Wall clock time and date at job start Tue Mar 31 2020 04:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33222 * 126.01700 * 2 1 4 4 C 1.31544 * 109.75664 * 179.97438 * 3 2 1 5 5 O 1.35205 * 125.48689 * 179.97438 * 4 3 2 6 6 N 1.34940 * 109.01630 * 0.02562 * 4 3 2 7 7 H 0.97000 * 126.54208 * 180.02562 * 6 4 3 8 8 C 1.36719 * 126.01602 * 179.97438 * 2 1 3 9 9 C 1.46377 * 126.82762 * 359.97438 * 8 2 1 10 10 O 1.21736 * 119.99962 * 251.71000 * 9 8 2 11 11 N 1.34776 * 120.00052 * 71.70899 * 9 8 2 12 12 C 1.46932 * 120.62756 * 5.36840 * 11 9 8 13 13 C 1.53624 * 108.54313 * 126.36937 * 12 11 9 14 14 C 1.53040 * 109.24447 * 54.85251 * 13 12 11 15 15 N 1.46496 * 109.44876 * 178.49720 * 14 13 12 16 16 C 1.36933 * 120.00006 * 275.05986 * 15 14 13 17 17 H 1.07995 * 120.00151 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00029 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99904 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47206 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46965 * 120.00157 * 20 18 16 23 23 H 1.48501 * 109.47310 * 240.00377 * 20 18 16 24 24 C 1.53045 * 109.53761 * 298.51441 * 14 13 12 25 25 C 1.46919 * 120.63412 * 185.64339 * 11 9 8 26 26 H 1.09000 * 109.47119 * 90.02145 * 1 2 3 27 27 H 1.08999 * 109.47231 * 210.02739 * 1 2 3 28 28 H 1.09002 * 109.47032 * 330.02639 * 1 2 3 29 29 H 0.96704 * 113.99698 * 90.03348 * 5 4 3 30 30 H 1.09007 * 109.58309 * 246.19683 * 12 11 9 31 31 H 1.08992 * 109.58937 * 6.62213 * 12 11 9 32 32 H 1.09002 * 109.63318 * 294.85928 * 13 12 11 33 33 H 1.09001 * 109.43225 * 174.72296 * 13 12 11 34 34 H 1.09004 * 109.45606 * 58.53338 * 14 13 12 35 35 H 0.97000 * 119.99959 * 95.06465 * 15 14 13 36 36 H 0.96996 * 119.99823 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.49324 * 301.40756 * 24 14 13 38 38 H 1.09005 * 109.49247 * 181.31704 * 24 14 13 39 39 H 1.09004 * 109.58936 * 353.37824 * 25 11 9 40 40 H 1.09007 * 109.58817 * 113.65351 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7092 0.0006 5 8 4.6150 1.5463 0.0002 6 7 3.6181 -0.6386 0.0004 7 1 4.4243 -1.1780 0.0010 8 6 2.3110 -1.1059 0.0005 9 6 1.8792 -2.5045 0.0016 10 8 2.0161 -3.1830 1.0031 11 7 1.3300 -3.0411 -1.1060 12 6 1.2649 -2.2728 -2.3568 13 6 1.9045 -3.1075 -3.4767 14 6 1.2182 -4.4739 -3.5422 15 7 1.8006 -5.2604 -4.6324 16 6 1.3337 -5.1094 -5.9108 17 1 0.5365 -4.4103 -6.1155 18 6 1.8859 -5.8544 -6.9438 19 7 2.8578 -6.7061 -6.6944 20 14 1.2496 -5.6480 -8.6879 21 1 0.1629 -4.6359 -8.7018 22 1 2.3568 -5.1968 -9.5686 23 1 0.7234 -6.9466 -9.1799 24 6 1.4197 -5.2119 -2.2168 25 6 0.7796 -4.4032 -1.0841 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 4.9240 1.7900 0.8836 30 1 0.2239 -2.0629 -2.6028 31 1 1.8107 -1.3368 -2.2395 32 1 2.9664 -3.2432 -3.2715 33 1 1.7806 -2.5921 -4.4291 34 1 0.1521 -4.3364 -3.7230 35 1 2.5168 -5.8882 -4.4485 36 1 3.2434 -7.2269 -7.4162 37 1 2.4861 -5.3279 -2.0235 38 1 0.9507 -6.1943 -2.2725 39 1 1.0052 -4.8732 -0.1269 40 1 -0.3004 -4.3632 -1.2259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996697735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:45 Heat of formation + Delta-G solvation = -2.006907 kcal Electronic energy + Delta-G solvation = -23932.590171 eV Core-core repulsion = 20363.069451 eV Total energy + Delta-G solvation = -3569.520720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.50530 -39.89557 -37.76549 -37.34777 -34.58776 -33.51176 -32.28036 -31.33091 -30.52475 -29.31731 -27.32663 -24.99072 -23.35594 -23.08620 -22.27126 -21.35483 -20.24298 -19.68769 -18.84863 -17.67804 -17.10332 -16.86437 -16.19947 -15.79819 -15.02812 -14.88576 -14.31065 -14.08097 -13.79613 -13.63313 -13.46556 -13.42910 -13.07800 -12.90202 -12.73657 -12.41749 -12.20699 -12.00347 -11.62878 -11.04758 -10.95071 -10.87405 -10.65015 -10.53786 -10.32476 -10.24952 -10.01760 -9.88678 -9.73005 -8.97778 -8.66818 -8.54275 -7.03680 -5.82780 -3.12320 1.22363 1.91835 2.37589 2.75790 3.04010 3.39265 3.45110 3.47286 3.63020 4.36495 4.53065 4.62001 4.80932 5.02684 5.22328 5.25118 5.31776 5.44888 5.46866 5.49571 5.58604 5.62220 5.63322 5.69756 5.86162 5.91096 6.14355 6.16881 6.25346 6.30523 6.39109 6.42530 6.52037 6.80673 6.95612 7.27709 7.28629 7.54819 7.64471 7.95515 8.35307 9.46859 10.03527 10.37990 11.39789 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.003637 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.577803 B = 7697.790039 C = 8179.843774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.072 3.928 3 N -0.480 5.480 4 C 0.395 3.605 5 O -0.440 6.440 6 N -0.543 5.543 7 H 0.425 0.575 8 C -0.056 4.056 9 C 0.593 3.407 10 O -0.536 6.536 11 N -0.587 5.587 12 C 0.107 3.893 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.139 4.139 25 C 0.116 3.884 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.404 0.596 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 12.844 15.687 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 N -0.211 5.211 4 C 0.095 3.905 5 O -0.240 6.240 6 N -0.159 5.159 7 H 0.265 0.735 8 C -0.173 4.173 9 C 0.378 3.622 10 O -0.413 6.413 11 N -0.319 5.319 12 C -0.016 4.016 13 C -0.191 4.191 14 C 0.068 3.932 15 N -0.364 5.364 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.178 4.178 25 C -0.007 4.007 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.727 13.354 15.422 20.474 hybrid contribution 1.134 -0.963 -0.607 1.607 sum -0.593 12.391 14.815 19.323 Atomic orbital electron populations 1.20213 0.86428 1.03395 1.03289 1.20762 0.96519 0.86055 1.02796 1.70175 0.98571 1.30175 1.22154 1.20067 0.87328 0.78505 1.04633 1.84865 1.43386 1.61485 1.34312 1.43536 1.08464 1.07771 1.56173 0.73506 1.20508 0.83839 0.95279 1.17663 1.16781 0.78238 0.83801 0.83368 1.90848 1.56126 1.61200 1.33084 1.48106 1.57945 1.15876 1.09986 1.22018 1.01749 0.94571 0.83229 1.22762 1.00379 0.98953 0.96959 1.20180 0.96256 0.89468 0.87285 1.42437 1.43386 1.47330 1.03280 1.19281 1.14651 1.18811 0.84474 0.91043 1.24753 0.98789 0.99194 0.98105 1.69669 1.28204 1.28628 1.31508 0.86138 0.77929 0.77275 0.84967 1.20492 1.21885 1.21832 1.22209 1.01362 0.99382 0.94801 1.21733 0.97704 0.80553 1.00671 0.90204 0.90830 0.90242 0.73830 0.90879 0.90607 0.92405 0.90473 0.93175 0.78273 0.93516 0.91844 0.90225 0.89101 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.23 36.01 0.37 -0.35 16 2 C 0.07 0.88 6.64 -82.54 -0.55 0.33 16 3 N -0.48 -6.19 11.22 -10.83 -0.12 -6.32 16 4 C 0.40 4.40 9.43 -89.59 -0.84 3.55 16 5 O -0.44 -3.69 13.62 -17.31 -0.24 -3.93 16 6 N -0.54 -5.85 6.24 -10.91 -0.07 -5.92 16 7 H 0.43 3.66 8.96 -40.82 -0.37 3.30 16 8 C -0.06 -0.70 5.13 -81.98 -0.42 -1.12 16 9 C 0.59 8.33 7.15 -12.99 -0.09 8.24 16 10 O -0.54 -9.01 16.53 5.16 0.09 -8.92 16 11 N -0.59 -7.74 2.97 -174.15 -0.52 -8.26 16 12 C 0.11 1.38 6.29 -3.48 -0.02 1.36 16 13 C -0.15 -2.44 5.67 -26.39 -0.15 -2.59 16 14 C 0.18 3.25 2.73 -67.89 -0.19 3.07 16 15 N -0.72 -17.30 5.12 -53.38 -0.27 -17.57 16 16 C -0.24 -6.43 9.93 -15.06 -0.15 -6.57 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C -0.14 -2.14 5.55 -26.61 -0.15 -2.29 16 25 C 0.12 1.51 6.44 -3.72 -0.02 1.48 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.67 7.93 -51.93 -0.41 0.26 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.40 1.16 9.06 45.56 0.41 1.58 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.96 6.07 -51.93 -0.32 0.64 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -33.94 336.50 -7.38 -41.32 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.71 Total: 9.88 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.31 Total: 4.66 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.25 Total: -64.94 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.15 Total: -12.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.94 -7.38 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996697735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.315 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds