 26 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 27 O -0.57 -18.41 13.47 -148.98 -2.01 -20.42 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.00 6.55 -2.39 -0.02 1.98 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.23 0.83 7.46 -2.91 -0.02 0.81 16 32 H 0.41 7.01 7.25 -92.70 -0.67 6.34 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 35 H 0.03 1.19 7.76 -2.39 -0.02 1.17 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.08 4.11 5.87 -2.39 -0.01 4.10 16 39 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 40 H 0.39 9.86 9.12 -74.06 -0.68 9.19 16 Total: -1.00 -75.95 334.30 -2.38 -78.33 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -2.16 Total: 18.95 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 5.46 Total: 17.23 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.64 Total: -120.30 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -2.07 Total: -40.43 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -75.95 -2.38 -78.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958300983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds