Wall clock time and date at job start Tue Mar 31 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.35843 * 126.45922 * 2 1 4 4 H 0.97001 * 124.91854 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16835 * 180.02562 * 3 2 1 6 6 C 1.31938 * 110.21041 * 0.02562 * 5 3 2 7 7 C 1.47527 * 126.46232 * 179.97438 * 6 5 3 8 8 O 1.21582 * 120.00261 * 174.18471 * 7 6 5 9 9 N 1.34778 * 119.99396 * 354.18549 * 7 6 5 10 10 C 1.46920 * 120.63639 * 354.00422 * 9 7 6 11 11 C 1.53194 * 108.77744 * 126.41085 * 10 9 7 12 12 C 1.53039 * 109.30999 * 54.63870 * 11 10 9 13 13 C 1.53050 * 109.53712 * 298.63369 * 12 11 10 14 14 H 1.08998 * 109.49339 * 301.37824 * 13 12 11 15 15 N 1.46497 * 109.49439 * 181.31923 * 13 12 11 16 16 C 1.36945 * 119.99806 * 155.00165 * 15 13 12 17 17 H 1.07997 * 119.99905 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00005 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99726 * 359.71975 * 18 16 15 20 20 Si 1.86799 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47250 * 90.00088 * 20 18 16 22 22 H 1.48506 * 109.47084 * 209.99930 * 20 18 16 23 23 H 1.48502 * 109.47059 * 329.99493 * 20 18 16 24 24 C 1.46925 * 120.62570 * 174.02754 * 9 7 6 25 25 C 1.35782 * 126.45944 * 180.30228 * 2 1 3 26 26 O 1.36081 * 127.27081 * 359.97438 * 25 2 1 27 27 H 1.09010 * 109.47392 * 90.02451 * 1 2 3 28 28 H 1.08998 * 109.47503 * 210.01971 * 1 2 3 29 29 H 1.08998 * 109.47549 * 330.02823 * 1 2 3 30 30 H 1.09002 * 109.58589 * 6.62792 * 10 9 7 31 31 H 1.08999 * 109.70637 * 246.26881 * 10 9 7 32 32 H 1.09002 * 109.49820 * 294.68606 * 11 10 9 33 33 H 1.09000 * 109.49877 * 174.58389 * 11 10 9 34 34 H 1.09007 * 109.46344 * 178.61700 * 12 11 10 35 35 H 1.09001 * 109.45561 * 58.64506 * 12 11 10 36 36 H 0.97005 * 120.00691 * 334.99361 * 15 13 12 37 37 H 0.97004 * 119.99421 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.59170 * 113.79829 * 24 9 7 39 39 H 1.09006 * 109.58854 * 353.37035 * 24 9 7 40 40 H 0.96701 * 114.00232 * 270.17397 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0045 2.0118 0.0004 5 7 3.5472 0.7322 -0.0005 6 6 3.6374 -0.5841 -0.0015 7 6 4.8810 -1.3777 -0.0028 8 8 4.8301 -2.5878 0.1031 9 7 6.0736 -0.7611 -0.1215 10 6 6.1472 0.6831 -0.3813 11 6 7.0394 1.3307 0.6824 12 6 8.3975 0.6255 0.7014 13 6 8.2038 -0.8484 1.0654 14 1 7.7209 -0.9220 2.0398 15 7 9.5073 -1.5153 1.1142 16 6 9.6742 -2.6371 1.8817 17 1 8.8450 -3.0299 2.4513 18 6 10.9092 -3.2693 1.9275 19 7 11.9182 -2.7937 1.2290 20 14 11.1365 -4.7999 2.9739 21 1 10.8281 -6.0047 2.1624 22 1 12.5415 -4.8700 3.4497 23 1 10.2208 -4.7418 4.1416 24 6 7.3248 -1.5206 0.0060 25 6 2.3138 -1.0921 -0.0058 26 8 1.9326 -2.3983 -0.0122 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5141 29 1 -0.3634 0.8902 0.5134 30 1 5.1475 1.1147 -0.3317 31 1 6.5719 0.8575 -1.3699 32 1 6.5667 1.2365 1.6601 33 1 7.1804 2.3853 0.4460 34 1 9.0429 1.1002 1.4405 35 1 8.8584 0.6987 -0.2836 36 1 10.2522 -1.1623 0.6028 37 1 12.7811 -3.2358 1.2607 38 1 7.8469 -1.5281 -0.9508 39 1 7.1022 -2.5431 0.3112 40 1 1.8201 -2.7796 0.8694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998956385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:18 Heat of formation + Delta-G solvation = -8.003796 kcal Electronic energy + Delta-G solvation = -23967.901527 eV Core-core repulsion = 20398.120763 eV Total energy + Delta-G solvation = -3569.780764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.80675 -40.94701 -38.75180 -38.10637 -36.23284 -34.20347 -33.40323 -32.74135 -32.04731 -30.01794 -27.82905 -27.05680 -25.86270 -24.33908 -23.26556 -22.35245 -21.56074 -20.11222 -19.40771 -19.11686 -18.15010 -17.83425 -17.06654 -16.91177 -16.60301 -15.99865 -15.63043 -15.52163 -15.18564 -15.14835 -14.97984 -14.68951 -14.10043 -13.99151 -13.75160 -13.67928 -13.30572 -13.17257 -12.92053 -12.71999 -12.51937 -12.19832 -11.91762 -11.88113 -11.68367 -11.40271 -11.35190 -11.11273 -10.76703 -10.44511 -9.77094 -9.71226 -9.02928 -7.99022 -5.28685 0.33723 0.85517 1.43935 1.46755 1.54568 1.67823 2.03694 2.20158 2.53453 3.03584 3.34007 3.59004 3.68905 3.79101 3.86728 4.00813 4.08594 4.24803 4.36255 4.39201 4.41511 4.65919 4.73602 4.77575 4.81776 4.86841 4.93682 5.04515 5.10354 5.12227 5.24788 5.36459 5.43621 5.46312 5.60303 6.03589 6.23482 6.39191 6.74020 6.79765 7.09321 7.29979 8.01269 8.27603 9.23761 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.003771 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.376458 B = 7422.683809 C = 8313.615603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 N -0.351 5.351 4 H 0.470 0.530 5 N -0.241 5.241 6 C -0.050 4.050 7 C 0.584 3.416 8 O -0.575 6.575 9 N -0.592 5.592 10 C 0.072 3.928 11 C -0.113 4.113 12 C -0.119 4.119 13 C 0.170 3.830 14 H 0.033 0.967 15 N -0.729 5.729 16 C -0.247 4.247 17 H 0.066 0.934 18 C -0.068 4.068 19 N -0.964 5.964 20 Si 0.970 3.030 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.272 1.272 24 C 0.107 3.893 25 C 0.013 3.987 26 O -0.470 6.470 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.378 0.622 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.200 15.300 -2.803 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.071 5.071 4 H 0.321 0.679 5 N -0.080 5.080 6 C -0.209 4.209 7 C 0.371 3.629 8 O -0.453 6.453 9 N -0.324 5.324 10 C -0.050 4.050 11 C -0.151 4.151 12 C -0.157 4.157 13 C 0.060 3.940 14 H 0.051 0.949 15 N -0.368 5.368 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.261 4.261 19 N -0.614 5.614 20 Si 0.799 3.201 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.197 1.197 24 C -0.018 4.018 25 C -0.043 4.043 26 O -0.277 6.277 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.166 0.834 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.210 0.790 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -25.571 15.478 -3.220 30.064 hybrid contribution 0.616 -1.642 0.738 1.902 sum -24.956 13.837 -2.481 28.643 Atomic orbital electron populations 1.20503 0.82647 1.05682 1.04791 1.21981 0.96861 0.85924 1.05943 1.43399 1.01972 1.10403 1.51298 0.67943 1.73054 1.02476 1.12417 1.20008 1.22129 0.94720 0.90889 1.13141 1.17502 0.82680 0.86214 0.76463 1.90766 1.86950 1.15089 1.52519 1.48131 1.04491 1.10806 1.69015 1.22919 1.05711 0.77696 0.98689 1.21784 0.93597 1.00601 0.99157 1.21766 0.98517 0.93548 1.01870 1.20619 0.85715 0.92552 0.95137 0.94891 1.42513 1.08007 1.30903 1.55425 1.19543 0.95492 1.03022 1.19826 0.91594 1.25512 0.95822 1.02549 1.02195 1.69800 1.01933 1.43283 1.46421 0.85196 0.76816 0.79552 0.78556 1.21588 1.21468 1.19706 1.22307 0.83646 0.95890 0.99980 1.18134 0.89033 0.86048 1.11036 1.84841 1.88591 1.19824 1.34443 0.88998 0.89150 0.87738 0.83447 0.91123 0.92142 0.87313 0.91731 0.91642 0.78976 0.93789 0.92448 0.93028 0.74405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.44 71.23 0.74 0.36 16 2 C 0.02 0.29 7.27 41.37 0.30 0.59 16 3 N -0.35 -4.16 6.87 -47.27 -0.32 -4.49 16 4 H 0.47 1.01 8.96 -220.00 -1.97 -0.96 16 5 N -0.24 -5.01 8.60 -48.08 -0.41 -5.43 16 6 C -0.05 -1.44 6.88 42.45 0.29 -1.15 16 7 C 0.58 22.24 7.69 86.69 0.67 22.90 16 8 O -0.58 -26.58 15.99 -2.29 -0.04 -26.62 16 9 N -0.59 -21.18 2.97 -822.68 -2.45 -23.62 16 10 C 0.07 1.89 6.33 86.36 0.55 2.44 16 11 C -0.11 -2.81 6.08 30.67 0.19 -2.62 16 12 C -0.12 -3.92 5.35 30.62 0.16 -3.75 16 13 C 0.17 7.31 2.92 45.07 0.13 7.45 16 14 H 0.03 1.53 8.08 -2.39 -0.02 1.51 16 15 N -0.73 -38.67 5.12 -322.56 -1.65 -40.33 16 16 C -0.25 -14.56 9.93 84.03 0.83 -13.72 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 19 N -0.96 -60.27 13.06 21.65 0.28 -59.99 16 20 Si 0.97 48.32 29.55 68.60 2.03 50.35 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 23 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 24 C 0.11 4.60 6.00 86.36 0.52 5.12 16 25 C 0.01 0.32 7.28 22.57 0.16 0.49 16 26 O -0.47 -11.98 13.21 -92.78 -1.23 -13.21 16 27 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.15 3.37 3.73 -80.61 -0.30 3.07 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.38 20.95 7.80 -92.70 -0.72 20.23 16 37 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.05 2.59 7.04 -2.38 -0.02 2.57 16 40 H 0.40 7.15 9.07 -74.06 -0.67 6.48 16 Total: -1.00 -83.03 332.47 -1.32 -84.36 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -2.55 Total: 24.47 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 5.01 Total: 14.50 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -4.55 Total: -133.85 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.26 Total: -39.82 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -83.03 -1.32 -84.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998956385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.351 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds