Wall clock time and date at job start Tue Mar 31 2020 03:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99760 * 2 1 4 4 H 1.48498 * 109.47279 * 274.81238 * 3 2 1 5 5 H 1.48500 * 109.47367 * 34.81593 * 3 2 1 6 6 H 1.48507 * 109.46487 * 154.81289 * 3 2 1 7 7 C 1.38803 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99972 * 170.81707 * 7 2 1 9 9 N 1.36938 * 120.00105 * 350.81182 * 7 2 1 10 10 C 1.48149 * 127.83394 * 164.38735 * 9 7 2 11 11 C 1.54394 * 104.61331 * 140.41819 * 10 9 7 12 12 H 1.09004 * 117.61397 * 242.76643 * 11 10 9 13 13 C 1.52997 * 118.12329 * 87.18907 * 11 10 9 14 14 H 1.08995 * 117.44261 * 16.06574 * 13 11 10 15 15 C 1.53005 * 117.43978 * 160.80708 * 13 11 10 16 16 N 1.46500 * 109.46836 * 184.99729 * 15 13 11 17 17 C 1.34777 * 120.00247 * 180.27490 * 16 15 13 18 18 O 1.21281 * 119.99546 * 359.72654 * 17 16 15 19 19 C 1.50699 * 120.00404 * 179.72955 * 17 16 15 20 20 H 1.08998 * 110.48939 * 38.75339 * 19 17 16 21 21 C 1.54100 * 110.54715 * 275.89549 * 19 17 16 22 22 N 1.47056 * 103.86351 * 241.40524 * 21 19 17 23 23 C 1.33939 * 109.17866 * 0.02562 * 22 21 19 24 24 O 1.21592 * 123.04326 * 180.02562 * 23 22 21 25 25 N 1.33950 * 113.91887 * 359.97438 * 23 22 21 26 26 C 1.52995 * 60.55644 * 268.45950 * 13 11 10 27 27 H 1.09009 * 119.53782 * 248.23548 * 26 13 11 28 28 C 1.48143 * 127.84050 * 344.39056 * 9 7 2 29 29 H 0.97008 * 120.00054 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.41019 * 21.63508 * 10 9 7 31 31 H 1.08994 * 110.40902 * 259.19859 * 10 9 7 32 32 H 1.08995 * 109.46788 * 65.00548 * 15 13 11 33 33 H 1.08996 * 109.47590 * 305.00125 * 15 13 11 34 34 H 0.97003 * 120.00260 * 0.02562 * 16 15 13 35 35 H 1.09000 * 110.55107 * 0.02562 * 21 19 17 36 36 H 1.09007 * 110.54550 * 122.81044 * 21 19 17 37 37 H 0.96997 * 125.40755 * 180.02562 * 22 21 19 38 38 H 0.97000 * 125.41355 * 179.97438 * 25 23 22 39 39 H 1.09000 * 110.40483 * 338.37130 * 28 9 7 40 40 H 1.09001 * 110.40502 * 100.68068 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3960 2.1053 -1.3951 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4129 0.5959 7 6 2.0102 -1.2021 -0.0005 8 1 3.0798 -1.2081 -0.1498 9 7 1.3386 -2.3805 0.1883 10 6 1.8191 -3.7545 -0.0875 11 6 1.2877 -4.5971 1.0921 12 1 2.0207 -5.0705 1.7454 13 6 -0.1170 -5.1925 0.9779 14 1 -0.5690 -5.2269 -0.0134 15 6 -0.4644 -6.3618 1.9015 16 7 -1.7970 -6.8698 1.5661 17 6 -2.3180 -7.9029 2.2573 18 8 -1.6817 -8.4152 3.1536 19 6 -3.6913 -8.4215 1.9163 20 1 -3.8442 -8.4156 0.8371 21 6 -4.7759 -7.5863 2.6239 22 7 -5.4612 -8.5588 3.4884 23 6 -4.8943 -9.7622 3.3326 24 8 -5.2669 -10.7531 3.9308 25 7 -3.8803 -9.7757 2.4574 26 6 0.0666 -3.8164 1.6209 27 1 -0.1184 -3.6929 2.6880 28 6 -0.0330 -2.5706 0.7146 29 1 -0.4850 0.8401 0.0004 30 1 2.9085 -3.7786 -0.1114 31 1 1.4093 -4.1185 -1.0296 32 1 -0.4553 -6.0218 2.9371 33 1 0.2703 -7.1567 1.7736 34 1 -2.3058 -6.4602 0.8489 35 1 -4.3213 -6.7963 3.2216 36 1 -5.4700 -7.1653 1.8964 37 1 -6.2056 -8.3601 4.0777 38 1 -3.3540 -10.5548 2.2190 39 1 -0.3409 -1.7013 1.2958 40 1 -0.7324 -2.7476 -0.1025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978677402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:11 Heat of formation + Delta-G solvation = -17.704239 kcal Electronic energy + Delta-G solvation = -22935.224155 eV Core-core repulsion = 19365.022748 eV Total energy + Delta-G solvation = -3570.201407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32838 -40.68947 -39.98086 -37.38369 -36.33102 -34.99896 -34.00476 -32.74521 -30.64222 -28.89527 -28.54160 -26.61701 -24.61396 -22.86067 -22.78796 -21.92522 -21.13582 -20.79699 -19.12327 -18.82115 -18.53754 -17.45574 -17.04718 -16.78565 -16.66891 -16.24553 -15.90071 -15.42755 -15.32310 -14.97643 -14.91920 -14.58731 -14.34427 -14.27793 -13.86098 -13.36228 -13.17698 -13.13738 -12.87548 -12.70270 -12.31761 -11.93883 -11.91315 -11.73014 -11.59594 -11.41412 -10.91852 -10.69120 -10.60474 -10.49587 -10.04970 -9.81989 -8.87391 -7.90815 -5.25774 1.39785 1.47477 1.48387 1.57937 1.69830 1.97230 2.19259 2.49123 2.77073 3.07279 3.27955 3.33966 3.58048 3.67137 3.75026 3.88446 4.02652 4.23056 4.33122 4.37836 4.47669 4.57654 4.67050 4.72554 4.73401 4.78417 4.96635 5.06097 5.23079 5.38294 5.46039 5.48077 5.58481 5.70722 5.91233 6.21037 6.21127 6.28668 6.54273 7.04143 7.17883 7.51981 7.70819 8.48592 9.22752 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.002529 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.651327 B =11069.550163 C =11559.633456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.622 5.622 10 C 0.147 3.853 11 C -0.164 4.164 12 H 0.123 0.877 13 C -0.104 4.104 14 H 0.117 0.883 15 C 0.162 3.838 16 N -0.702 5.702 17 C 0.501 3.499 18 O -0.577 6.577 19 C 0.108 3.892 20 H 0.165 0.835 21 C 0.102 3.898 22 N -0.730 5.730 23 C 0.694 3.306 24 O -0.640 6.640 25 N -0.714 5.714 26 C -0.175 4.175 27 H 0.109 0.891 28 C 0.188 3.812 29 H 0.250 0.750 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.422 0.578 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.440 0.560 38 H 0.435 0.565 39 H 0.050 0.950 40 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 -14.227 0.343 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.255 4.255 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.347 5.347 10 C 0.022 3.978 11 C -0.184 4.184 12 H 0.141 0.859 13 C -0.123 4.123 14 H 0.135 0.865 15 C 0.038 3.962 16 N -0.355 5.355 17 C 0.286 3.714 18 O -0.455 6.455 19 C -0.001 4.001 20 H 0.182 0.818 21 C -0.022 4.022 22 N -0.393 5.393 23 C 0.393 3.607 24 O -0.522 6.522 25 N -0.375 5.375 26 C -0.195 4.195 27 H 0.127 0.873 28 C 0.063 3.937 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.260 0.740 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.283 0.717 38 H 0.277 0.723 39 H 0.069 0.931 40 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -9.201 -14.769 1.222 17.443 hybrid contribution 0.388 1.157 -0.072 1.222 sum -8.813 -13.612 1.149 16.256 Atomic orbital electron populations 1.70071 1.06308 1.25653 1.57179 1.25671 0.96524 1.01046 1.02235 0.85113 0.77847 0.79258 0.77380 1.21227 1.21892 1.19551 1.19350 0.91285 0.83820 1.42486 0.90497 1.45535 1.14220 1.01104 1.73804 1.21308 0.97607 0.84366 0.94487 1.23740 0.90799 1.02302 1.01594 0.85922 1.22430 0.98087 0.91564 1.00215 0.86543 1.20678 0.84107 0.94044 0.97337 1.45838 1.18477 1.33605 1.37604 1.21266 0.88722 0.79944 0.81487 1.90764 1.63012 1.59408 1.32356 1.22174 0.91487 0.82941 1.03531 0.81772 1.22599 0.93566 0.91314 0.94763 1.45067 1.38206 1.07815 1.48237 1.16193 0.80655 0.84144 0.79755 1.90957 1.69716 1.37219 1.54343 1.44865 1.35640 1.11106 1.45885 1.24044 1.04185 0.91763 0.99510 0.87314 1.20821 0.85855 0.93762 0.93266 0.94116 0.92856 0.95281 0.92085 0.90717 0.74022 0.89224 0.84031 0.71711 0.72290 0.93150 0.97379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.58 10.87 21.65 0.24 -54.34 16 2 C -0.06 -3.36 5.40 84.86 0.46 -2.90 16 3 Si 0.98 44.29 29.56 68.60 2.03 46.32 16 4 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.12 10.35 84.03 0.87 -12.25 16 8 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 9 N -0.62 -30.65 3.38 -688.16 -2.33 -32.97 16 10 C 0.15 5.64 7.04 86.54 0.61 6.25 16 11 C -0.16 -4.95 6.85 -9.89 -0.07 -5.02 16 12 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 13 C -0.10 -2.42 5.39 -10.79 -0.06 -2.48 16 14 H 0.12 2.52 8.04 -2.39 -0.02 2.50 16 15 C 0.16 3.13 5.95 86.38 0.51 3.65 16 16 N -0.70 -9.40 5.56 -463.06 -2.57 -11.97 16 17 C 0.50 8.24 6.93 87.66 0.61 8.84 16 18 O -0.58 -15.81 16.60 -3.03 -0.05 -15.86 16 19 C 0.11 1.01 4.17 44.51 0.19 1.19 16 20 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16 21 C 0.10 0.70 7.70 86.65 0.67 1.37 16 22 N -0.73 -9.94 6.37 -477.34 -3.04 -12.99 16 23 C 0.69 15.40 8.92 179.57 1.60 17.00 16 24 O -0.64 -20.73 18.05 -4.01 -0.07 -20.80 16 25 N -0.71 -11.76 5.63 -460.35 -2.59 -14.35 16 26 C -0.18 -5.74 6.74 -9.89 -0.07 -5.81 16 27 H 0.11 3.43 8.12 -2.38 -0.02 3.41 16 28 C 0.19 8.52 5.70 86.53 0.49 9.01 16 29 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.36 7.94 -2.39 -0.02 1.34 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.42 2.97 8.40 -92.71 -0.78 2.19 16 35 H 0.09 0.68 7.72 -2.39 -0.02 0.66 16 36 H 0.14 -0.13 8.14 -2.38 -0.02 -0.15 16 37 H 0.44 4.63 8.96 -92.71 -0.83 3.80 16 38 H 0.43 6.83 8.96 -92.71 -0.83 6.00 16 39 H 0.05 2.65 6.52 -2.39 -0.02 2.63 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -82.01 336.30 -3.92 -85.93 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -1.34 Total: 12.18 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.81 Total: 18.86 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -10.30 Total: -126.62 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.12 Total: -36.66 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -82.01 -3.92 -85.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978677402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.227 kcal (2) G-P(sol) polarization free energy of solvation -82.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds