Wall clock time and date at job start Tue Mar 31 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33322 * 126.11167 * 2 1 4 4 C 1.30854 * 109.68627 * 180.02562 * 3 2 1 5 5 N 1.34489 * 109.16470 * 359.76137 * 4 3 2 6 6 H 0.96999 * 126.47418 * 180.25220 * 5 4 3 7 7 C 1.36659 * 126.10505 * 180.02562 * 2 1 3 8 8 C 1.46764 * 126.84624 * 359.96199 * 7 2 1 9 9 O 1.21680 * 119.99943 * 359.97438 * 8 7 2 10 10 N 1.34775 * 120.00481 * 180.02562 * 8 7 2 11 11 C 1.46495 * 120.00557 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47438 * 179.97438 * 11 10 8 13 13 H 1.08995 * 110.77871 * 51.76293 * 12 11 10 14 14 C 1.54327 * 110.71795 * 288.52442 * 12 11 10 15 15 N 1.47029 * 107.26790 * 219.44300 * 14 12 11 16 16 C 1.36939 * 125.64538 * 178.98666 * 15 14 12 17 17 H 1.08001 * 120.00082 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99535 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00389 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47077 * 90.00336 * 20 18 16 22 22 H 1.48500 * 109.47260 * 209.99863 * 20 18 16 23 23 H 1.48502 * 109.47524 * 330.00537 * 20 18 16 24 24 C 1.47424 * 108.70208 * 358.94247 * 15 14 12 25 25 C 1.54903 * 104.83433 * 24.12654 * 24 15 14 26 26 H 1.09003 * 111.03646 * 204.90257 * 25 24 15 27 27 O 1.42905 * 111.00435 * 81.06596 * 25 24 15 28 28 H 1.09008 * 109.47038 * 270.00041 * 1 2 3 29 29 H 1.09006 * 109.47219 * 29.99122 * 1 2 3 30 30 H 1.08993 * 109.47582 * 149.99999 * 1 2 3 31 31 H 1.08001 * 125.41323 * 179.97438 * 4 3 2 32 32 H 0.97006 * 119.99555 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46807 * 59.99426 * 11 10 8 34 34 H 1.09003 * 109.47124 * 299.99661 * 11 10 8 35 35 H 1.09001 * 109.88594 * 338.85611 * 14 12 11 36 36 H 1.08993 * 109.88237 * 100.02754 * 14 12 11 37 37 H 0.96998 * 120.00010 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36356 * 265.28931 * 24 15 14 39 39 H 1.09000 * 110.36592 * 142.97062 * 24 15 14 40 40 H 0.96705 * 113.99788 * 67.80291 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0006 5 7 3.6121 -0.6363 0.0044 6 1 4.4188 -1.1750 0.0086 7 6 2.3122 -1.1041 -0.0005 8 6 1.8820 -2.5073 -0.0003 9 8 0.6961 -2.7800 0.0007 10 7 2.8002 -3.4938 -0.0004 11 6 2.3707 -4.8944 0.0004 12 6 3.6003 -5.8050 -0.0005 13 1 4.2871 -5.5280 0.7993 14 6 4.3108 -5.7617 -1.3698 15 7 4.7509 -7.1306 -1.6766 16 6 5.4055 -7.5224 -2.8138 17 1 5.6402 -6.7971 -3.5789 18 6 5.7684 -8.8515 -2.9826 19 7 5.4829 -9.7353 -2.0499 20 14 6.6608 -9.3862 -4.5341 21 1 8.1267 -9.2708 -4.3267 22 1 6.3142 -10.7967 -4.8434 23 1 6.2510 -8.5162 -5.6657 24 6 4.3717 -8.0112 -0.5567 25 6 3.1812 -7.2934 0.1267 26 1 3.0955 -7.5872 1.1729 27 8 1.9613 -7.5438 -0.5743 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.3970 1.3744 -0.0011 32 1 3.7456 -3.2764 -0.0009 33 1 1.7725 -5.0914 -0.8893 34 1 1.7734 -5.0908 0.8907 35 1 3.6178 -5.4146 -2.1363 36 1 5.1735 -5.0976 -1.3189 37 1 5.7362 -10.6641 -2.1681 38 1 5.2024 -8.1165 0.1411 39 1 4.0625 -8.9876 -0.9299 40 1 1.6595 -8.4611 -0.5233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958764097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:21 Heat of formation + Delta-G solvation = -29.040615 kcal Electronic energy + Delta-G solvation = -23581.617141 eV Core-core repulsion = 20010.924152 eV Total energy + Delta-G solvation = -3570.692989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.21020 -40.65489 -39.66195 -36.35755 -36.22593 -34.40641 -33.82055 -32.30911 -31.29162 -29.52255 -28.29534 -27.15704 -25.38598 -23.79969 -22.43307 -21.90584 -21.41848 -20.63392 -19.73153 -19.11448 -18.11731 -17.17249 -16.84794 -16.83575 -16.80376 -16.05715 -15.65935 -15.55807 -15.38546 -15.06454 -14.56107 -14.41818 -13.96467 -13.92939 -13.73666 -13.67480 -13.18935 -13.11568 -13.03182 -12.66958 -12.34350 -12.06621 -11.88830 -11.84851 -11.69781 -11.48328 -11.02386 -10.92864 -10.81669 -10.66580 -10.26559 -9.51098 -8.86977 -7.80145 -5.22447 0.24791 1.45468 1.46784 1.55305 1.84706 1.87691 2.13597 2.23514 2.47636 3.26647 3.34283 3.54784 3.58787 3.79151 3.88506 3.93734 3.97926 4.14258 4.29722 4.41672 4.58337 4.63367 4.70481 4.80800 4.82158 4.89879 4.97512 4.98370 5.05691 5.25795 5.34375 5.38743 5.49755 5.54903 5.76720 6.27734 6.30976 6.42426 6.91482 6.95691 7.06051 7.10123 7.76895 8.39177 9.21777 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.003338 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.779234 B = 8386.319823 C = 9085.754278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.078 3.922 3 N -0.536 5.536 4 C 0.242 3.758 5 N -0.541 5.541 6 H 0.440 0.560 7 C -0.110 4.110 8 C 0.592 3.408 9 O -0.561 6.561 10 N -0.714 5.714 11 C 0.158 3.842 12 C -0.090 4.090 13 H 0.117 0.883 14 C 0.142 3.858 15 N -0.621 5.621 16 C -0.238 4.238 17 H 0.076 0.924 18 C -0.064 4.064 19 N -0.946 5.946 20 Si 0.977 3.023 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.274 1.274 24 C 0.126 3.874 25 C 0.093 3.907 26 H 0.090 0.910 27 O -0.570 6.570 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.264 0.736 32 H 0.408 0.592 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.012 0.988 36 H 0.034 0.966 37 H 0.247 0.753 38 H 0.003 0.997 39 H 0.079 0.921 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 16.474 8.302 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 N -0.257 5.257 4 C -0.042 4.042 5 N -0.148 5.148 6 H 0.282 0.718 7 C -0.226 4.226 8 C 0.379 3.621 9 O -0.440 6.440 10 N -0.365 5.365 11 C 0.034 3.966 12 C -0.109 4.109 13 H 0.135 0.865 14 C 0.017 3.983 15 N -0.347 5.347 16 C -0.367 4.367 17 H 0.094 0.906 18 C -0.257 4.257 19 N -0.596 5.596 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.199 1.199 24 C 0.001 3.999 25 C 0.032 3.968 26 H 0.108 0.892 27 O -0.377 6.377 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.280 0.720 32 H 0.243 0.757 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.097 0.903 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.043 17.487 8.063 19.495 hybrid contribution 1.720 -2.246 -0.822 2.946 sum -1.323 15.241 7.241 16.925 Atomic orbital electron populations 1.20251 0.86656 1.03274 1.03173 1.21307 0.97492 0.87361 0.99491 1.70149 1.02027 1.30617 1.22899 1.26110 0.97598 0.82328 0.98168 1.43281 1.07396 1.09139 1.54940 0.71830 1.20675 0.85983 0.93979 1.21930 1.17042 0.85548 0.83363 0.76113 1.90805 1.17596 1.83567 1.52022 1.45815 1.09767 1.06091 1.74849 1.20942 0.95564 0.78056 1.02051 1.22458 0.96414 0.93808 0.98259 0.86533 1.21455 0.95517 0.87048 0.94276 1.44643 1.67220 1.04232 1.18566 1.19406 1.28373 0.93368 0.95566 0.90579 1.25544 1.02731 0.96037 1.01355 1.69983 1.52942 1.02004 1.34693 0.85096 0.78110 0.76999 0.79216 1.21179 1.21983 1.19919 1.22453 0.93012 0.96333 0.88114 1.23114 0.84541 0.94271 0.94854 0.89215 1.86382 1.39778 1.34108 1.77463 0.90351 0.90241 0.90829 0.72021 0.75656 0.92970 0.90795 0.97046 0.94833 0.94307 0.97959 0.90336 0.76260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 9.88 71.23 0.70 -1.07 16 2 C 0.08 1.94 7.15 41.96 0.30 2.24 16 3 N -0.54 -11.77 11.20 -187.60 -2.10 -13.87 16 4 C 0.24 3.14 13.01 180.33 2.35 5.49 16 5 N -0.54 -7.32 6.07 -188.05 -1.14 -8.46 16 6 H 0.44 2.85 8.32 -92.71 -0.77 2.08 16 7 C -0.11 -2.51 7.08 40.01 0.28 -2.22 16 8 C 0.59 16.18 7.79 86.47 0.67 16.85 16 9 O -0.56 -19.41 14.82 -4.29 -0.06 -19.47 16 10 N -0.71 -16.74 5.47 -467.00 -2.55 -19.29 16 11 C 0.16 4.49 4.50 86.38 0.39 4.88 16 12 C -0.09 -2.70 2.89 -9.60 -0.03 -2.73 16 13 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.14 5.48 6.75 86.73 0.59 6.06 16 15 N -0.62 -30.72 3.39 -691.98 -2.35 -33.07 16 16 C -0.24 -13.10 10.27 84.03 0.86 -12.24 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 19 N -0.95 -54.39 10.09 21.65 0.22 -54.17 16 20 Si 0.98 44.89 29.55 68.60 2.03 46.91 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.13 5.77 5.62 86.85 0.49 6.26 16 25 C 0.09 3.14 4.17 31.98 0.13 3.28 16 26 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 27 O -0.57 -20.06 12.33 -148.98 -1.84 -21.90 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.96 6.48 -2.39 -0.02 1.94 16 31 H 0.26 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.41 6.97 7.71 -92.70 -0.72 6.26 16 33 H 0.05 1.85 7.52 -2.38 -0.02 1.83 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.01 0.48 7.68 -2.39 -0.02 0.46 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.08 4.14 5.87 -2.39 -0.01 4.12 16 40 H 0.39 11.19 9.12 -74.05 -0.68 10.51 16 Total: -1.00 -77.65 332.73 -1.66 -79.31 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -1.06 Total: 20.29 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 7.20 Total: 23.70 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -7.93 Total: -128.85 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.90 Total: -41.37 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.65 -1.66 -79.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958764097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.267 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds