Wall clock time and date at job start Tue Mar 31 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00004 * 2 1 4 4 C 1.50701 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.35126 * 125.61957 * 89.97474 * 4 3 2 6 6 C 1.40362 * 107.11593 * 180.02562 * 5 4 3 7 7 C 1.36545 * 106.70917 * 0.02562 * 6 5 4 8 8 C 1.46654 * 125.98736 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00246 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00125 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64632 * 359.69445 * 10 8 7 12 12 C 1.55122 * 104.72311 * 155.81455 * 11 10 8 13 13 C 1.55167 * 101.48451 * 37.29960 * 12 11 10 14 14 H 1.08993 * 110.72040 * 82.69066 * 13 12 11 15 15 N 1.46500 * 110.72091 * 205.96849 * 13 12 11 16 16 C 1.36931 * 120.00348 * 199.97443 * 15 13 12 17 17 H 1.07999 * 119.99911 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00344 * 180.02562 * 16 15 13 19 19 N 1.31625 * 119.99665 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47396 * 59.99499 * 20 18 16 22 22 H 1.48497 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47218 * 299.99682 * 20 18 16 24 24 C 1.47017 * 125.64900 * 180.02562 * 10 8 7 25 25 O 1.33931 * 125.61413 * 269.97861 * 4 3 2 26 26 H 1.09006 * 109.46865 * 300.00000 * 1 2 3 27 27 H 1.09004 * 109.47454 * 59.99516 * 1 2 3 28 28 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47488 * 60.00464 * 3 2 1 30 30 H 1.09005 * 109.47386 * 300.00032 * 3 2 1 31 31 H 1.07996 * 126.44263 * 0.02562 * 5 4 3 32 32 H 1.08003 * 126.64463 * 180.26121 * 6 5 4 33 33 H 1.08999 * 110.36767 * 274.75015 * 11 10 8 34 34 H 1.09005 * 110.36514 * 37.06522 * 11 10 8 35 35 H 1.08991 * 111.19482 * 279.19280 * 12 11 10 36 36 H 1.08998 * 110.90665 * 155.27432 * 12 11 10 37 37 H 0.97003 * 119.99843 * 19.97056 * 15 13 12 38 38 H 0.97002 * 119.99547 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.88262 * 300.43889 * 24 10 8 40 40 H 1.08999 * 109.88488 * 61.45347 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2965 1.1241 -1.0994 6 6 5.6236 1.0185 -0.6545 7 6 5.5815 1.0213 0.7103 8 6 6.7372 0.9286 1.6083 9 8 7.8601 0.8396 1.1477 10 7 6.5559 0.9431 2.9438 11 6 5.2576 1.0535 3.6334 12 6 5.4959 0.4152 5.0269 13 6 6.9411 0.8858 5.3393 14 1 6.9378 1.8967 5.7469 15 7 7.6013 -0.0435 6.2594 16 6 8.6919 0.3650 6.9796 17 1 9.0656 1.3722 6.8691 18 6 9.3179 -0.5157 7.8510 19 7 8.8627 -1.7435 7.9853 20 14 10.8052 0.0418 8.8340 21 1 10.4269 1.1908 9.6955 22 1 11.2843 -1.0772 9.6845 23 1 11.8865 0.4555 7.9040 24 6 7.6206 0.8582 3.9540 25 8 4.2905 1.1251 1.0878 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.9645 1.1504 -2.1267 32 1 6.5072 0.9521 -1.2721 33 1 4.9708 2.1000 3.7368 34 1 4.4911 0.5013 3.0896 35 1 5.4413 -0.6722 4.9768 36 1 4.7905 0.8068 5.7599 37 1 7.2659 -0.9483 6.3585 38 1 9.2999 -2.3588 8.5946 39 1 8.1746 -0.0724 3.8315 40 1 8.2962 1.7077 3.8529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969266820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:22 Heat of formation + Delta-G solvation = -38.987899 kcal Electronic energy + Delta-G solvation = -23237.937585 eV Core-core repulsion = 19634.520498 eV Total energy + Delta-G solvation = -3603.417087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.86758 -39.56617 -38.24695 -37.32242 -34.20917 -33.30938 -31.79974 -31.24193 -29.61792 -28.27274 -27.15864 -25.87852 -24.16114 -22.81216 -22.04382 -21.34572 -20.21514 -19.64398 -17.78217 -17.22631 -17.05636 -16.59186 -16.30501 -16.17744 -15.75096 -15.31095 -14.58088 -14.24912 -14.00006 -13.56721 -13.42944 -13.22600 -13.12164 -13.09400 -12.73435 -12.49992 -12.24742 -11.92204 -11.87583 -11.58030 -11.14980 -10.83358 -10.74649 -10.33753 -10.24922 -10.19247 -10.12171 -10.04291 -9.75232 -9.00268 -8.85680 -8.35135 -7.09325 -5.83294 -3.14463 0.89296 2.05269 2.40527 3.13719 3.26088 3.42631 3.47284 3.48022 3.58541 4.30776 4.51893 4.55135 4.67034 4.78317 4.83326 4.91251 4.94278 4.96704 5.25035 5.26699 5.29674 5.45515 5.53452 5.59241 5.62263 5.72139 5.85519 5.95250 6.09725 6.17348 6.29237 6.35652 6.45709 6.58064 6.59319 6.79511 6.86802 7.63434 7.65383 8.17438 8.34164 9.45994 9.98952 10.33885 11.38648 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.026127 B = 0.003081 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.415551 B = 9085.282954 C = 9846.403443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.141 3.859 4 C -0.001 4.001 5 C -0.191 4.191 6 C -0.132 4.132 7 C -0.050 4.050 8 C 0.606 3.394 9 O -0.524 6.524 10 N -0.600 5.600 11 C 0.100 3.900 12 C -0.139 4.139 13 C 0.172 3.828 14 H 0.067 0.933 15 N -0.712 5.712 16 C -0.250 4.250 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.082 3.918 25 O -0.150 6.150 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.387 0.613 38 H 0.258 0.742 39 H 0.077 0.923 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.331 7.304 -17.057 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.065 3.935 4 C -0.053 4.053 5 C -0.210 4.210 6 C -0.152 4.152 7 C -0.102 4.102 8 C 0.393 3.607 9 O -0.403 6.403 10 N -0.333 5.333 11 C -0.023 4.023 12 C -0.178 4.178 13 C 0.060 3.940 14 H 0.085 0.915 15 N -0.352 5.352 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.043 4.043 25 O -0.046 6.046 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.222 0.778 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.543 7.154 -16.896 25.385 hybrid contribution 0.568 0.135 0.298 0.656 sum -16.975 7.289 -16.598 24.834 Atomic orbital electron populations 1.22812 0.79995 1.03417 1.00300 1.88007 1.20310 1.26539 1.95506 1.20706 0.84187 0.85990 1.02598 1.22219 0.92792 1.05596 0.84708 1.21586 0.92407 1.07382 0.99630 1.21936 0.98550 1.01790 0.92939 1.22278 0.81973 1.11324 0.94662 1.16249 0.85854 0.78138 0.80458 1.90884 1.22243 1.51736 1.75405 1.48486 1.10378 1.69995 1.04405 1.22498 0.85290 1.00893 0.93583 1.23104 0.98682 1.01496 0.94521 1.21217 0.89508 0.95228 0.88058 0.91490 1.42368 1.34046 1.12361 1.46438 1.19213 1.04649 0.97106 1.17135 0.90939 1.24780 0.99662 0.95870 1.00178 1.69656 1.42582 1.05007 1.40476 0.86237 0.82650 0.77316 0.79786 1.21136 1.21633 1.21078 1.23368 0.89988 1.02448 0.88496 1.84145 1.16367 1.69839 1.34233 0.93560 0.93708 0.89090 0.91015 0.89693 0.82598 0.82036 0.91249 0.90233 0.90359 0.89847 0.77796 0.93269 0.90477 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.60 10.69 -35.23 -0.38 -3.97 16 3 C 0.14 1.08 6.46 36.01 0.23 1.32 16 4 C 0.00 -0.01 6.94 -35.41 -0.25 -0.26 16 5 C -0.19 -2.00 10.77 -39.89 -0.43 -2.43 16 6 C -0.13 -1.69 10.62 -39.39 -0.42 -2.11 16 7 C -0.05 -0.74 6.93 -36.80 -0.25 -1.00 16 8 C 0.61 10.81 7.82 -12.86 -0.10 10.71 16 9 O -0.52 -10.88 17.19 5.19 0.09 -10.79 16 10 N -0.60 -10.33 3.32 -171.93 -0.57 -10.91 16 11 C 0.10 1.42 6.19 -2.41 -0.01 1.40 16 12 C -0.14 -2.16 6.71 -24.46 -0.16 -2.33 16 13 C 0.17 3.32 3.59 -66.09 -0.24 3.08 16 14 H 0.07 1.27 8.12 -51.93 -0.42 0.84 16 15 N -0.71 -17.39 5.18 -51.65 -0.27 -17.66 16 16 C -0.25 -6.80 9.98 -15.06 -0.15 -6.95 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 20 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.08 1.59 6.62 -3.06 -0.02 1.57 16 25 O -0.15 -1.99 7.85 5.00 0.04 -1.96 16 26 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.07 6.20 -51.93 -0.32 0.75 16 35 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.39 10.05 7.71 -40.82 -0.31 9.74 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.70 8.03 -51.93 -0.42 1.29 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -33.12 342.76 -6.67 -39.79 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.66 Total: 6.20 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.79 Total: 3.96 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.11 Total: -55.57 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.25 Total: -16.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.12 -6.67 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969266820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.803 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds